mRNA_S-dermatodea_contig9213.17281.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9213.17281.1
Unique NamemRNA_S-dermatodea_contig9213.17281.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9213.17281.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.100e-37
Identity = 69/112 (61.61%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:  514 LLAVFGVSEDDGALVLILGMVLLGLTVMACCYCKVYDPLKLWSIAAYNKHCKKRPKEDDGPPPDARPPAEREHWYLNKTLAIDREDRDELGPQRDVKGLQGGWYGARNGGFN 849
            L  VFGVSEDDGA VLI G+++ GLT  ACCYCKVYDPL+ WSI  YN+ CKK                 R HWYLN+TL IDR DRDELGPQ    GL+GGWYGARNGGF+
Sbjct:   13 LFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFD 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9213.17281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI1.100e-3761.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9213contigS-dermatodea_contig9213:9..4243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Exons3
Model size910
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9213.17281.1prot_S-dermatodea_contig9213.17281.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9213 64..2315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.4537868-UTR-S-dermatodea_contig9213:8..631622925394.4537868-UTR-S-dermatodea_contig9213:8..63Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9213 9..63 -
1694079904.1407106-UTR-S-dermatodea_contig9213:8..631694079904.1407106-UTR-S-dermatodea_contig9213:8..63Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9213 9..63 -
1622925394.4890013-UTR-S-dermatodea_contig9213:2315..27311622925394.4890013-UTR-S-dermatodea_contig9213:2315..2731Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9213 2316..2731 -
1694079904.169416-UTR-S-dermatodea_contig9213:2315..27311694079904.169416-UTR-S-dermatodea_contig9213:2315..2731Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9213 2316..2731 -
1622925394.5009086-UTR-S-dermatodea_contig9213:4170..42431622925394.5009086-UTR-S-dermatodea_contig9213:4170..4243Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9213 4171..4243 -
1694079904.1785727-UTR-S-dermatodea_contig9213:4170..42431694079904.1785727-UTR-S-dermatodea_contig9213:4170..4243Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9213 4171..4243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.4665432-CDS-S-dermatodea_contig9213:63..1951622925394.4665432-CDS-S-dermatodea_contig9213:63..195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9213 64..195 -
1694079904.1495824-CDS-S-dermatodea_contig9213:63..1951694079904.1495824-CDS-S-dermatodea_contig9213:63..195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9213 64..195 -
1622925394.4768145-CDS-S-dermatodea_contig9213:2081..23151622925394.4768145-CDS-S-dermatodea_contig9213:2081..2315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9213 2082..2315 -
1694079904.1582994-CDS-S-dermatodea_contig9213:2081..23151694079904.1582994-CDS-S-dermatodea_contig9213:2081..2315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9213 2082..2315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9213.17281.1

>prot_S-dermatodea_contig9213.17281.1 ID=prot_S-dermatodea_contig9213.17281.1|Name=mRNA_S-dermatodea_contig9213.17281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
MEEDDQQRLLAVFGVSEDDGALVLILGMVLLGLTVMACCYCKVYDPLKLW
SIAAYNKHCKKRPKEDDGPPPDARPPAEREHWYLNKTLAIDREDRDELGP
QRDVKGLQGGWYGARNGGFNA*
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mRNA from alignment at S-dermatodea_contig9213:9..4243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9213.17281.1 ID=mRNA_S-dermatodea_contig9213.17281.1|Name=mRNA_S-dermatodea_contig9213.17281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4235bp|location=Sequence derived from alignment at S-dermatodea_contig9213:9..4243- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAACGTCTAACGTCCGCCATTTCTCATTTTTGCATCACAGACCAGCACG
CGCACGCTAGGACCAAGAGCCAGGTGAGCCCCAGGAGGGCACGCTTAAAT
TCGCTACACGTCCATTAGCACTGTTGGCGTCCATCCCGAAGCTCTGAAAC
CTCGCATTTGGAGGAATTGCCAGCTCGGATTGCCCCGTAGAATGTGTGTA
TGTGTGCTAACAGCACAAGCAGAGAGCTGAGATGTAGAGTCCGTTGAGTT
CCCACTTCCCACGTTCCCACACAGCAGATATCGAGAAATGCGCCGCTCCG
CTGGCCGAGCAGGCCGTCCTCGCTCTGTCTTACGATGCCTCAACAATGGG
CAGCTCGTTCTCTCGGCGACTCTATGATACATTGAATGAAGAATTCCATC
TCCTGAGATTTTGCTTCGCCGTGATGGTTGTGTGCAACCCAGCCTGAAGC
AAGCAGTCAACGAGTACAGACTACTTGTAGTATGTGCAAGTGCAGCAGCA
GCAGCAGCAGCAGTCGACCTACACCTGTACTTGTTGTACATATCACGTAT
GTTTGTTGACTCGGCGGAGGAAATCGATGTCCCATACTGCTTTACAGTAT
GTTTGCTTCCGCCAGACTGCCAGAGGGAACATGCGTACTATGATATCATA
CTTGTACAGTATGATACTGCTTTGTGTTTTTCGTATGATACCGGTATGAT
AGATACGCGTATGTGTGGTGCGGAAGAACAAAAGCAAAGCAGCAACAACA
GAGTGCAGTCCGTCGCGGCTTGTTGTCCCAAGAAGCGCACTTCCGACGCT
CCCTTGGCTGCGTAGTTGTCGGTCCAGAGGAAGAGTATCGTGGACGGGGT
GAGACCCCATGATGTGCTCTTAGGATGGATACACAGCTAGAGTCTTCGTG
AAGCACTGCGCTGAGGTAGTCTCGTATCTCGCCCGCCGCCGCGGTGCTGT
TCTCAACATGCATGAGGACAGCCAACGTTATTTTTTCCCGCGTGTGATGT
ACCATGCATCTATGCAGGGTAGCTGCAGCAATATTATCTCGTCGTGCCAG
CATATCATCTGTTAACGACATTTCAGTTTTCTCTTGTTGAATTGCGCGCG
CGCTATGCAGCAAGCCAGACGCCCGCTCACCCGCCGATTCGTACCTTCTT
CGCGTCTAATCGCTCGCCGCTCATGGCACGCACGGGCTCCGCGCAAACTG
CGCAACGTGCTTTTGTAGAGCAGCACGCGTGTCCACGCGGGGGGGGCATC
ACCATAGATTTCCGCCGGCGCTAAATTGCGAATCCGTTCCCTGCAACATA
TCTGGTACATATAAAAAATTGCACCAACACTTCGCGGCGCTGGGGGGACG
TTAGTTCCGGAAACCCACGGGCACACAAAAGAAATAGGGTTAACTGTTAA
GCGTATGCGCGGCTATGCGAAGTAAAGAGTGCCCATACATCTTCGTGTCG
CCTCTAGCCGCGTATCATACGTCGTATCCCTGCCTTGCAAAACTCCCTCC
TCCGACACACAGATACCGCGGCGCTGCTGAAACGAGAGACGCGGAAAACT
CCGAATCCGCGACTACAAATACCACCGTACATAAGCTCTGGTTTACCCTC
ACCCTTGGGGGGGGGGCATTAGTCAATCCACGAAACAGTGCGCCGAGGAG
CGCGGGTGCGTTTTCTGCAGGCTCTCCGGGGAGATAAAGCAATCCGGGAA
CACCTCGGTGCTCCGATTTGACTAGCCTGCGGGCTTCTATTCGCTCGGAG
TCTTCCCTAGCGTCGGTGCGCGGCCGCGGGTGGGAGCGGGCGTTTTGCGG
ACCGCCGACGTTCCACTGAAGCGCGAGCTGCTTCGGTGGGCTTTCAAGGG
CCGAGGCAACGCAGCCCGGCGTTTGGCGGCGTGAGACCGGCCTCGCGCTG
AAGCGAGGAGTCTGACCAGGGTGAAGATATGGAGGAAGACGACCAACAAA
GACTGCTTGCGGTGTTTGGCGTGAGTGAGGACGACGGGGCGCTGGTACTG
ATCCTTGGCATGGTCCTACTCGGCTTAACTGTCATGGCATGCTGCTACTG
CAAGGTGTACGACCCTCTCAAGCTATGGTCCATCGCAGCCTACAACAAGC
ACTGCAAGAAACGACCGAAAGAAGATGACGGGCCGCCGCCTGACGCTCGC
CCTCCAGCGGAGGTGATTTCAACCCCAGCCCCTGTATTTTTCTTGAATTG
TGCATCCCCTGCTTTTTTTTGGGTTCGAGGTGGAGTTGGTCGAGGTAGGG
TTGGCTCTGCTTGTGGCATCGAGCTACAGAGCTGCTTTTCATCGGGAATG
GGGGATTCATTCAGTACGTCCTGTGAGCTCGAGAGACCTCGGCCGAAGAG
TTTTGTCTCTCCCCCAAAGGAGTACAACGCATCACATCCTATGGGATACC
TGCCGAATATCGGATTGTTGGAACGCCGTAGAGCAATCACACACTTACGA
GTGGTGTTCCGCCTGGAGTATTCATGAGCAGATTATCATCCGAGTGCAGT
ACACACATACCGCTGGGTATGATGTATGCGTGCGGTGCATTTGCGTTCAC
GCGGAGGTCAAATTATCTTTGCGTTACTTGAAGTTAGCCACGCCTACTGA
ATGTGCAACATTTGGTTACCCAGTATGTCCATCCAGCCCATGGTATATCC
GGTTTGGCGTCGCAAACGCAAGGATGATTAATGGCAGCTCGTACAAGTAT
CATCCTTGTGAAACGCAGCCTGGCAAGCAGAAGCCCGGCGTATCGCTCCT
TCCCGGCATTGTTGAGATGCGTGATAATTGTCCGTCTGGATACGACATGC
GTTAAACACCGGTACCTCAAAAAAAAAAAAAACAGAAACATAGAGCGAGC
GTTGCGGTCCCACCTTTTCAAGAGGGAGTACCCCCCCCCCCCGCCCCCCA
CCCCACCCACCTTGTGAAACGCAGCCTGGCTGGCGAGAACCCGGCATATC
GCTCCGTCCCGGCATTGTTGGGACGCGTGGTCTTATGTTCTTCTGGATAC
GGCATGCGTTAAACATCAGCCCCCCCCCCCCCAACCTTGTGAATCGCAGC
CTGACTGGCGAAAACCCGGCTTATTGTTACGCCTCGGCATTGTTGGGACG
GGTGGTCTATGTCCGTCTGGGTACGACATGCGTTAAACATCAGTAATCTC
CCCCCCCCGCGCTCCCCACCCACCCACCGGCCCCGTTTTGCTGTGCGCGA
GAAAATGGCGGTGTCGCCGAAGGGTTCACGTCCATGTGGCTGGACTCTTC
GTACATCACCAGCACACACGTACAATGAAGCATTGCCAGGCGCTTTGTGA
CAACCGCGGCTTCGTGCCCCTCCGCATTACACCCCCGTCTGTTTTGCGTG
AGCGCTCAGTGCTGTGTTTGGTGTTCTTGGAAGTGTGTTGGGTTATTCCT
CGTCGTGCAACTCGCATCGTACGGCCAAACGGCGCCAAACAAGAAGCAGC
CCTGCTCCGAAAGTCGTAAAGCTGCTGGATGCTGCAGCTCTGCTGCGCGA
AACCAGGCGTGGTGTATCCGTGCATAACGCTGAGTACCCCGGGATGTGAG
CCTGCTTCATGCGACAGCAGTAGGGGGGGTCCTTCAAGGACACTCGCCCC
CGTGCCATAAATCTTCATGGCGAGCATTACAATTTTGGAAAGCGGAGAAT
TTTGGCGGCTTTGCGCTCAGAGCCACGTGTTTGTGGCGCTCTTAAAAGAC
GACGGCAAGCTTCCCCCCTGAATACAACACATTTTCAAAAACATGAAAGT
GAGCCGTGGGGTCCATAATTTAGATTGGAGCGAGGTGACAGCGCAGACCA
CCCGATGGAGTGCCATGTCATGAATAGTACTACTACCTCAACAGAAGAAC
AAGTGTCTTTTAACGTGAACATAACACCCCCTTCCTCCTCCCCACCCCAC
CCCAATCGTATGGTGCTCGTTCTTGTGCCCCTCGCTCTGTCCGATTTATT
CCCTCCACCTCTTGGCGTTTTGTCCCCCTGCATCTATTGTCAATCCTGCC
CGGACGGTATCCCGCCCAAAAACGCACCCGCCGTTTTGGAACACGCAGCG
CGAACACTGGTACCTCAACAAAACCTTGGCAATCGACCGTGAAGACCGAG
ACGAGCTAGGGCCACAACGAGACGTCAAGGGCCTGCAGGGGGGCTGGTAT
GGCGCTCGAAATGGCGGGTTCAATGCTTAGATAGATATGCCATTGCCCTT
GCTTGTTGTCCTGTCCAGCCGGCGCTGCGAGGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9213:9..4243-

>mRNA_S-dermatodea_contig9213.17281.1 ID=mRNA_S-dermatodea_contig9213.17281.1|Name=mRNA_S-dermatodea_contig9213.17281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig9213:9..4243- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGAAGACGACCAACAAAGACTGCTTGCGGTGTTTGGCGTGAGTGA
GGACGACGGGGCGCTGGTACTGATCCTTGGCATGGTCCTACTCGGCTTAA
CTGTCATGGCATGCTGCTACTGCAAGGTGTACGACCCTCTCAAGCTATGG
TCCATCGCAGCCTACAACAAGCACTGCAAGAAACGACCGAAAGAAGATGA
CGGGCCGCCGCCTGACGCTCGCCCTCCAGCGGAGATGGAGGAAGACGACC
AACAAAGACTGCTTGCGGTGTTTGGCGTGAGTGAGGACGACGGGGCGCTG
GTACTGATCCTTGGCATGGTCCTACTCGGCTTAACTGTCATGGCATGCTG
CTACTGCAAGGTGTACGACCCTCTCAAGCTATGGTCCATCGCAGCCTACA
ACAAGCACTGCAAGAAACGACCGAAAGAAGATGACGGGCCGCCGCCTGAC
GCTCGCCCTCCAGCGGAGCGCGAACACTGGTACCTCAACAAAACCTTGGC
AATCGACCGTGAAGACCGAGACGAGCTAGGGCCACAACGAGACGTCAAGG
GCCTGCAGGGGGGCTGGTATGGCGCTCGAAATGGCGGGTTCAATGCTTAG
CGCGAACACTGGTACCTCAACAAAACCTTGGCAATCGACCGTGAAGACCG
AGACGAGCTAGGGCCACAACGAGACGTCAAGGGCCTGCAGGGGGGCTGGT
ATGGCGCTCGAAATGGCGGGTTCAATGCTTAG
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