mRNA_S-dermatodea_contig9188.17251.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9188.17251.1
Unique NamemRNA_S-dermatodea_contig9188.17251.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9188.17251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9188contigS-dermatodea_contig9188:3982..4568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size228
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9188.17251.1prot_S-dermatodea_contig9188.17251.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9188 4041..4568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.026097-UTR-S-dermatodea_contig9188:3981..40401622925392.026097-UTR-S-dermatodea_contig9188:3981..4040Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9188 3982..4040 -
1694079902.4503758-UTR-S-dermatodea_contig9188:3981..40401694079902.4503758-UTR-S-dermatodea_contig9188:3981..4040Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9188 3982..4040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.040235-CDS-S-dermatodea_contig9188:4040..40641622925392.040235-CDS-S-dermatodea_contig9188:4040..4064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9188 4041..4064 -
1694079902.4628727-CDS-S-dermatodea_contig9188:4040..40641694079902.4628727-CDS-S-dermatodea_contig9188:4040..4064Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9188 4041..4064 -
1622925392.0494418-CDS-S-dermatodea_contig9188:4364..45681622925392.0494418-CDS-S-dermatodea_contig9188:4364..4568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9188 4365..4568 -
1694079902.4721115-CDS-S-dermatodea_contig9188:4364..45681694079902.4721115-CDS-S-dermatodea_contig9188:4364..4568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9188 4365..4568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9188.17251.1

>prot_S-dermatodea_contig9188.17251.1 ID=prot_S-dermatodea_contig9188.17251.1|Name=mRNA_S-dermatodea_contig9188.17251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=76bp
YDVLVASTSSLGKALASKYGAALPDDDADALEKLRRQEDSQVVKPLTNEE
LEAMFGPGALADQLAAEKAIGDICY*
back to top

mRNA from alignment at S-dermatodea_contig9188:3982..4568-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9188.17251.1 ID=mRNA_S-dermatodea_contig9188.17251.1|Name=mRNA_S-dermatodea_contig9188.17251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at S-dermatodea_contig9188:3982..4568- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGACGTGTTGGTCGCATCGACCTCTTCGCTGGGGAAGGCTCTTGCGTC
CAAGTACGGTGCGGCCCTCCCCGACGACGATGCTGATGCCCTCGAGAAGC
TTCGGAGGCAGGAGGACTCCCAGGTTGTAAAGCCCCTGACGAACGAGGAA
TTGGAGGCGATGTTCGGACCGGGGGCCCTTGCGGACCAGTTGGCAGCTGA
GAAGGTAAAACGCGCTCGTGTGTTATCCGCACCATCTACTTAGAGAGTTC
CGCCCGACTCACCTGGGTTGTTTCCAGGTGTCGCAGTGGGTGGTGCTTCG
CAACCTTGTGGCGCATTGTCTGCTTGGTGTACAAGTATGCTGCAGGGTTT
TGGTGGCTGGGTTGTAAACTTAACCTCTCACCACGTCCCCCTCCCCCCGG
AGAGGCTACACCCTCGCAGCTCGCCTTACTGGCATCATGGCGAACCTATT
GAAACCCCCACCCGGCGCTCCCCCTGCCCCGCTTGATGAAACCTCGGCGT
TTAGGCCATAGGAGATATATGCTATTAATAGAACAAGTGCTGCTGCCGGA
GCGTCGGCGTTGGGGGGGCAGTTGGAGCGTCAGGGGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9188:3982..4568-

>mRNA_S-dermatodea_contig9188.17251.1 ID=mRNA_S-dermatodea_contig9188.17251.1|Name=mRNA_S-dermatodea_contig9188.17251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig9188:3982..4568- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGACGTGTTGGTCGCATCGACCTCTTCGCTGGGGAAGGCTCTTGCGTC
CAAGTACGGTGCGGCCCTCCCCGACGACGATGCTGATGCCCTCGAGAAGC
TTCGGAGGCAGGAGGACTCCCAGGTTGTAAAGCCCCTGACGAACGAGGAA
TTGGAGGCGATGTTCGGACCGGGGGCCCTTGCGGACCAGTTGGCAGCTGA
GAAGTATGACGTGTTGGTCGCATCGACCTCTTCGCTGGGGAAGGCTCTTG
CGTCCAAGTACGGTGCGGCCCTCCCCGACGACGATGCTGATGCCCTCGAG
AAGCTTCGGAGGCAGGAGGACTCCCAGGTTGTAAAGCCCCTGACGAACGA
GGAATTGGAGGCGATGTTCGGACCGGGGGCCCTTGCGGACCAGTTGGCAG
CTGAGAAGGCCATAGGAGATATATGCTATTAAGCCATAGGAGATATATGC
TATTAA
back to top