mRNA_S-dermatodea_contig92098.17275.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92098.17275.1
Unique NamemRNA_S-dermatodea_contig92098.17275.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.670e-27
Identity = 53/61 (86.89%), Postives = 59/61 (96.72%), Query Frame = 1
Query:   31 QVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            +VSLASRFDSYGN+ SG +GRQWRAE+EDKIEKWQE+QTAKTKKALPKPDDMPARKRGG+R
Sbjct:  368 KVSLASRFDSYGNDPSGHVGRQWRAEVEDKIEKWQEMQTAKTKKALPKPDDMPARKRGGRR 428          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.550e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   40 LASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            LA+R DS+  +  G +G++ R E+EDKIEKWQE Q AKTKKALP PD  P +KRGGKR
Sbjct:  275 LAARVDSFQQDMEGALGKKLRTELEDKIEKWQEPQKAKTKKALPAPDSKPKKKRGGKR 332          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A7S2SGM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.840e-12
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   31 QVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            +V+LA+R D + +  SG  G + R EI+DK+ KWQE Q A+TKKALP PD+ P++KRGGKR
Sbjct:   57 KVALAARIDLHQSEPSGTAGAKLRVEIDDKVTKWQETQQARTKKALPIPDEKPSKKRGGKR 117          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A7S2SGQ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGQ5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.770e-12
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   31 QVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            +V+LA+R D + +  SG  G + R EI+DK+ KWQE Q A+TKKALP PD+ P++KRGGKR
Sbjct:  354 KVALAARIDLHQSEPSGTAGAKLRVEIDDKVTKWQETQQARTKKALPIPDEKPSKKRGGKR 414          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A6G0X9V3_9STRA (Nop domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X9V3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.030e-11
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 QKSCRRTKIKQVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            +K   R    +V+LA+R DS  + ++   G+Q+  E+ DK EKWQ+ Q AKTKKALP+PDD P RKRGGKR
Sbjct:  298 RKKANRVVAGKVALAARVDSQPHRTAS-CGQQFYRELADKFEKWQQPQKAKTKKALPRPDDKPRRKRGGKR 367          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A024U7H9_9STRA (Nop domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U7H9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.760e-10
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   31 QVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            +V+LA+R DS  + ++  IG+Q+  E+++K EKWQ+ Q AKTKKALP+PD+ P RKRGGKR
Sbjct:  313 KVALAARVDSQPHRTAT-IGQQFYKELQEKFEKWQQPQKAKTKKALPRPDEKPRRKRGGKR 372          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A5D6Y1G7_9STRA (Nop domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1G7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.760e-10
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    4 KSCRRTKIKQVSLASRFDSY--GNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            K+CR    K V+L +R DS   G ++ G +G Q+RA +  KI KWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  331 KACRALAGK-VALMARIDSQPLGADAEGRVGAQFRAALAAKIAKWQEPQKAKTKKALPIPDEKPRRKRGGKR 401          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A7S4DKU2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKU2_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 2.370e-10
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 QKSCRRTKIKQVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            QK+ + T  K  +LA+R DSY +  SG+ G++ R EIEDKI+KWQE Q  KTKKA PKP+     KRGGKR
Sbjct:  249 QKALKVTAAK-CALAARVDSYQSAPSGQKGQELRQEIEDKIQKWQEPQEGKTKKARPKPEGGRKSKRGGKR 318          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: A0A225X1E4_9STRA (U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1E4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.290e-10
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 KSCRRTKIKQVSLASRFDS--YGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            K+CR    K ++L +R DS  + N++ G +G ++R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  321 KACRAVAGK-LALMARVDSQPHQNDTEGLVGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 391          
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Match: H3G8Y1_PHYRM (Nop domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3G8Y1_PHYRM)

HSP 1 Score: 63.9 bits (154), Expect = 3.290e-10
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 KSCRRTKIKQVSLASRFDS--YGNNSSGEIGRQWRAEIEDKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 213
            K+CR    K ++L +R DS  + N++ G +G ++R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  326 KACRAVAGK-LALMARVDSQPHQNDTEGLVGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 396          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92098.17275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE5.670e-2786.89Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XZL3_9STRA4.550e-1362.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SGM8_9STRA2.840e-1255.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SGQ5_9STRA7.770e-1255.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0X9V3_9STRA5.030e-1152.11Nop domain-containing protein n=5 Tax=Aphanomyces ... [more]
A0A024U7H9_9STRA1.760e-1055.74Nop domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A5D6Y1G7_9STRA1.760e-1055.56Nop domain-containing protein n=1 Tax=Pythium bras... [more]
A0A7S4DKU2_HETAK2.370e-1054.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A225X1E4_9STRA3.290e-1052.78U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Ta... [more]
H3G8Y1_PHYRM3.290e-1052.78Nop domain-containing protein n=17 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92098contigS-dermatodea_contig92098:217..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D8LKU3
Preferred namePRPF31
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001654,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005687,GO:0005690,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006346,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016604,GO:0016607,GO:0017069,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030621,GO:0030622,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034708,GO:0035097,GO:0040029,GO:0043010,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060041,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070417,GO:0070990,GO:0071005,GO:0071011,GO:0071166,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsCOG1498@1,KOG2574@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.0335438-CDS-S-dermatodea_contig92098:216..4321622925394.0335438-CDS-S-dermatodea_contig92098:216..432Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92098 217..432 -
1694079903.8771262-CDS-S-dermatodea_contig92098:216..4321694079903.8771262-CDS-S-dermatodea_contig92098:216..432Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92098 217..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92098.17275.1prot_S-dermatodea_contig92098.17275.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92098 217..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92098.17275.1

>prot_S-dermatodea_contig92098.17275.1 ID=prot_S-dermatodea_contig92098.17275.1|Name=mRNA_S-dermatodea_contig92098.17275.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
QKSCRRTKIKQVSLASRFDSYGNNSSGEIGRQWRAEIEDKIEKWQELQTA
KTKKALPKPDDMPARKRGGKR*
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mRNA from alignment at S-dermatodea_contig92098:217..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92098.17275.1 ID=mRNA_S-dermatodea_contig92098.17275.1|Name=mRNA_S-dermatodea_contig92098.17275.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig92098:217..432- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAAATCATGTCGACGGACGAAAATAAAACAGGTTAGCCTGGCGTCCCG CTTCGACAGCTACGGCAACAACTCTTCGGGAGAAATCGGACGTCAGTGGC GGGCGGAGATCGAGGACAAGATAGAGAAGTGGCAGGAGCTGCAGACGGCC AAGACAAAAAAAGCGCTGCCGAAGCCGGACGACATGCCGGCGCGGAAGCG AGGCGGGAAGAGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig92098:217..432-

>mRNA_S-dermatodea_contig92098.17275.1 ID=mRNA_S-dermatodea_contig92098.17275.1|Name=mRNA_S-dermatodea_contig92098.17275.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig92098:217..432- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAAATCATGTCGACGGACGAAAATAAAACAGGTTAGCCTGGCGTCCCG
CTTCGACAGCTACGGCAACAACTCTTCGGGAGAAATCGGACGTCAGTGGC
GGGCGGAGATCGAGGACAAGATAGAGAAGTGGCAGGAGCTGCAGACGGCC
AAGACAAAAAAAGCGCTGCCGAAGCCGGACGACATGCCGGCGCGGAAGCG
AGGCGGGAAGAGGTAGCAAAAATCATGTCGACGGACGAAAATAAAACAGG
TTAGCCTGGCGTCCCGCTTCGACAGCTACGGCAACAACTCTTCGGGAGAA
ATCGGACGTCAGTGGCGGGCGGAGATCGAGGACAAGATAGAGAAGTGGCA
GGAGCTGCAGACGGCCAAGACAAAAAAAGCGCTGCCGAAGCCGGACGACA
TGCCGGCGCGGAAGCGAGGCGGGAAGAGGTAG
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