mRNA_S-dermatodea_contig92064.17272.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92064.17272.1
Unique NamemRNA_S-dermatodea_contig92064.17272.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: D1J719_ECTSI (Photosystem II reaction center protein T n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J719_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.760e-18
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    1 MGIDFSQVSEPSLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            MGIDFSQ+S+P+LVY+ LLIGTLMVLFFAVFFRDPPK+LKE
Sbjct:    1 MGIDFSQLSQPALVYAILLIGTLMVLFFAVFFRDPPKILKE 41          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: A0A2I4Q384_9PHAE (Photosystem II reaction center protein T n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q384_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-15
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    1 MGIDFSQVSEPSLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            M +D SQ SEP+LVYS LLIGTLMVLFFAVFFRDPP+V+K+
Sbjct:    1 MNLDLSQFSEPALVYSVLLIGTLMVLFFAVFFRDPPRVIKQ 41          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: A0A7S6U9Z7_9STRA (Photosystem II reaction center protein T n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6U9Z7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.020e-8
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            +LVY+ LLIGTLMVLFFAVFFR+PPKVLK+
Sbjct:    3 ALVYTFLLIGTLMVLFFAVFFREPPKVLKK 32          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: M1K004_DIALT (Photosystem II reaction center protein T n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K004_DIALT)

HSP 1 Score: 52.0 bits (123), Expect = 4.170e-8
Identity = 21/30 (70.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            ++VYSTLLIGTL+V+FFA+FFRDPP++ K+
Sbjct:    3 AIVYSTLLIGTLIVIFFAIFFRDPPRIAKK 32          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: B7T1V2_VAULI (Photosystem II reaction center protein T n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1V2_VAULI)

HSP 1 Score: 51.2 bits (121), Expect = 8.430e-8
Identity = 22/30 (73.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            +LVY+ LLIGTL++LFFAVFFRDPP+V+K+
Sbjct:    3 ALVYTFLLIGTLIILFFAVFFRDPPRVIKK 32          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: W0RYV0_PORPP (Photosystem II reaction center protein T n=7 Tax=Rhodophyta TaxID=2763 RepID=W0RYV0_PORPP)

HSP 1 Score: 49.7 bits (117), Expect = 3.390e-7
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLK 120
            +LVY  LL+GTLMV+FFAVFFRDPPK+ K
Sbjct:    3 ALVYVFLLVGTLMVIFFAVFFRDPPKIAK 31          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: A0A3G2QYP8_9STRA (Photosystem II reaction center protein T n=4 Tax=Synurales TaxID=420622 RepID=A0A3G2QYP8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.890e-7
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            +LVY+ LLIGTLMVLFFAVFFRD PK+++ 
Sbjct:    3 ALVYTFLLIGTLMVLFFAVFFRDTPKIIRS 32          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: A0A8H2SID2_9STRA (Photosystem II reaction center protein T n=2 Tax=Nitzschia TaxID=2857 RepID=A0A8H2SID2_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 9.880e-7
Identity = 21/30 (70.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            +LVY+ LLIGTLMV+FFAVFFRD P++L++
Sbjct:    3 ALVYTFLLIGTLMVIFFAVFFRDTPRILRK 32          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: K9ZVB6_9STRA (Photosystem II reaction center protein T n=34 Tax=Eukaryota TaxID=2759 RepID=K9ZVB6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.400e-6
Identity = 20/30 (66.67%), Postives = 28/30 (93.33%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            +LVY+ LLIGTLMV+FFAVFFR+PP+++ +
Sbjct:    3 ALVYTFLLIGTLMVIFFAVFFREPPRIITK 32          
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Match: PSBT_CYACA (Photosystem II reaction center protein T n=161 Tax=Eukaryota TaxID=2759 RepID=PSBT_CYACA)

HSP 1 Score: 47.8 bits (112), Expect = 2.000e-6
Identity = 20/30 (66.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:   34 SLVYSTLLIGTLMVLFFAVFFRDPPKVLKE 123
            +LVY  LLIGTL+V+FFA+FFRDPP++ K+
Sbjct:    3 ALVYVFLLIGTLVVIFFAIFFRDPPRIAKK 32          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92064.17272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J719_ECTSI5.760e-1885.37Photosystem II reaction center protein T n=52 Tax=... [more]
A0A2I4Q384_9PHAE1.600e-1578.05Photosystem II reaction center protein T n=1 Tax=D... [more]
A0A7S6U9Z7_9STRA1.020e-883.33Photosystem II reaction center protein T n=2 Tax=S... [more]
M1K004_DIALT4.170e-870.00Photosystem II reaction center protein T n=2 Tax=P... [more]
B7T1V2_VAULI8.430e-873.33Photosystem II reaction center protein T n=1 Tax=V... [more]
W0RYV0_PORPP3.390e-775.86Photosystem II reaction center protein T n=7 Tax=R... [more]
A0A3G2QYP8_9STRA4.890e-773.33Photosystem II reaction center protein T n=4 Tax=S... [more]
A0A8H2SID2_9STRA9.880e-770.00Photosystem II reaction center protein T n=2 Tax=N... [more]
K9ZVB6_9STRA1.400e-666.67Photosystem II reaction center protein T n=34 Tax=... [more]
PSBT_CYACA2.000e-666.67Photosystem II reaction center protein T n=161 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92064contigS-dermatodea_contig92064:411..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925393.7797642-CDS-S-dermatodea_contig92064:410..5361622925393.7797642-CDS-S-dermatodea_contig92064:410..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92064 411..536 -
1694079903.6617515-CDS-S-dermatodea_contig92064:410..5361694079903.6617515-CDS-S-dermatodea_contig92064:410..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92064 411..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92064.17272.1prot_S-dermatodea_contig92064.17272.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92064 411..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92064.17272.1

>prot_S-dermatodea_contig92064.17272.1 ID=prot_S-dermatodea_contig92064.17272.1|Name=mRNA_S-dermatodea_contig92064.17272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=42bp
MGIDFSQVSEPSLVYSTLLIGTLMVLFFAVFFRDPPKVLKE*
back to top

mRNA from alignment at S-dermatodea_contig92064:411..536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92064.17272.1 ID=mRNA_S-dermatodea_contig92064.17272.1|Name=mRNA_S-dermatodea_contig92064.17272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at S-dermatodea_contig92064:411..536- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCATAGATTTTTCACAAGTATCAGAACCCTCACTAGTATATTCAAC TTTATTAATAGGAACATTAATGGTTCTTTTCTTTGCTGTATTCTTCCGTG ATCCACCTAAAGTATTAAAAGAATAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig92064:411..536-

>mRNA_S-dermatodea_contig92064.17272.1 ID=mRNA_S-dermatodea_contig92064.17272.1|Name=mRNA_S-dermatodea_contig92064.17272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig92064:411..536- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCATAGATTTTTCACAAGTATCAGAACCCTCACTAGTATATTCAAC
TTTATTAATAGGAACATTAATGGTTCTTTTCTTTGCTGTATTCTTCCGTG
ATCCACCTAAAGTATTAAAAGAATAAATGGGCATAGATTTTTCACAAGTA
TCAGAACCCTCACTAGTATATTCAACTTTATTAATAGGAACATTAATGGT
TCTTTTCTTTGCTGTATTCTTCCGTGATCCACCTAAAGTATTAAAAGAAT
AA
back to top