mRNA_S-dermatodea_contig92233.17287.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92233.17287.1
Unique NamemRNA_S-dermatodea_contig92233.17287.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: D8LNF6_ECTSI (Sterol delta-7 reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF6_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 6.340e-57
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   22 QAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHWDKV 321
            QA+G I+VWGK A+YITA YINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWT PAL +   PYFYVVFL+LLLTDRAFRDDTRCRGKYGKHWDK 
Sbjct:  400 QAKGDIIVWGKPAKYITAGYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTVPALFETPTPYFYVVFLVLLLTDRAFRDDTRCRGKYGKHWDKY 499
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A835YQ61_9STRA (Sterol delta-7 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ61_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.440e-40
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:   31 GQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHWDKV 321
            G+  +WG+ AE I A+Y N RG  + SLLLC+GWWG++RHFHY+ EI+ AF W+ PAL  NAAPYFYVVFL++LL DRA+RDD RCRGKYGK WD+ 
Sbjct:  342 GRCAIWGRPAEAIEATYDNGRGGTSRSLLLCSGWWGLSRHFHYVTEISSAFLWSVPALFHNAAPYFYVVFLVILLVDRAYRDDVRCRGKYGKFWDQY 438
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A1V9Z646_9STRA (7-dehydrocholesterol reductase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z646_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.060e-40
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    7 RLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHWDKV 321
            R+E    +G+ ++WGK+ EYITASY   +GEK  SLLL  GWWGV+RHFHY+PEI  A  W+ PAL  +  PYFYV FL +LL DRAFRDD RCR KYGK WDK 
Sbjct:  324 RMEFRSTEGKCIIWGKKPEYITASYTTEKGEKKQSLLLTCGWWGVSRHFHYIPEILAALCWSLPALASSCVPYFYVTFLTILLCDRAFRDDARCRAKYGKDWDKY 428
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A067D8P1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D8P1_SAPPC)

HSP 1 Score: 144 bits (363), Expect = 4.300e-39
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    7 RLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHWDKV 321
            R+E     G+ +VWGK+ EYITASY   +GEK  SLLL  GWWGV+RHFHY+PEI GA  W+ PA   +  PYFY+ FL +LL DRAFRDD RCR KYGK WDK 
Sbjct:  324 RMEFRSTNGKCLVWGKKPEYITASYTTEKGEKKESLLLTCGWWGVSRHFHYIPEILGALCWSLPAWDSSLVPYFYLTFLTILLCDRAFRDDARCRAKYGKDWDKY 428
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A2H5QI49_CITUN (Uncharacterized protein n=3 Tax=Citrus TaxID=2706 RepID=A0A2H5QI49_CITUN)

HSP 1 Score: 136 bits (342), Expect = 6.700e-39
Identity = 62/104 (59.62%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 RPRLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHW 312
            R R E  +  G+ +VWGK    I ASY  + GE   SLLL +GWWG+ARHFHY+PEI  AFFWT PAL  +  PYFYV+FL +LL DRA RDD RCR KYGK+W
Sbjct:   34 RQRQEFRRTNGRCLVWGKAPSKIVASYTTSSGETKQSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYW 137
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A438E533_VITVI (7-dehydrocholesterol reductase n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E533_VITVI)

HSP 1 Score: 136 bits (343), Expect = 1.280e-38
Identity = 63/107 (58.88%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 RPRLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHWDKV 321
            R R E  +  G+ +VWGK    I ASY    GE  SSLLL +GWWG++RHFHY+PEI  AFFWT PAL  +  PYFYV+FL +LL DRA RDD RCR KYGK+W K 
Sbjct:   68 RQRQEFRRTNGKCLVWGKAPSKIVASYTTTSGETKSSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFGHFLPYFYVLFLTILLFDRAKRDDDRCRSKYGKYWKKY 174
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A7J6IB75_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6IB75_CANSA)

HSP 1 Score: 142 bits (358), Expect = 2.060e-38
Identity = 65/104 (62.50%), Postives = 76/104 (73.08%), Query Frame = 1 
Query:    1 RPRLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHW 312
            R R E  +  G+ +VWGK    ITASY    GE  SS+LL +GWWG+ARHFHY+PEI+ AFFWT PAL  +A PYFYVVFL +LL DRA RDD RCR KYGK+W
Sbjct:  315 RQRQEFRRTNGKALVWGKAPSKITASYTTTTGETKSSILLTSGWWGLARHFHYVPEISAAFFWTVPALFDHALPYFYVVFLTILLLDRAKRDDDRCRSKYGKYW 418
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A5J4XEN1_9CHLO (7-dehydrocholesterol reductase-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEN1_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 4.580e-38
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:   31 GQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHW 312
            G+  VWGK   YITA Y  A G++ +SLLL +GWWG+ARHFHYLPEI  AF WT PALL    PYFYVVFL LLLTDRAFRDD RC+ KYGK+W
Sbjct:  378 GKAQVWGKAPTYITARYTPADGQEKTSLLLTSGWWGLARHFHYLPEILAAFCWTAPALLGQCLPYFYVVFLTLLLTDRAFRDDMRCQSKYGKYW 471
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A7J9K0U7_9ROSI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium armourianum TaxID=34283 RepID=A0A7J9K0U7_9ROSI)

HSP 1 Score: 133 bits (335), Expect = 5.260e-38
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 RPRLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHW 312
            R R E  +  G+  +WGK    I A+Y    GE  +SLLL +GWWG+ARHFHY+PEI  AFFWT PAL  +  PYFYVVFL +LL DRA RDD RCR KYGK+W
Sbjct:   21 RQRQEFRRTSGKCKIWGKAPSKIEATYTTTSGETKTSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVVFLTILLFDRAKRDDDRCRSKYGKYW 124
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BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Match: A0A396I0J3_MEDTR (Putative 7-dehydrocholesterol reductase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396I0J3_MEDTR)

HSP 1 Score: 138 bits (347), Expect = 8.630e-38
Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 RPRLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARHFHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKYGKHW 312
            R R E  +  G+ +VWGK    I ASY  A GE   SLLL +GWWG+ARHFHY+PEI  AFFWT PAL  +  PYFYV+FLI+LL DRA RDD RCR KYGK+W
Sbjct:  196 RQRQEFRRTNGKSLVWGKAPSKIEASYTTASGETKRSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLIILLFDRAKRDDDRCRSKYGKYW 299
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92233.17287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNF6_ECTSI6.340e-5786.00Sterol delta-7 reductase n=1 Tax=Ectocarpus silicu... [more]
A0A835YQ61_9STRA2.440e-4063.92Sterol delta-7 reductase n=1 Tax=Tribonema minus T... [more]
A0A1V9Z646_9STRA4.060e-4060.957-dehydrocholesterol reductase n=1 Tax=Thraustothe... [more]
A0A067D8P1_SAPPC4.300e-3960.95Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A2H5QI49_CITUN6.700e-3959.62Uncharacterized protein n=3 Tax=Citrus TaxID=2706 ... [more]
A0A438E533_VITVI1.280e-3858.887-dehydrocholesterol reductase n=1 Tax=Vitis vinif... [more]
A0A7J6IB75_CANSA2.060e-3862.50Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A5J4XEN1_9CHLO4.580e-3868.097-dehydrocholesterol reductase-like n=1 Tax=Trebou... [more]
A0A7J9K0U7_9ROSI5.260e-3858.65Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A396I0J3_MEDTR8.630e-3861.54Putative 7-dehydrocholesterol reductase n=2 Tax=Me... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92233contigS-dermatodea_contig92233:79..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue6.7e-48
Seed eggNOG ortholog2880.D8LNF6
Preferred nameDHCR7
KEGG rclassRC00138
KEGG koko:K00213
KEGG ReactionR01451,R01456,R07487,R07492
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
KEGG ModuleM00101
GOsGO:0000166,GO:0001568,GO:0001944,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0006066,GO:0006629,GO:0006694,GO:0006695,GO:0007275,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008610,GO:0009058,GO:0009791,GO:0009889,GO:0009918,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016131,GO:0016132,GO:0016491,GO:0016627,GO:0016628,GO:0019216,GO:0019218,GO:0019222,GO:0019867,GO:0030154,GO:0030176,GO:0030323,GO:0030324,GO:0031090,GO:0031224,GO:0031227,GO:0031965,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0033489,GO:0033490,GO:0035264,GO:0035295,GO:0036094,GO:0040007,GO:0042127,GO:0042175,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045540,GO:0046165,GO:0046890,GO:0047598,GO:0048037,GO:0048513,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050810,GO:0055114,GO:0060541,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0072358,GO:0072359,GO:0080090,GO:0090181,GO:0097159,GO:0098588,GO:0098805,GO:0098827,GO:0106118,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.sterol delta7 reductase activity
EggNOG OGsKOG1435@1,KOG1435@2759
EC1.3.1.21
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.9733672-CDS-S-dermatodea_contig92233:78..4021622925394.9733672-CDS-S-dermatodea_contig92233:78..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92233 79..402 +
1694079904.49749-CDS-S-dermatodea_contig92233:78..4021694079904.49749-CDS-S-dermatodea_contig92233:78..402Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92233 79..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92233.17287.1prot_S-dermatodea_contig92233.17287.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92233 79..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92233.17287.1

>prot_S-dermatodea_contig92233.17287.1 ID=prot_S-dermatodea_contig92233.17287.1|Name=mRNA_S-dermatodea_contig92233.17287.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
RPRLERPQAQGQIMVWGKQAEYITASYINARGEKASSLLLCTGWWGVARH
FHYLPEITGAFFWTCPALLQNAAPYFYVVFLILLLTDRAFRDDTRCRGKY
GKHWDKV*
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mRNA from alignment at S-dermatodea_contig92233:79..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92233.17287.1 ID=mRNA_S-dermatodea_contig92233.17287.1|Name=mRNA_S-dermatodea_contig92233.17287.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig92233:79..402+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCCCCGCTTGGAACGCCCTCAGGCTCAGGGTCAGATCATGGTGTGGGG
AAAGCAGGCGGAGTACATCACGGCTTCGTACATCAACGCTCGCGGCGAGA
AAGCCTCGTCCCTCCTCCTGTGCACCGGCTGGTGGGGGGTCGCCCGCCAC
TTCCACTACCTCCCCGAGATCACCGGGGCTTTCTTCTGGACGTGCCCAGC
GCTGCTCCAGAACGCGGCGCCCTACTTCTACGTGGTGTTCCTGATCCTGC
TGCTGACGGACAGGGCCTTCAGGGATGACACGCGCTGCCGCGGGAAGTAC
GGGAAGCACTGGGACAAGGTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig92233:79..402+

>mRNA_S-dermatodea_contig92233.17287.1 ID=mRNA_S-dermatodea_contig92233.17287.1|Name=mRNA_S-dermatodea_contig92233.17287.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig92233:79..402+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCCCCGCTTGGAACGCCCTCAGGCTCAGGGTCAGATCATGGTGTGGGG
AAAGCAGGCGGAGTACATCACGGCTTCGTACATCAACGCTCGCGGCGAGA
AAGCCTCGTCCCTCCTCCTGTGCACCGGCTGGTGGGGGGTCGCCCGCCAC
TTCCACTACCTCCCCGAGATCACCGGGGCTTTCTTCTGGACGTGCCCAGC
GCTGCTCCAGAACGCGGCGCCCTACTTCTACGTGGTGTTCCTGATCCTGC
TGCTGACGGACAGGGCCTTCAGGGATGACACGCGCTGCCGCGGGAAGTAC
GGGAAGCACTGGGACAAGGTGTGACGCCCCCGCTTGGAACGCCCTCAGGC
TCAGGGTCAGATCATGGTGTGGGGAAAGCAGGCGGAGTACATCACGGCTT
CGTACATCAACGCTCGCGGCGAGAAAGCCTCGTCCCTCCTCCTGTGCACC
GGCTGGTGGGGGGTCGCCCGCCACTTCCACTACCTCCCCGAGATCACCGG
GGCTTTCTTCTGGACGTGCCCAGCGCTGCTCCAGAACGCGGCGCCCTACT
TCTACGTGGTGTTCCTGATCCTGCTGCTGACGGACAGGGCCTTCAGGGAT
GACACGCGCTGCCGCGGGAAGTACGGGAAGCACTGGGACAAGGTGTGA
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