mRNA_S-dermatodea_contig91971.17258.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91971.17258.1
Unique NamemRNA_S-dermatodea_contig91971.17258.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig91971.17258.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.730e-21
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KAFNVPAEVGISEWLSGRLELPAGAIKDSEHVAYSTQIYIFAEGQPNALELAVALPTNKVR 183
            +AF V  EVGISEWL+GRLELP GAIKDSEHVA STQIY+ AEGQP+ALE+A+A+P+ K +
Sbjct:  703 QAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTK 763
[Close]
BLAST of mRNA_S-dermatodea_contig91971.17258.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.730e-21
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 KAFNVPAEVGISEWLSGRLELPAGAIKDSEHVAYSTQIYIFAEGQPNALELAVALPTNKVR 183
            +AF V  EVGISEWL+GRLELP GAIKDSEHVA STQIY+ AEGQP+ALE+A+A+P+ K +
Sbjct:  801 QAFLVGPEVGISEWLTGRLELPPGAIKDSEHVALSTQIYVVAEGQPDALEIAIAMPSKKTK 861
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91971.17258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJZ6_ECTSI5.730e-2172.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZX0_9PHAE5.730e-2172.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91971contigS-dermatodea_contig91971:72..254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2880.D8LJZ6
KEGG koko:K11497
EggNOG OGs29KWX@1,2RU66@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.5382843-CDS-S-dermatodea_contig91971:71..2541622925392.5382843-CDS-S-dermatodea_contig91971:71..254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91971 72..254 -
1694079902.7611768-CDS-S-dermatodea_contig91971:71..2541694079902.7611768-CDS-S-dermatodea_contig91971:71..254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91971 72..254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91971.17258.1prot_S-dermatodea_contig91971.17258.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91971 72..254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91971.17258.1

>prot_S-dermatodea_contig91971.17258.1 ID=prot_S-dermatodea_contig91971.17258.1|Name=mRNA_S-dermatodea_contig91971.17258.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
KAFNVPAEVGISEWLSGRLELPAGAIKDSEHVAYSTQIYIFAEGQPNALE
LAVALPTNKVR
back to top

mRNA from alignment at S-dermatodea_contig91971:72..254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91971.17258.1 ID=mRNA_S-dermatodea_contig91971.17258.1|Name=mRNA_S-dermatodea_contig91971.17258.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at S-dermatodea_contig91971:72..254- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCGTTTAACGTGCCTGCGGAAGTTGGGATATCGGAATGGCTGTCCGG
GAGGCTCGAGCTACCGGCCGGGGCGATCAAGGACTCGGAGCACGTGGCGT
ACAGCACCCAGATCTACATCTTCGCCGAGGGGCAGCCCAACGCCCTGGAG
CTCGCGGTCGCGTTGCCCACCAACAAGGTGAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig91971:72..254-

>mRNA_S-dermatodea_contig91971.17258.1 ID=mRNA_S-dermatodea_contig91971.17258.1|Name=mRNA_S-dermatodea_contig91971.17258.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig91971:72..254- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCGTTTAACGTGCCTGCGGAAGTTGGGATATCGGAATGGCTGTCCGG
GAGGCTCGAGCTACCGGCCGGGGCGATCAAGGACTCGGAGCACGTGGCGT
ACAGCACCCAGATCTACATCTTCGCCGAGGGGCAGCCCAACGCCCTGGAG
CTCGCGGTCGCGTTGCCCACCAACAAGGTGAGGAAGGCGTTTAACGTGCC
TGCGGAAGTTGGGATATCGGAATGGCTGTCCGGGAGGCTCGAGCTACCGG
CCGGGGCGATCAAGGACTCGGAGCACGTGGCGTACAGCACCCAGATCTAC
ATCTTCGCCGAGGGGCAGCCCAACGCCCTGGAGCTCGCGGTCGCGTTGCC
CACCAACAAGGTGAGG
back to top