mRNA_S-dermatodea_contig9210.17278.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9210.17278.1
Unique NamemRNA_S-dermatodea_contig9210.17278.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9210.17278.1 vs. uniprot
Match: A0A6H5JCR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.230e-18
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   16 AAENEEHFFEKARRCMLKAMGLGRKSMQGGGGLYXXXXXXXXXXXPAVPETAEEIEAKHKIKVKMPKRPNKKAMEVEGVDPL-WAAEHQ 279
            AA+ EE+FFEKARRC+L+A+G+ RKS QG GG +           P V ETA EI  +HKIKVKMPKRP KKAM+   VD   W  E Q
Sbjct:   97 AAQQEENFFEKARRCVLRAIGVSRKSGQGEGGSFSGPGSMRGGTSPVVAETAAEIALRHKIKVKMPKRPGKKAMDRASVDDHPWDVEQQ 185
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BLAST of mRNA_S-dermatodea_contig9210.17278.1 vs. uniprot
Match: D8LDG6_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.950e-14
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   34 HFFEKARRCMLKAMGLGRKSMQGGGGLYXXXXXXXXXXXPAVPETAEEIEAKHKIKVKMPKRPNKKAMEVEGVDP-LWAAEHQ 279
            +FFEKARRC+L+A+G+ RKS QG  G +           P V ETA EI  +HKIKVKMPKRP KKAM+   VD   W  E Q
Sbjct:  952 NFFEKARRCVLRAIGVSRKSGQGEEGSFSGPGSMRGGNSPIVAETAAEIALRHKIKVKMPKRPGKKAMDRASVDDHAWDVEQQ 1034
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9210.17278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCR3_9PHAE6.230e-1855.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDG6_ECTSI5.950e-1453.01Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9210contigS-dermatodea_contig9210:5362..6400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D8LDG6
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.260883-CDS-S-dermatodea_contig9210:5361..54781622925394.260883-CDS-S-dermatodea_contig9210:5361..5478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 5362..5478 -
1694079904.0149112-CDS-S-dermatodea_contig9210:5361..54781694079904.0149112-CDS-S-dermatodea_contig9210:5361..5478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 5362..5478 -
1622925394.274004-CDS-S-dermatodea_contig9210:6199..64001622925394.274004-CDS-S-dermatodea_contig9210:6199..6400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 6200..6400 -
1694079904.02677-CDS-S-dermatodea_contig9210:6199..64001694079904.02677-CDS-S-dermatodea_contig9210:6199..6400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 6200..6400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9210.17278.1prot_S-dermatodea_contig9210.17278.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9210 5362..6400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9210.17278.1

>prot_S-dermatodea_contig9210.17278.1 ID=prot_S-dermatodea_contig9210.17278.1|Name=mRNA_S-dermatodea_contig9210.17278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
QATAEAAENEEHFFEKARRCMLKAMGLGRKSMQGGGGLYGSNGGGGGGGG
PAVPETAEEIEAKHKIKVKMPKRPNKKAMEVEGVDPLWAAEHQGEALVEE
DGSSRR
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mRNA from alignment at S-dermatodea_contig9210:5362..6400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9210.17278.1 ID=mRNA_S-dermatodea_contig9210.17278.1|Name=mRNA_S-dermatodea_contig9210.17278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1039bp|location=Sequence derived from alignment at S-dermatodea_contig9210:5362..6400- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCCACCGCCGAGGCTGCCGAAAACGAGGAGCACTTCTTCGAGAAGGC
TCGCCGCTGCATGCTGAAGGCGATGGGTCTCGGACGCAAGAGCATGCAGG
GCGGTGGAGGCTTGTACGGTAGCAACGGTGGCGGAGGCGGTGGCGGTGGG
CCTGCTGTGCCCGAAACGGCCGAGGAGATTGAGGCCAAGCACAAGATTAA
GGCGAGAGAGAGGGGTTGTTATACGCGTTGACAATTTTTTTGGGAGAAAT
TATCTATCATTGTACGGGGTTACCCAGTAGTATCGTGGACCAAATTTACG
CTCCACACGAGAAGGGGAGGATTTCAGGATTGGAACCAGGATTTTGTACG
AGCGAGCGTATCGATTAGTTGCGGGTACAGATCAATTGTGTTCAGTTCCG
AGAATGGTTCAGAGAACGTTCGAAAAGTGTTATGGATGAAACGGCCCGAG
ATTGATTGATTATAGAAGGCGTATGTATGTAAGAGAGCCACATCGGCCAG
TCTGCACTCGTGTCTCAGTTAACGCTCAAGCTCACGCACAACGCCGAGGG
CTAGTTGGAAGGACAGCCGGTCGAACAAGTGCTGGCCCTAGTGAGCAGGA
CTCCTGCTTTGGGAGAAACAAAATTTTCTATGGTGTTACACAATAGTAGC
TCTCAGAACAAAAATTCCGCTCAACACGAGTATCATAGTCTCGTTTCTTT
TTAAGTTGGCCCAAAAGGGCACCTACCGTTGTAAGAAAAAAAATGAAAAA
AAATTATAATCCCTGCGCCATTATTATTGAACGATCAAAAACGATTAACA
CCTTCAAGAGCACGCACTCCCCCCAAACAAGGTTGGCTCACGCTCTATGA
TGACGCATATCATACCAGGTAGCATTAACCCCGCCTCACGCCGATCAAAC
TATCGAAATACTCTCGAACCAGGTCAAGATGCCGAAGCGGCCAAACAAGA
AGGCGATGGAGGTGGAGGGCGTCGACCCGCTATGGGCGGCTGAGCACCAG
GGGGAGGCACTCGTCGAGGAAGACGGATCTTCTCGCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9210:5362..6400-

>mRNA_S-dermatodea_contig9210.17278.1 ID=mRNA_S-dermatodea_contig9210.17278.1|Name=mRNA_S-dermatodea_contig9210.17278.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig9210:5362..6400- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCCACCGCCGAGGCTGCCGAAAACGAGGAGCACTTCTTCGAGAAGGC
TCGCCGCTGCATGCTGAAGGCGATGGGTCTCGGACGCAAGAGCATGCAGG
GCGGTGGAGGCTTGTACGGTAGCAACGGTGGCGGAGGCGGTGGCGGTGGG
CCTGCTGTGCCCGAAACGGCCGAGGAGATTGAGGCCAAGCACAAGATTAA
GCAGGCCACCGCCGAGGCTGCCGAAAACGAGGAGCACTTCTTCGAGAAGG
CTCGCCGCTGCATGCTGAAGGCGATGGGTCTCGGACGCAAGAGCATGCAG
GGCGGTGGAGGCTTGTACGGTAGCAACGGTGGCGGAGGCGGTGGCGGTGG
GCCTGCTGTGCCCGAAACGGCCGAGGAGATTGAGGCCAAGCACAAGATTA
AGGTCAAGATGCCGAAGCGGCCAAACAAGAAGGCGATGGAGGTGGAGGGC
GTCGACCCGCTATGGGCGGCTGAGCACCAGGGGGAGGCACTCGTCGAGGA
AGACGGATCTTCTCGCAGGGTCAAGATGCCGAAGCGGCCAAACAAGAAGG
CGATGGAGGTGGAGGGCGTCGACCCGCTATGGGCGGCTGAGCACCAGGGG
GAGGCACTCGTCGAGGAAGACGGATCTTCTCGCAGG
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