mRNA_S-dermatodea_contig9207.17273.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9207.17273.1
Unique NamemRNA_S-dermatodea_contig9207.17273.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: D7FVW8_ECTSI (Protein kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW8_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 5.290e-119
Identity = 185/245 (75.51%), Postives = 210/245 (85.71%), Query Frame = 3 
Query:    3 VMEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVG-DDSVPEVRLADFGSAFRQHRQICASRDYTIAYSAPEILCGQGVDE--KVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWLRAVITRTRARATSHYPLRRRNRQQ 728
            VMEEV MLK+AG HPNVVT+QAF+EDQ+AYYIVM++C+GGEL+HRLADKGRYSEGQAARIMAEVA AVGFLHR+GIVHFDLKPENIMLAVG DD VPEVRLADFGSAFRQ+RQI ++RDYT AYSAPE+L  Q VD+  +VDMWALGVVMWVLLTG HPF A+ D SE ELARR+AE EPDL++  +RHVSPE K+LVRRLLA+DPEDRPSA Q+L HPWLRAV+T  R+       L RR  QQ
Sbjct:  160 VMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISSARDYTAAYSAPEVLSRQSVDDYRQVDMWALGVVMWVLLTGEHPFGAHSDLSEAELARRVAEMEPDLKA--LRHVSPEAKDLVRRLLARDPEDRPSALQLLSHPWLRAVVTTHRSSLRRPQGLVRRRHQQ 402
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: A0A6H5KFB2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB2_9PHAE)

HSP 1 Score: 359 bits (921), Expect = 1.550e-116
Identity = 185/245 (75.51%), Postives = 210/245 (85.71%), Query Frame = 3 
Query:    3 VMEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVG-DDSVPEVRLADFGSAFRQHRQICASRDYTIAYSAPEILCGQGVDE--KVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWLRAVITRTRARATSHYPLRRRNRQQ 728
            VMEEV MLK+AG HPNVVT+QAF+EDQ+AYYIVM++C+GGEL+HRLADKGRYSEGQAARIMAEVA AVGFLHR+GIVHFDLKPENIMLAVG DD VPEVRLADFGSAFRQ+RQI ++RDYT AYSAPE+L  Q VD+  +VDMWALGVVMWVLLTG HPF A+ D SE ELARR+AE EPDL++  +RHVSPE K+LVRRLLA+DPEDRPSA Q+L HPWLRAV+T  R+       L RR  QQ
Sbjct:  295 VMEEVQMLKVAGKHPNVVTMQAFFEDQEAYYIVMEMCEGGELFHRLADKGRYSEGQAARIMAEVASAVGFLHRNGIVHFDLKPENIMLAVGGDDCVPEVRLADFGSAFRQYRQISSARDYTAAYSAPEVLSRQSVDDYRQVDMWALGVVMWVLLTGEHPFGAHSDLSEAELARRVAEMEPDLKA--LRHVSPEAKDLVRRLLARDPEDRPSALQLLSHPWLRAVVTTHRSSLRRPQSLVRRRHQQ 537
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: A0A835Z8F3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F3_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.910e-71
Identity = 117/222 (52.70%), Postives = 158/222 (71.17%), Query Frame = 3 
Query:    9 EEVNMLKLAGAHPNVVTLQAFYEDQ--DAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAFRQHRQICASRDYTIAYSAPEILCGQ-GVDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWLRAV 665
            EEV M++ A  H N + L    ED+  D++YIVM+L QGGEL+ RL   GR++EG+AARIMAE+ +AV  LH  G+VHFD+KPENI+L  GD  +PEV LADFGSAF ++  +  SRDYT AYSAPE+L     +DEK D+W++GV+M+VLL+GRHPF+ +    +EE+ RRI  +EPD  +  +RHV P  K+L+RR+++KD   RPSA + L H W  AV
Sbjct:  164 EEVRMMRAAQGHRNCIRLLDSMEDEAGDSFYIVMELAQGGELFRRLQSHGRFTEGEAARIMAEILQAVEHLHSQGVVHFDIKPENIILRHGDSMIPEVMLADFGSAFSKNH-VTGSRDYTAAYSAPEVLLRSCAIDEKADIWSMGVLMYVLLSGRHPFDTHLHQDDEEVERRIVGKEPDYNAHAMRHVGPVAKDLLRRMMSKDRRQRPSAKEALSHAWFSAV 384
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: A0A4D9CX25_9STRA (cGMP-dependent protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX25_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.490e-54
Identity = 98/223 (43.95%), Postives = 149/223 (66.82%), Query Frame = 3 
Query:    3 VMEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAFRQHRQICASRDYT--IAYSAPEILCGQGVDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEP---DLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWL 656
            VM EV++L+LAG H N++  +  ++D++ +YIVM++ +GGEL+ RL ++G YSE QA+ IM E+ +AV +LH+ GIVH DLKPEN++LA        +RL DFGSAFR       S+  T  IAYSAPE++ G+    K D+WALGV+M++LL+G HPF+   D +++++  RI +E+             +SP+ K LV+RLL+ D + RP+A ++L  PW+
Sbjct:  182 VMTEVDILRLAGEHRNIIGFRDLFQDEENWYIVMEMAEGGELFDRLVERGAYSEAQASEIMREIVDAVSYLHQQGIVHCDLKPENLLLATKASDTSNMRLVDFGSAFRADSGKLVSKKGTGTIAYSAPEVISGRPCGYKADVWALGVLMYILLSGYHPFDPLNDANDDQIGARIVKEKEKYVSFEQPVWERISPQAKMLVKRLLSSDAQTRPTAQELLHDPWI 404
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: W7TAW9_9STRA (Calcium calmodulin-dependent protein kinase i n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAW9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 4.120e-54
Identity = 96/214 (44.86%), Postives = 143/214 (66.82%), Query Frame = 3 
Query:    3 VMEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAFRQHRQICASRDYT--IAYSAPEILCGQGVDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEP---DLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSA 629
            VM EV++L+LAG H N++  +  ++D++ +YIVM++ +GGEL+ RL ++G YSE QA+ IM E+ +AV +LH+ GIVH DLKPEN++LA        +RL DFGSAFR       S+  T  IAYSAPE++ G+    K D+WALGV+M++LL+G HPF+   D +++++  RI +E+             +SPE K LV+RLL+ D + RP+A
Sbjct:  225 VMTEVDILRLAGEHRNIIGFRDLFQDEENWYIVMEMAEGGELFDRLVERGAYSEAQASEIMREIVDAVSYLHQQGIVHCDLKPENLLLATKASDTSNMRLVDFGSAFRADSGKLVSKKGTGTIAYSAPEVISGRPCGYKADVWALGVLMYILLSGYHPFDPLNDANDDQIGARIVKEKEKYVSFEQPVWERISPEAKMLVKRLLSSDAQTRPTA 438
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: A0A7S2XVS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVS7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.980e-52
Identity = 98/239 (41.00%), Postives = 155/239 (64.85%), Query Frame = 3 
Query:    3 VMEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAFRQHRQICASRDY---TIAYSAPEILCGQGVDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWLRAVITRTRARATSHYPLR 710
            V+EEV MLK+AG H  +   + F+  ++ +YIVM++  GGEL+  L + G YSE +A   + E+ EA+ +LH  GIVHFDLKPENI+LA     + ++RLADFGSAF       + ++    T+AYSAPE+L G+  D + D+W+LGV+++++LTG HPF+ +   ++E++  R+ + E        R  SP+ K+LV+RLL  D + RP+A ++L HPW ++ +++TR   +S   L+
Sbjct:  142 VLEEVEMLKVAGEHRMITNFRDFFVGENNFYIVMEMATGGELFDHLVNHGMYSEQEARDFLMELLEALKYLHSQGIVHFDLKPENILLASSGSRL-DIRLADFGSAFFLSDLDDSPKNAPTGTVAYSAPEVLRGKVHDARCDLWSLGVLLFIILTGVHPFDPDHTATDEKVKERVLKGELHFDEEDWREFSPQAKDLVKRLLTFDVDKRPTAEEVLEHPWFQSEVSKTRKTDSSSEHLK 379
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: A0A835ZES4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES4_9STRA)

HSP 1 Score: 184 bits (466), Expect = 8.000e-52
Identity = 100/228 (43.86%), Postives = 148/228 (64.91%), Query Frame = 3 
Query:    3 VMEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVP--EVRLADFGSAFRQHRQICASRDYTI--AYSAPEILCGQGV-DEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWLRAVIT 671
            + +E ++L+ A AH N++ L+A   DQ ++YIVM+L +G ELY RL  +G  S+ Q++ ++ ++ +A+ +LHR GI H D+KPENI++   DDS     V+LADFGSAFR    +   +DYT   AYS PE++ G     E  D+++LGVV ++LLTGRHPF+ +GD SEE++  RI  +EPD        V    ++LVRR L+K P  RP+A+ ML HPW++   T
Sbjct:  134 IQDETSILQ-ATAHKNIIQLRAVGGDQSSWYIVMELARGVELYDRLVTRGMLSQAQSSALLKQLLDALVYLHRCGITHGDIKPENIIVNDDDDSNGGLTVKLADFGSAFRTRAGVPRRKDYTTTAAYSPPEVVSGAAAATEAADVFSLGVVAYILLTGRHPFDPSGDASEEDVLARIVSDEPDFSDAAWGDVDAAARDLVRRALSKAPSARPTASAMLAHPWVQQQRT 360
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: D8LEH8_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH8_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.600e-49
Identity = 99/227 (43.61%), Postives = 139/227 (61.23%), Query Frame = 3 
Query:   12 EVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAF---RQHRQICASRDYTIAYSAPEILCGQGVDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGK-NLVRRLLAKDPEDRPSANQMLRHPWLRAVITRTR 680
            EV+ML++AG H NVV  +  + D + YYIVM+   GGEL+ RL  KG +SE  AA ++ EV +AV +LH H I+HFD+KPENI+L   D    +VRL DFGSAF           +   TIAYSAPE+L GQ V    DMW+LGVV+++LL+G HPF+  G  ++ ++ R++   E    S        EG  +L+ +LL  DP+ RP+A  +L HPW++     +R
Sbjct:  102 EVDMLRMAGQHKNVVGFRDLFSDDNFYYIVMEFATGGELFDRLVTKGAHSEHDAASLLREVVDAVAYLHGHSIIHFDIKPENILLHDADTDDIDVRLVDFGSAFVVGATGESGPKNDSGTIAYSAPEVLRGQSVSTAADMWSLGVVLYILLSGFHPFDLEGGANDADVRRKVLARELTFES--AHWSGKEGAVDLINQLLDSDPKRRPTAEAVLAHPWMQKTANLSR 326
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: A0A0P1AW08_PLAHL (Camk camk1 protein variant partial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AW08_PLAHL)

HSP 1 Score: 177 bits (449), Expect = 4.130e-49
Identity = 100/236 (42.37%), Postives = 140/236 (59.32%), Query Frame = 3 
Query:   12 EVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAFRQHRQICASRDYTIAYSAPEILCGQG----VDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWLRAVITRTRARATSHYPL 707
            E+  L+    HPN+V L   +E     ++V++LC GGEL+ RLA+KG YSE    R + ++A AV +LH  GIVH DLKPENI+L+  DD    V++ADFG A         ++  T  YSAPE++ G G     D+KVD W+LG ++++LL G HPF+  GD S+ E+   I   + +    G   +S E K+LVR LL  DP+DR S  Q+L HPW+   I+   A  TS +PL
Sbjct:  111 EIMALRRVKRHPNIVELIDVFETAREVHLVLELCTGGELFERLAEKGAYSEEDCVRHVRDMARAVQYLHECGIVHRDLKPENILLSNSDDHNAVVKVADFGLAKIFAGTNLKTKCGTWGYSAPEMISGSGSTFGYDDKVDSWSLGTILYILLCGYHPFDPEGDRSDNEMIASIKSCKFEFDDDGWATISNEAKDLVRHLLVLDPDDRFSMKQVLDHPWINGSISAA-AFQTSEHPL 345
[Close]
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Match: H3G6X9_PHYRM (Protein kinase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6X9_PHYRM)

HSP 1 Score: 172 bits (437), Expect = 5.470e-49
Identity = 92/219 (42.01%), Postives = 132/219 (60.27%), Query Frame = 3 
Query:   12 EVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGRYSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLADFGSAFRQHRQICASRDYTIAYSAPEILCGQG----VDEKVDMWALGVVMWVLLTGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAKDPEDRPSANQMLRHPWL 656
            E+ +L+    HPN+V L   +E     ++V++LC GGEL+ RLA+KG YSE    R + ++A+AV +LH  GIVH DLKPENI+L+  DD    V++ADFG A         ++  T  YSAPE++ G G     D+KVD W+LG ++++LL G HPF+  G+ S+ E+   I     D    G   +S   K+LV+ LL  DP+DR S  Q+L HPW+
Sbjct:   27 EIAVLRRVKQHPNIVELIDVFETTREVHLVLELCTGGELFERLAEKGAYSEADCVRHVRDMAKAVEYLHECGIVHRDLKPENILLSTPDDQEAVVKVADFGLAKVFTGTSLKTKCGTWGYSAPEMISGSGSTFGYDDKVDSWSLGTILYILLCGYHPFDPEGERSDNEMIASIKACSFDFDDDGWTTISDGAKDLVKHLLVLDPDDRFSMEQVLEHPWI 245
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9207.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVW8_ECTSI5.290e-11975.51Protein kinase domain containing protein n=1 Tax=E... [more]
A0A6H5KFB2_9PHAE1.550e-11675.51Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z8F3_9STRA2.910e-7152.70Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A4D9CX25_9STRA1.490e-5443.95cGMP-dependent protein kinase n=1 Tax=Nannochlorop... [more]
W7TAW9_9STRA4.120e-5444.86Calcium calmodulin-dependent protein kinase i n=2 ... [more]
A0A7S2XVS7_9STRA1.980e-5241.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZES4_9STRA8.000e-5243.86Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D8LEH8_ECTSI3.600e-4943.61cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A0P1AW08_PLAHL4.130e-4942.37Camk camk1 protein variant partial n=1 Tax=Plasmop... [more]
H3G6X9_PHYRM5.470e-4942.01Protein kinase domain-containing protein n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9207contigS-dermatodea_contig9207:1446..7974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog112098.XP_008605469.1
KEGG koko:K08794,ko:K08804
KEGG Pathwayko04921,ko04925,map04921,map04925
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-01_002420.1
Exons6
Model size934
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9207.17273.1prot_S-dermatodea_contig9207.17273.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9207 1451..7804 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925393.814698-UTR-S-dermatodea_contig9207:1445..14501622925393.814698-UTR-S-dermatodea_contig9207:1445..1450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9207 1446..1450 +
1694079903.6879506-UTR-S-dermatodea_contig9207:1445..14501694079903.6879506-UTR-S-dermatodea_contig9207:1445..1450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9207 1446..1450 +
1622925393.8892682-UTR-S-dermatodea_contig9207:7804..79741622925393.8892682-UTR-S-dermatodea_contig9207:7804..7974Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9207 7805..7974 +
1694079903.7819467-UTR-S-dermatodea_contig9207:7804..79741694079903.7819467-UTR-S-dermatodea_contig9207:7804..7974Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9207 7805..7974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925393.8254576-CDS-S-dermatodea_contig9207:1450..15941622925393.8254576-CDS-S-dermatodea_contig9207:1450..1594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 1451..1594 +
1694079903.714167-CDS-S-dermatodea_contig9207:1450..15941694079903.714167-CDS-S-dermatodea_contig9207:1450..1594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 1451..1594 +
1622925393.8381805-CDS-S-dermatodea_contig9207:2087..21831622925393.8381805-CDS-S-dermatodea_contig9207:2087..2183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 2088..2183 +
1694079903.725717-CDS-S-dermatodea_contig9207:2087..21831694079903.725717-CDS-S-dermatodea_contig9207:2087..2183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 2088..2183 +
1622925393.8476014-CDS-S-dermatodea_contig9207:4627..46491622925393.8476014-CDS-S-dermatodea_contig9207:4627..4649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 4628..4649 +
1694079903.734938-CDS-S-dermatodea_contig9207:4627..46491694079903.734938-CDS-S-dermatodea_contig9207:4627..4649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 4628..4649 +
1622925393.8617167-CDS-S-dermatodea_contig9207:5647..57531622925393.8617167-CDS-S-dermatodea_contig9207:5647..5753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 5648..5753 +
1694079903.7508316-CDS-S-dermatodea_contig9207:5647..57531694079903.7508316-CDS-S-dermatodea_contig9207:5647..5753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 5648..5753 +
1622925393.8704684-CDS-S-dermatodea_contig9207:7024..71931622925393.8704684-CDS-S-dermatodea_contig9207:7024..7193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 7025..7193 +
1694079903.7600257-CDS-S-dermatodea_contig9207:7024..71931694079903.7600257-CDS-S-dermatodea_contig9207:7024..7193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 7025..7193 +
1622925393.8798134-CDS-S-dermatodea_contig9207:7582..78041622925393.8798134-CDS-S-dermatodea_contig9207:7582..7804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 7583..7804 +
1694079903.7700458-CDS-S-dermatodea_contig9207:7582..78041694079903.7700458-CDS-S-dermatodea_contig9207:7582..7804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9207 7583..7804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9207.17273.1

>prot_S-dermatodea_contig9207.17273.1 ID=prot_S-dermatodea_contig9207.17273.1|Name=mRNA_S-dermatodea_contig9207.17273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=253bp
MEEVNMLKLAGAHPNVVTLQAFYEDQDAYYIVMDLCQGGELYHRLADKGR
YSEGQAARIMAEVAEAVGFLHRHGIVHFDLKPENIMLAVGDDSVPEVRLA
DFGSAFRQHRQICASRDYTIAYSAPEILCGQGVDEKVDMWALGVVMWVLL
TGRHPFEANGDTSEEELARRIAEEEPDLRSRGIRHVSPEGKNLVRRLLAK
DPEDRPSANQMLRHPWLRAVITRTRARATSHYPLRRRNRQQSPAPQQQQD
LA*
back to top

mRNA from alignment at S-dermatodea_contig9207:1446..7974+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9207.17273.1 ID=mRNA_S-dermatodea_contig9207.17273.1|Name=mRNA_S-dermatodea_contig9207.17273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6529bp|location=Sequence derived from alignment at S-dermatodea_contig9207:1446..7974+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGATGGAGGAGGTGAACATGCTGAAGCTGGCAGGCGCGCACCCGAAC
GTGGTGACCCTGCAGGCGTTCTATGAGGACCAAGACGCCTACTACATCGT
CATGGACCTCTGCCAGGGGGGGGAGTTGTACCACCGCTTGGCCGACAAGG
TGCGTTTGCGTTATTATAGTAATATGTATGTACATACTCGTGTGTCCCGA
TTTGACGGCCGCCGCTCACCCTTCGCACCAGATCTGGACGTCTGAAGACA
TACACCCAGAATCATGTGATGTATTTGTTGCTTGTGCAAGTACAGCAGTA
TGACACCAGTATCACGCACATCGTTCGTTTTATCATGTCGTAAATCTGGC
ACAAATATCATGTTATAATACAAGCAATAGCTCATTAAGCTTTGTCGCAG
CGGGAACATTAGGGGAGCCGTGTGTGTGGTGTGTGCGGCAAGCAGCTATT
AATAGCTCGCCCGGAGCGGGGAGCGGTAGCGGTGCGACTTTGCAGCATTT
CCGTGCGATCGCAAATCTGATACAGCGCTTGACACCAATTGACACCAACC
CCATTTGTTTTACCTTCCCTTCCCTTCGTCTCTCTGCTCTTGCTTGGTCG
CTTTTCCTTGCTTCCCGGTGGTGGCTGTTTGGGCGGCCGCAGGGGCGATA
CTCCGAGGGACAAGCCGCTCGCATCATGGCGGAGGTGGCGGAGGCTGTAG
GGTTCCTGCATCGCCATGGCATCGTGCACTTCGACCTGGTGCGTTTTTGG
GCGATGATGATGATGGCATGTCGACCGACCACAACGCACCCGATGTATGA
TACTTGCAGATCTGCGGCGTCTCCACATTTTTCAGGCCTTGCACACAGCA
CACGCAAAAACCCTTACGCATTCTTCCCTTTGGTCTTACGCTCTCATTCT
CTCTATACGTATGACAAGTATATATATTTATATTTCGATGCGTATGTATT
GAATAATAATATAGTGCACCTGTATCGTTTCGTGGTGAGAGTTGAATTTT
TGCGACGGGGTGCTCGCTTGCTCTCCATCTGTCGGGTTTATCGTTTTCAT
CGCACAGGGCATGGTGCTCGCTGCTCACGACGGTGCGCGCGAAAGTAGGA
TTTGTTGTCCAGTACATCATTATACATACACTGTCATAGTGGGTAGCCAC
GGCTAGTATACGCCCGTGTGAGGTGTGCGTTGGCAGGACGATATGCCGAC
GGAACGCGACACGGAGGTCGAAAGCGGTCGAGCTACTGTGCGTGTCGCTG
CTGTGTTTCCGCTTTTTCAAAAATAATATACGCTTAAACACGATTAGTAT
GCTTTGTGTGCATTGAACCAAGAACGGGATGCGCAGCTCAGTTTTTCGAA
TCAGGATTTAAAATTTTGACGCGTTGTTTGGGACGCAAGCAAGTACGGAG
GGCCCCAAAGCCGGCCTTTGTTGTTTATGTGTTTTCTTCCCGAGTTTACG
AGTTTGTAAAAAATGTTTTCGAATAATTTCCAGTCGGTCATAACTTTGCG
AAGAAAAAAAAAGCGAAAAACAGAAAAGGCTAGCTTTGGCGGCCCTCCTG
CGTAAATGCGTTCCAAATAACCTGTCAACTTTCAAGTCCTGATTCGAAAA
ACTAAGCTGCGCATTACGAAATTACTCGGAAATGAAATCGGTTTCTTGGT
CGGCCCACCTTGTATCTGTCTATGTAGCTAGCCCCGTTGACTCTTTGTGG
GACTTTTGAGTCAGTTTACCGGCCCCTCTGTCCGATGCCCGCACCCTACA
CTTGTATCAAATCGAGCAGTGATTGAACATGGAACCGCCGTGGCCGCTGT
TAGCAGTATTATATACAGTATTATATACGATAAGGACGTAGGGGTAGTGA
TAAGTCACACCCTGCCCCTACCCTGCGTAGCTTGCTTGCACAGCATACCC
GCAGTGGAGATAGACGCCGCGCGAAACTATCTGACTCAGTCCCGAAGGGT
TAGTATTTATAGAAGTATTTGCATTAGTGTCTGTATATTAATAATAGTAT
AATAATAATATTTCAGGATCGTAGTAGAGCTCTAGGGGCGAGATCGAGAT
TTCTCCGTCCTTTTTATTAGGAGACGGAAGGGCCAGGGTATCTCGCACCC
TCTCCCGGTGCTGCTGGTTTATCTCCCAAGAGTCGCGTCGTTTCAAGATG
TATGAAGCGTCGGCGGCTGTTTTGTTGTTGTTTGTTTGGGTCTGATGTGA
TGTGATGTGATGACATTAATACATGATAGATCATTGTCGTCGTTTCGATT
GTGGAGCTCGATGGATGTCGCCGGGCTCACTGAAGGAAAAAACTATCTCT
AATGGTGTCGAACTCATTCATGCATATCATACTTGTATGATACAGATTTC
GGAAGGGCGCCTAGGCTTACATATTATTATGTTATTAAGTACTGTAGTGT
TACGGTAATGCTGTACGTGAGTTCCTTGAGTTTCGTGAGTAAGCGTGTCT
GTTTGTTATTTCACGCGTAGCTGGCACGTTTTTCGTCCTCAACTCGCATC
TTTGTCTGACGGCTAAGGTATTAAAGATGACGTGGGAACAAAAGCGCAGT
AAGGGCAGTTTCTATCGGAGGCGTTTTGGTCACGAAAATGGACATCTCAC
GAAACGTAAGTGTTTCAAACACGCCTTTTTACAAATCTCACGTTTCGTGA
ATTGAACCCTCACGTTTTACGTTTTTTTTCGTGAGTGTTCATTCAATTCA
CGAAACGTGAGGCGATTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTGGG
TTTAAAAAAGTTTTTTAATTTGTTTTTTCTTTTTTTTTTTTTTGTTTTTT
TGTTCTTATNNNNNNNNNNTTGTTTGTTGTCATATAGTGATCATTATATT
CAAGAAACGTGTGGCTTTTTTTTTTTTTTTTTTTTTTTTTCCGCGAAACG
GCGGAGATAAAAAAAGCGGCACACTGGCTCTCTCACGTTTCGTGAGGGAG
TAAGCGCTCGATAGAAACGGCCCTATCTATTTCCTGGTTTATTTTATTAT
TATTTGTTTGATCTGACGGCGAATCAATCACCCCCCTGCGTCCCCCTTTC
CCCCGCGCTCTCACTGCCGCCTTTTGTATCATACCCTATCGTGTCATCAC
TCCTGCGCTTTGGACTGGACCTGAACGGCCTGGCCTGTGTTTGCGTCTCC
CGCTCGTGACACGGCCATCGCAAACCATACAGAAACCGGAGAACATCATG
CTAGGTGAGGACCGTGCGAGGATGGCGAGACAGCACTACAGCTGTATTTT
GGAATTTATGTAGCTCGTGCGGGGTATATTTTATATTTTTTTGCGTTTTC
GGGTCCCGCGTGCGGTAGGTACTGTAGAAGGAGTTGTACTGTAGGTGGGC
TTGGCGCCCCTTGTGAAACACGAGCAGGATCGATCCGAAACAAAGCCTTC
GTCCCGTGTTGTTTTATGTTGTTTTATTTTGAATGTGGCATACTATTTTA
TAAATAGTACTATTTGCTGGAATGCTGCTGCTTGCTGTTTGTTAGGGATT
TCTCTCTTTTCTTTTCTTTTTTTGACAAATAATTGGAGAAAAAAAAACGT
GGACTCTTTTTTTCCCGTTCGAACGAAGGTTGAAGACACTCGTTTGTATA
ATATTTGGTACTTCATTACAGAATATAATATGCTTCGAAGTATGTATTTA
ATTACAGAAACGTCTGCTTACGCGTTGTCCGGCCGAATCGGTTTTTATTT
TGCATGTACCAGTATTAATAGGAATATTTGCGACCGACCGCTTGGCGCGC
GAATCTCGCGAGTCTTGCGCTCGCGTATTTTTGGTAGCATACAGTATGGC
GGGGGGTGTGCGCGGAATGGACTTGCATTCCCCATACTCAGACTTGTAGC
GAACGTGGAACACATAAATGTAGCGCTGCTGGTGTCGGCGCGCGTGGCTT
CGCATGATTAGCTGGACCTGAGTCTGATACGAATGACACGACAAGAGAAG
CCATAGCTCGGGACCATCTGCGCGATCTTGTGATACCCGCAAAAAATAAA
CGTAAATGCGTTGTATCATGTGAGAAGCATATCTGTCACGCTTCATCCGT
CTGTGGCAAGATTTTTTTTGACACAATTTTGCCTTGAGATGGTACGAAGG
CAAGGTACTCTAAAAACCGCGCGTCTAACTAACCCTGTTATGTTTTCCCC
CCTCCCTGTTTGCGTGTTTTTGCTTTGGGCGTTCTCATCGTTCCCCTTAT
AGCCGTTGGCGATGACTCTGTCCCCGAGGTACGCCTGGCAGACTTCGGGT
CGGCGTTCAGGCAGCACAGACAGATCTGCGCATCGAGGGACTACACCATC
GCCTACAGGTGAGAGAACAGCCCGCGCGCGCGGTTTGAACTTGCAAGGTC
TTCCGTTGATTTTCATGTTTTGTAGGAATCACGCCACCAGGGGATGCCCA
AGGTTTGCCCCTAGCACTACGGTACTACTGCCCTGTCTGTTGTATGTTTG
ATGCTACTCCAGTTTAGTGGGTGGGTGTATCATATATCCTTTTGTCGGTC
TTTCGAAGTTCGTTTTTGGATCTCCCCGTGGGTAGTTTTGTCACCCGAGG
ACCGTTCGGTGGATGGATGGAGGCAGGTAGAGCAGCATAATGATTTGTGC
GTTGTGTATACGGCAAGAATAAGGAGCATGCCACTCCACTCCTGCCGTGC
CTGCTTCATGAGACGAGTTGACCGTTTGACCGTTTTCGGAGCTGTGGTAT
TAACGCTAGGAGGCTGGCGGCTGGCTCTCTTGCACAGAGTAAATAAGTAC
CCTCGCGATGTATACTATTTATAGGAGTAGTTGTCTTGGGATGTCGTCCG
TCCGTCCGTCCGTATGTCTGTCTTGCTGAATGAAGGTGATGCCACCAACC
GTGCCATGCAGCTCCGCAGGGTCCAGCTTTAAGCTTCTAAGTACCCCGAT
AATTAAACCATTTTGATAAAGAAGAGCTCTTATTGTAGCACTTGCGAAAA
GCGTTCTTGAGGAGATTTTTTTTTGTATATGCCCGGGCGCCCGCCGCAAG
CAGCATTTGCGCGATTAAAAGGGATGGTGCTTAGGCAGCATTGAGCTTTG
CGCGCCGTGGTGCGCTTGCGATTATCTCAACTCAAACATGTGGCGGCGTG
CGTTCTGCATGGGGGCTTTGATAGTTTTGCCTCCGCCCTGAAAAATCGAG
CGTCATCGAGCATGTACAAACAATAAGTATTGTCTCGGTATTCGGTATGA
TAAGCTCGATGCTCTTTCATGTAGAGAGAGAGAGAAAAGGTGCCCGCAGT
TTTCTGATTGGTCAATTTTTTTGAACGAAAATTTCCTGCGAGAAAGTACA
ATTGAGGTGCCGTGCATACAACGTTAAACCCCTAAGTTGTAAATCTGAGG
TAGTAATAGACAGCCGTGTTCTACTGTTGGGGCACGGAAACGAAAGCACA
TGTGGTGGAATAAAACTGCACTTGACAAAAAGGCGCACAGACCCCAATGC
CAGTGTCAATCCCAATCCCAATCCCAATCCCAATCCCAATCCCAACAGTT
TTGCGAACGATGCCCCCCGCCCCCTGAACCCGTCTGTGTGTTTGTGTGTG
TTTTGTTACTTTCCTCGCGTTCTTTTCAGCGCCCCCGAGATCCTGTGTGG
CCAGGGCGTGGACGAGAAGGTGGACATGTGGGCTCTGGGCGTGGTGATGT
GGGTGCTCCTCACGGGCAGGCACCCTTTCGAGGCGAACGGCGACACCTCC
GAGGAAGAGCTCGCCCGCAGGATAGCGGAGGAGGAACCTGACCTTAGGGT
GAGGCACACTTGTCGGAGGCCTGGGCATACACAGCCGTGTCGTAGGGCGC
GGTTTACGTAGGAGTTGTGTGTAAACTGGCGTGTGGGCGGGGGGGGGGTG
TTATTCGCGGCGGAAAGTGGGCGGGGCAGACGTTAACCGGAGAAAACGGG
CCGGGCAATCGCGGATGCGTATTGCAACCCGATACTTGCAGGTGATTCGT
CAAAATACGGCCGGCGCCTGCTTAAAATGCCCGATTACTTTTTACCTGAG
TAGACGAAAGCACCGACCAGTTGACTAACCTCCTCTGCCCTCCCTTCCGT
CCGTCCGTCCTCCCCAACGCCCCCTGTACAATCAATCCTCCCGCGGTGAC
TCTGACATTCCTTCCGGGTCGACACCCCACCCCGCAGTCTCGCGGCATCC
GGCACGTCTCCCCCGAGGGGAAGAACCTCGTGCGACGTCTGCTCGCGAAG
GACCCCGAAGACCGCCCGTCGGCCAACCAGATGCTGCGCCACCCGTGGCT
CCGCGCGGTTATCACGCGCACGCGCGCTAGGGCCACCTCGCATTACCCGC
TTCGCCGTCGCAATCGCCAGCAATCGCCGGCACCGCAACAGCAGCAGGAC
CTTGCGTAGAGTGACGCCCGCAGCAGGTCCCACGCCCAGGAGGCACTGCC
CCGCGGTGGGGAAGACAAGGCATGAGAGGCCGGCGCGGGGGCGGCAGCTA
CTGCCGTCACGTCACGAGCGTAGCCGGAGGTGACCCCCTCTCGGCTTAAG
TATGTTGTGATGTTTTTTCGACGTCCGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9207:1446..7974+

>mRNA_S-dermatodea_contig9207.17273.1 ID=mRNA_S-dermatodea_contig9207.17273.1|Name=mRNA_S-dermatodea_contig9207.17273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at S-dermatodea_contig9207:1446..7974+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGAGGTGAACATGCTGAAGCTGGCAGGCGCGCACCCGAACGTGGT
GACCCTGCAGGCGTTCTATGAGGACCAAGACGCCTACTACATCGTCATGG
ACCTCTGCCAGGGGGGGGAGTTGTACCACCGCTTGGCCGACAAGATGGAG
GAGGTGAACATGCTGAAGCTGGCAGGCGCGCACCCGAACGTGGTGACCCT
GCAGGCGTTCTATGAGGACCAAGACGCCTACTACATCGTCATGGACCTCT
GCCAGGGGGGGGAGTTGTACCACCGCTTGGCCGACAAGGGGCGATACTCC
GAGGGACAAGCCGCTCGCATCATGGCGGAGGTGGCGGAGGCTGTAGGGTT
CCTGCATCGCCATGGCATCGTGCACTTCGACCTGGGGCGATACTCCGAGG
GACAAGCCGCTCGCATCATGGCGGAGGTGGCGGAGGCTGTAGGGTTCCTG
CATCGCCATGGCATCGTGCACTTCGACCTGAAACCGGAGAACATCATGCT
AGAAACCGGAGAACATCATGCTAGCCGTTGGCGATGACTCTGTCCCCGAG
GTACGCCTGGCAGACTTCGGGTCGGCGTTCAGGCAGCACAGACAGATCTG
CGCATCGAGGGACTACACCATCGCCTACAGCCGTTGGCGATGACTCTGTC
CCCGAGGTACGCCTGGCAGACTTCGGGTCGGCGTTCAGGCAGCACAGACA
GATCTGCGCATCGAGGGACTACACCATCGCCTACAGCGCCCCCGAGATCC
TGTGTGGCCAGGGCGTGGACGAGAAGGTGGACATGTGGGCTCTGGGCGTG
GTGATGTGGGTGCTCCTCACGGGCAGGCACCCTTTCGAGGCGAACGGCGA
CACCTCCGAGGAAGAGCTCGCCCGCAGGATAGCGGAGGAGGAACCTGACC
TTAGGCGCCCCCGAGATCCTGTGTGGCCAGGGCGTGGACGAGAAGGTGGA
CATGTGGGCTCTGGGCGTGGTGATGTGGGTGCTCCTCACGGGCAGGCACC
CTTTCGAGGCGAACGGCGACACCTCCGAGGAAGAGCTCGCCCGCAGGATA
GCGGAGGAGGAACCTGACCTTAGGTCTCGCGGCATCCGGCACGTCTCCCC
CGAGGGGAAGAACCTCGTGCGACGTCTGCTCGCGAAGGACCCCGAAGACC
GCCCGTCGGCCAACCAGATGCTGCGCCACCCGTGGCTCCGCGCGGTTATC
ACGCGCACGCGCGCTAGGGCCACCTCGCATTACCCGCTTCGCCGTCGCAA
TCGCCAGCAATCGCCGGCACCGCAACAGCAGCAGGACCTTGCGTAGTCTC
GCGGCATCCGGCACGTCTCCCCCGAGGGGAAGAACCTCGTGCGACGTCTG
CTCGCGAAGGACCCCGAAGACCGCCCGTCGGCCAACCAGATGCTGCGCCA
CCCGTGGCTCCGCGCGGTTATCACGCGCACGCGCGCTAGGGCCACCTCGC
ATTACCCGCTTCGCCGTCGCAATCGCCAGCAATCGCCGGCACCGCAACAG
CAGCAGGACCTTGCGTAG
back to top