mRNA_S-dermatodea_contig9210.17277.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9210.17277.1
Unique NamemRNA_S-dermatodea_contig9210.17277.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9210.17277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9210contigS-dermatodea_contig9210:1729..4021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size361
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9210.17277.1prot_S-dermatodea_contig9210.17277.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9210 1729..4021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.197867-CDS-S-dermatodea_contig9210:1728..18521622925394.197867-CDS-S-dermatodea_contig9210:1728..1852Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 1729..1852 +
1694079903.980695-CDS-S-dermatodea_contig9210:1728..18521694079903.980695-CDS-S-dermatodea_contig9210:1728..1852Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 1729..1852 +
1622925394.2096965-CDS-S-dermatodea_contig9210:2147..22871622925394.2096965-CDS-S-dermatodea_contig9210:2147..2287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 2148..2287 +
1694079903.9936116-CDS-S-dermatodea_contig9210:2147..22871694079903.9936116-CDS-S-dermatodea_contig9210:2147..2287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 2148..2287 +
1622925394.2252831-CDS-S-dermatodea_contig9210:3925..40211622925394.2252831-CDS-S-dermatodea_contig9210:3925..4021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 3926..4021 +
1694079904.0036793-CDS-S-dermatodea_contig9210:3925..40211694079904.0036793-CDS-S-dermatodea_contig9210:3925..4021Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9210 3926..4021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9210.17277.1

>prot_S-dermatodea_contig9210.17277.1 ID=prot_S-dermatodea_contig9210.17277.1|Name=mRNA_S-dermatodea_contig9210.17277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
MVDGSKKRCTSKGCVKCAVYGPDGSRRQSSLCSRHITEVHNARASAVEAA
KARKEAKEMREETGWPVPLPNTKKWPLRVERFPRPLKTTFSSLGCGPSTG
KRMRVIEREERGASQDAQQV
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mRNA from alignment at S-dermatodea_contig9210:1729..4021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9210.17277.1 ID=mRNA_S-dermatodea_contig9210.17277.1|Name=mRNA_S-dermatodea_contig9210.17277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2293bp|location=Sequence derived from alignment at S-dermatodea_contig9210:1729..4021+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGATGGTTCAAAGAAAAGGTGCACCAGCAAGGGTTGCGTCAAGTG
CGCAGTGTACGGTCCGGATGGCAGTAGACGACAAAGCTCGCTTTGCTCTC
GACACATCACGGAGGTCCATAATGGTAAGCACATTGATGTACAGACTTTC
ATCTACAGATGTATTCCAGTAGTGTATTGCCATCGTGCGAGAATGCATAT
GAAACACCCGCCTTGTGAGTTCCGTTTGTCATGGTGCGATCTGTGCTGCA
TCGTTGCCGAAAACGCCCACGAACCATGCACGGCCACCAACGGTTGGTGC
GTCACCAAGTCCATGTTATGTTCTAGTCTCGCCATGATGTTCACTTGTTG
ACAGTTGAAAGTCTCCTGTCTTGAGACGAATTCACTCGTTTATTCCCCGA
TCTTGACATTGCCGTGTAGCTAGGGCATCAGCCGTTGAGGCAGCAAAGGC
AAGAAAGGAGGCGAAGGAGATGCGTGAAGAAACTGGTTGGCCGGTTCCTC
TGCCGAATACCAAGAAGTGGCCACTGAGGGTCGAGCGCTTCCCACGGCCA
CTTAAGACGGTAAGTGCGCTGCTTTCCTTGGAGCAGTACTGTGGTGTACG
GTATTTGTAGTGGCGGTGATATGGGTATTTTTGGGAGGGCTACAGCTATT
GCCTGGCCCATACGTGTTTCCTTCCGAAGACTTGGGCCTGTGGGATAAAC
CTAGAACCAAAAAACCAGCTGTTAAAGCGACCCGCACGGTGAATATTGTT
TGCAGAATCCCCGAAGCTTCCCCCGATAATATATATTACCGACCACACTG
GTGTTGCGAGTACTCGCGCTCATTTTTTCATGGGAGGTAAAAACATTGAA
AAAGCGTTGGCGATTGTGCGCTATAGTGTTTCATAACCGCGAGGAACTTA
CGTTTTCTCTGTGGGGACTGATACTGTGCGTGGCCTTGTCCTGATCCCCG
CGTGGTGCTTTGTACCTTCTTCGGCAACGATAATATTTACGTGTTTGCCT
TACTCCCTATGGAAGCGAACGGGGATCTTATATTACGCTGCCCGACGTAA
TGTTTACCTCAAACAACTCCATGGCGCCTTCGTGTTTTTTGCTTCGCCAC
TTCAAACTATGGCCTGACACGCTTTTGTGAACATGTAAAAGATAATCCGA
GAGTATGCGGTTCTGGAAATCATAGGGTGTCGTAGTTTAAACAGTTGGGG
TCCCAACGTTTCAACAATCTATAACAATGATATACGATGTTGCGGTGGCC
ACCATCGCCTCCGCAGGTATACTCGAATTTTCCACGCCGAGCGCGTCAGG
GTTTGGTTGGTACCGGCTGAAAGTTCACTTTCCACCCATGAAGTTGCTGC
CACCGATTTATGCATCACCGGCAGCACCGAATATATTGCTTCCTTCTACA
GCCAAAGCATCGTACTGCAGGGCGTTTGGAGGCTAAGTATACTTACGATT
TGGGCAAGTTACCGTCCTGTGTACAAGGACTTGGACGGGCAGTAGTTGTC
TATGAGAGCGGGACGCCATGCTGTTCGACTTCCCGCTTAGGTTGCCGATG
CCACAAAATGTATGGTTTTGTCGATTCCCTAACGCGATATAAATTATTTC
AAGATGAGCATTGGGTGAAGGACTTGTGAATCAGTTGTTCTGCGTCGAAG
AGAGGGCCACGTCTACCAAGACTTTCACACACCACGCTTTCATCAGCAGC
AACAGCAGCGACAGTCATTTGCCGCACCGCGACGTGGATATCCTGCACAA
GCTGTCGGGTGTTCGATGGAATTCCAACTCACCAAGGGGTTTCCGTCCAC
ATTTTGAGCAAGGGTGACGGAGTTCAATGCCCAACAAAGCGCACCTTTTA
TGTTGCCTTCGTCGTCACTCTCCCGCAAAGCGTTGCGGCAGGCGTTTTGA
GATATTTTATGCCTTGCTTGCCTAACAGATGCCACAAGTGATTATTCCAT
CGACCGCCGCTCTTTTTACACTGCAGTCCTTTGAGCAGGTCGCACCCGTG
TCGCGATCGGCTGTCGGCCTTTCGTATTATTGCCGATGAAGGCGTGCTGC
AACACAGGTTGTTGTTAAAAACATTTTTGCTCCCCTCGACCTTAACCGCA
AGAAATGAAGTGTTTACTTTGGATTTCAAAGTCGAGTCTATGGATTAATT
CAGCAATTGGTGAAACGTACTGACAAGCTCTACGAACTTGTCGACAGACA
TTTTCAAGCTTGGGTTGTGGTCCTTCAACTGGGAAGCGGATGCGAGTTAT
TGAAAGAGAGGAGCGCGGCGCATCGCAAGACGCACAACAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9210:1729..4021+

>mRNA_S-dermatodea_contig9210.17277.1 ID=mRNA_S-dermatodea_contig9210.17277.1|Name=mRNA_S-dermatodea_contig9210.17277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig9210:1729..4021+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGATGGTTCAAAGAAAAGGTGCACCAGCAAGGGTTGCGTCAAGTG
CGCAGTGTACGGTCCGGATGGCAGTAGACGACAAAGCTCGCTTTGCTCTC
GACACATCACGGAGGTCCATAATGATGGTTGATGGTTCAAAGAAAAGGTG
CACCAGCAAGGGTTGCGTCAAGTGCGCAGTGTACGGTCCGGATGGCAGTA
GACGACAAAGCTCGCTTTGCTCTCGACACATCACGGAGGTCCATAATGCT
AGGGCATCAGCCGTTGAGGCAGCAAAGGCAAGAAAGGAGGCGAAGGAGAT
GCGTGAAGAAACTGGTTGGCCGGTTCCTCTGCCGAATACCAAGAAGTGGC
CACTGAGGGTCGAGCGCTTCCCACGGCCACTTAAGACGCTAGGGCATCAG
CCGTTGAGGCAGCAAAGGCAAGAAAGGAGGCGAAGGAGATGCGTGAAGAA
ACTGGTTGGCCGGTTCCTCTGCCGAATACCAAGAAGTGGCCACTGAGGGT
CGAGCGCTTCCCACGGCCACTTAAGACGACATTTTCAAGCTTGGGTTGTG
GTCCTTCAACTGGGAAGCGGATGCGAGTTATTGAAAGAGAGGAGCGCGGC
GCATCGCAAGACGCACAACAGGTAACATTTTCAAGCTTGGGTTGTGGTCC
TTCAACTGGGAAGCGGATGCGAGTTATTGAAAGAGAGGAGCGCGGCGCAT
CGCAAGACGCACAACAGGTA
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