mRNA_S-dermatodea_contig92064.17270.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92064.17270.1
Unique NamemRNA_S-dermatodea_contig92064.17270.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: D1J721_ECTSI (Photosystem II reaction center protein H n=54 Tax=Phaeophyceae TaxID=2870 RepID=D1J721_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 7.800e-16
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFML 108
            MAFKTKLGDILRPLNSEYGKVAPGW+TTL+MGI ML
Sbjct:    1 MAFKTKLGDILRPLNSEYGKVAPGWATTLIMGIAML 36
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: D4NY71_GALSU (Photosystem II reaction center protein H n=2 Tax=cellular organisms TaxID=131567 RepID=D4NY71_GALSU)

HSP 1 Score: 67.4 bits (163), Expect = 5.280e-14
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFML 108
            MA KT+LG+ILRPLNSEYG+VAPGW +TLLMG+FML
Sbjct:    1 MALKTRLGEILRPLNSEYGRVAPGWGSTLLMGVFML 36
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: A0A1J0AF98_9CYAN (Photosystem II reaction center protein H n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1J0AF98_9CYAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-13
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFM 105
            MA +T+LGDILRPLNSEYGKVAPGW TT LMG+FM
Sbjct:    1 MALRTRLGDILRPLNSEYGKVAPGWGTTPLMGVFM 35
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: UPI001CA63C9C (photosystem II reaction center protein PsbH n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA63C9C)

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-13
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFM 105
            MA +T+LGD+LRPLNSEYGKV PGW TT+LMG+FM
Sbjct:    1 MAIRTRLGDVLRPLNSEYGKVVPGWGTTVLMGVFM 35
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: PSBH_NEOYE (Photosystem II reaction center protein H n=202 Tax=Rhodophyta TaxID=2763 RepID=PSBH_NEOYE)

HSP 1 Score: 65.9 bits (159), Expect = 2.150e-13
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFML 108
            MA +T+LG+ILRPLNSEYGKVAPGW TT +MGIFML
Sbjct:    1 MALRTRLGEILRPLNSEYGKVAPGWGTTPIMGIFML 36
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: UPI0019DB162F (Photosystem II reaction center protein PsbH n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019DB162F)

HSP 1 Score: 65.5 bits (158), Expect = 2.910e-13
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFM 105
            MA +T+LGDILRPLNSEYGKV PGW TT+LMGIFM
Sbjct:    1 MAQRTRLGDILRPLNSEYGKVTPGWGTTVLMGIFM 35
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: PSBH_SYNE7 (Photosystem II reaction center protein H n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=PSBH_SYNE7)

HSP 1 Score: 65.5 bits (158), Expect = 3.060e-13
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFML 108
            MA +T+LGDILRPLNSEYGKVAPGW TT +MG+FML
Sbjct:    1 MAQRTRLGDILRPLNSEYGKVAPGWGTTPVMGVFML 36
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: K9XPG5_STAC7 (Photosystem II reaction center protein H n=5 Tax=Cyanobacteria TaxID=1117 RepID=K9XPG5_STAC7)

HSP 1 Score: 65.5 bits (158), Expect = 3.060e-13
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFML 108
            MA +T+LGDIL+PLNSEYGKVAPGW TT LMG+FML
Sbjct:    1 MAQRTRLGDILKPLNSEYGKVAPGWGTTPLMGVFML 36
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: A0A2W7AEE7_9CYAN (Photosystem II reaction center protein H n=2 Tax=Bacteria TaxID=2 RepID=A0A2W7AEE7_9CYAN)

HSP 1 Score: 65.1 bits (157), Expect = 3.840e-13
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFM 105
            MA +T+LGDIL+PLNSEYGKV PGW TTLLMG+FM
Sbjct:    1 MAQRTRLGDILKPLNSEYGKVVPGWGTTLLMGVFM 35
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BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Match: PSBH_MICAN (Photosystem II reaction center protein H n=63 Tax=Microcystis TaxID=1125 RepID=PSBH_MICAN)

HSP 1 Score: 65.1 bits (157), Expect = 4.030e-13
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFM 105
            MA +T+LG+ILRPLNSEYGKV+PGW TTLLMG+FM
Sbjct:    1 MAQRTRLGEILRPLNSEYGKVSPGWGTTLLMGVFM 35
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92064.17270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J721_ECTSI7.800e-1691.67Photosystem II reaction center protein H n=54 Tax=... [more]
D4NY71_GALSU5.280e-1480.56Photosystem II reaction center protein H n=2 Tax=c... [more]
A0A1J0AF98_9CYAN1.410e-1382.86Photosystem II reaction center protein H n=2 Tax=C... [more]
UPI001CA63C9C1.900e-1377.14photosystem II reaction center protein PsbH n=1 Ta... [more]
PSBH_NEOYE2.150e-1380.56Photosystem II reaction center protein H n=202 Tax... [more]
UPI0019DB162F2.910e-1382.86Photosystem II reaction center protein PsbH n=1 Ta... [more]
PSBH_SYNE73.060e-1380.56Photosystem II reaction center protein H n=3 Tax=S... [more]
K9XPG5_STAC73.060e-1380.56Photosystem II reaction center protein H n=5 Tax=C... [more]
A0A2W7AEE7_9CYAN3.840e-1380.00Photosystem II reaction center protein H n=2 Tax=B... [more]
PSBH_MICAN4.030e-1380.00Photosystem II reaction center protein H n=63 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92064contigS-dermatodea_contig92064:3..110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog2880.D1J721
Preferred namepsbH
KEGG koko:K02709
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009521,GO:0009523,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009654,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796,GO:1902494,GO:1990204
EggNOG free text desc.phosphate ion binding
EggNOG OGs2E1MV@1,2S8Y7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925393.7039294-CDS-S-dermatodea_contig92064:2..1101622925393.7039294-CDS-S-dermatodea_contig92064:2..110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92064 3..110 -
1694079903.6323988-CDS-S-dermatodea_contig92064:2..1101694079903.6323988-CDS-S-dermatodea_contig92064:2..110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92064 3..110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92064.17270.1prot_S-dermatodea_contig92064.17270.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92064 3..110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92064.17270.1

>prot_S-dermatodea_contig92064.17270.1 ID=prot_S-dermatodea_contig92064.17270.1|Name=mRNA_S-dermatodea_contig92064.17270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=36bp
MAFKTKLGDILRPLNSEYGKVAPGWSTTLLMGIFML
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mRNA from alignment at S-dermatodea_contig92064:3..110-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92064.17270.1 ID=mRNA_S-dermatodea_contig92064.17270.1|Name=mRNA_S-dermatodea_contig92064.17270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at S-dermatodea_contig92064:3..110- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTTCAAAACAAAATTAGGCGATATTTTACGACCTTTAAATTCTGA
ATACGGAAAAGTAGCGCCAGGCTGGTCTACTACTTTGCTTATGGGTATAT
TTATGTTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig92064:3..110-

>mRNA_S-dermatodea_contig92064.17270.1 ID=mRNA_S-dermatodea_contig92064.17270.1|Name=mRNA_S-dermatodea_contig92064.17270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig92064:3..110- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTTCAAAACAAAATTAGGCGATATTTTACGACCTTTAAATTCTGA
ATACGGAAAAGTAGCGCCAGGCTGGTCTACTACTTTGCTTATGGGTATAT
TTATGTTAATGGCTTTCAAAACAAAATTAGGCGATATTTTACGACCTTTA
AATTCTGAATACGGAAAAGTAGCGCCAGGCTGGTCTACTACTTTGCTTAT
GGGTATATTTATGTTA
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