mRNA_S-dermatodea_contig9193.17256.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9193.17256.1
Unique NamemRNA_S-dermatodea_contig9193.17256.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9193.17256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9193contigS-dermatodea_contig9193:7596..8228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9193.17256.1prot_S-dermatodea_contig9193.17256.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9193 7643..7999 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.3205457-UTR-S-dermatodea_contig9193:7595..76421622925392.3205457-UTR-S-dermatodea_contig9193:7595..7642Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9193 7596..7642 +
1694079902.6226783-UTR-S-dermatodea_contig9193:7595..76421694079902.6226783-UTR-S-dermatodea_contig9193:7595..7642Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9193 7596..7642 +
1622925392.3402927-UTR-S-dermatodea_contig9193:7999..82281622925392.3402927-UTR-S-dermatodea_contig9193:7999..8228Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9193 8000..8228 +
1694079902.641679-UTR-S-dermatodea_contig9193:7999..82281694079902.641679-UTR-S-dermatodea_contig9193:7999..8228Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9193 8000..8228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.330816-CDS-S-dermatodea_contig9193:7642..79991622925392.330816-CDS-S-dermatodea_contig9193:7642..7999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9193 7643..7999 +
1694079902.6316597-CDS-S-dermatodea_contig9193:7642..79991694079902.6316597-CDS-S-dermatodea_contig9193:7642..7999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9193 7643..7999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9193.17256.1

>prot_S-dermatodea_contig9193.17256.1 ID=prot_S-dermatodea_contig9193.17256.1|Name=mRNA_S-dermatodea_contig9193.17256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
MIARQDRTSQASDGSIGVVGSSHGSDTRTLPIEKFIILRFFLTGWHLSLH
FFPNRVTLLSVSDSLPRHNLEGGILNTPMTSVSCGRPRLDSCMVENRDPH
DSGKGSNAARPLSPLCFL*
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mRNA from alignment at S-dermatodea_contig9193:7596..8228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9193.17256.1 ID=mRNA_S-dermatodea_contig9193.17256.1|Name=mRNA_S-dermatodea_contig9193.17256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at S-dermatodea_contig9193:7596..8228+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCACCAAGAAAAGCCCACGCCAAAGCAAAAAAAATGTCGGTACCATATG
ATAGCAAGACAGGACAGGACAAGCCAAGCCTCGGACGGATCAATTGGAGT
CGTTGGATCTTCACACGGAAGCGACACGAGGACGCTCCCAATCGAGAAGT
TCATCATCTTGAGGTTTTTCCTCACCGGCTGGCATCTATCACTGCATTTC
TTCCCAAACAGGGTTACACTGCTGTCTGTCTCCGATTCGCTGCCCCGACA
CAATCTAGAAGGGGGAATATTAAATACCCCGATGACATCAGTAAGCTGCG
GCCGGCCTCGACTCGACAGCTGCATGGTTGAAAATCGTGACCCGCACGAC
TCGGGCAAAGGAAGCAACGCAGCCCGCCCCCTCTCCCCACTGTGTTTCCT
GTAGGCAACAGCCAACCGTTTCTTATCTAGCTTGAGATACCACGCCAACA
GAGGAAATTGTATTGCGGCGTTGAGGAAAAAGCTTGCGGTCTCTTCCCGA
GGCACGACCATCCAACCAAGGGACACTGTCTCATACTATTATATTATAAT
TTTTTATGAGCTACCAAATTGGGAAGGGGGGGGGGTCATGGTTTGATTGG
TACACCTGATCGCCCATCATACCAAGATTCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9193:7596..8228+

>mRNA_S-dermatodea_contig9193.17256.1 ID=mRNA_S-dermatodea_contig9193.17256.1|Name=mRNA_S-dermatodea_contig9193.17256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig9193:7596..8228+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATAGCAAGACAGGACAGGACAAGCCAAGCCTCGGACGGATCAATTGG
AGTCGTTGGATCTTCACACGGAAGCGACACGAGGACGCTCCCAATCGAGA
AGTTCATCATCTTGAGGTTTTTCCTCACCGGCTGGCATCTATCACTGCAT
TTCTTCCCAAACAGGGTTACACTGCTGTCTGTCTCCGATTCGCTGCCCCG
ACACAATCTAGAAGGGGGAATATTAAATACCCCGATGACATCAGTAAGCT
GCGGCCGGCCTCGACTCGACAGCTGCATGGTTGAAAATCGTGACCCGCAC
GACTCGGGCAAAGGAAGCAACGCAGCCCGCCCCCTCTCCCCACTGTGTTT
CCTGTAGATGATAGCAAGACAGGACAGGACAAGCCAAGCCTCGGACGGAT
CAATTGGAGTCGTTGGATCTTCACACGGAAGCGACACGAGGACGCTCCCA
ATCGAGAAGTTCATCATCTTGAGGTTTTTCCTCACCGGCTGGCATCTATC
ACTGCATTTCTTCCCAAACAGGGTTACACTGCTGTCTGTCTCCGATTCGC
TGCCCCGACACAATCTAGAAGGGGGAATATTAAATACCCCGATGACATCA
GTAAGCTGCGGCCGGCCTCGACTCGACAGCTGCATGGTTGAAAATCGTGA
CCCGCACGACTCGGGCAAAGGAAGCAACGCAGCCCGCCCCCTCTCCCCAC
TGTGTTTCCTGTAG
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