mRNA_S-dermatodea_contig9184.17247.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9184.17247.1
Unique NamemRNA_S-dermatodea_contig9184.17247.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9184.17247.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 7.530e-129
Identity = 244/345 (70.72%), Postives = 289/345 (83.77%), Query Frame = 1 
Query:    1 DAKRIKQQLEVAERRVKNSLYINEAHESLAAKAAAREQEANARAAELDRRLRRALEKLDSIERKDTIVGLAASCARDQEGIHFAERELRAHQMDPELYLPVNTAKRRQLARSEQGLHRLRQRYESQSAALSNARFIERLHGNLRGAAGRGDIAETKRLLEAGVSVNVPDQARLSAFMYACGQSSVELVRIMIDAGGDVLDGDGSITGLIIAARQGSSDVLQTLIKQGSNVHARDCAGGTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLAA-STGDRGTTRVRAGE---ELVSLLLEWGASVEVKNSNGLTPMSAALDVRNRSLVLAYRGYFGQDTG 1023
            +A+RIK+QLEVAERRVKNS YINEAHESLAAKA  RE+EANARAAEL RRL RALEKL+SIERKD I+ L  SCARD+E   FAERELRAHQMDPELYLPVNTAKRRQ+ARSE+ L RLR R+ESQSAALS A+  ERLH +LR AAG GDI +T + L++G+SVNVPDQ+ LSAF+YACGQ++ ELV+I++DAGGDVLDGDG+ITGLIIAAR+G+  V+QTL++ G++V ARD AGGTAL          XXXXXXXXXXXXXXXXXXXXXXXXMLA+ S+G  G + VR GE   ++  LLLEWGAS ++KNS GLTP+SAALD RNR++VLAYR +FG+D+G
Sbjct:  172 EARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARKGTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFGEDSG 516
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BLAST of mRNA_S-dermatodea_contig9184.17247.1 vs. uniprot
Match: A0A7S2NX54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX54_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.660e-9
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:  436 AAGRGDIAETKRLLEAGVSVNVPDQARLSAFMYACGQSSVELVRIMIDAGGDVLD----GDGSITGLIIAARQGSSDVLQTLIKQGSNVHARDCAGGTAL 723
            AA   ++   K L+  G SVN PD++  SAF YACGQ S+++V+ +ID   D  D     + S+  LI+AA+    +VL+ L+  G++ + +D  G TAL
Sbjct:    6 AASDNNVDMVKELMMKGFSVNFPDESGFSAFKYACGQGSIDVVKYIIDQ--DEADINYCDEKSMPPLILAAKNAQDEVLECLLNGGADANVKDHNGRTAL 103
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BLAST of mRNA_S-dermatodea_contig9184.17247.1 vs. uniprot
Match: A0A5Q6S509_9ACTN (Ankyrin repeat domain-containing protein n=2 Tax=Nocardioidaceae TaxID=85015 RepID=A0A5Q6S509_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 5.540e-5
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:  409 ERLHGNLRGAAGRGDIAETKRLLEAGVSVNVPDQARLSAFMYACGQSSVELVRIMIDAGGDV--LDG-DGSITGLIIAARQGSSDVLQTLIKQGSNVHARDCAGGTAL 723
            + L   L  AA + D+AE +RL++AG  VN  D    SA++ A  +  + L+ + +  G DV  LD  DG  TGLI AA +G +D++  L++ G ++   +  G  AL
Sbjct:   64 DELDSRLLDAAWKNDVAEARRLIDAGADVNALDDTVQSAYLVATSEGYLRLLELTLARGADVESLDSFDG--TGLIRAAERGHADIVGRLVQAGISLDHVNNLGWVAL 169
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9184.17247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G731_ECTSI7.530e-12970.72Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7S2NX54_9STRA3.660e-938.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A5Q6S509_9ACTN5.540e-535.19Ankyrin repeat domain-containing protein n=2 Tax=N... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9184contigS-dermatodea_contig9184:2076..3418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.8
Seed ortholog evalue1.3e-105
Seed eggNOG ortholog2880.D7G731
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011230.1
Exons2
Model size1044
Cds size1044
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.8142502-CDS-S-dermatodea_contig9184:2075..27171622925391.8142502-CDS-S-dermatodea_contig9184:2075..2717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9184 2076..2717 +
1694079902.3121693-CDS-S-dermatodea_contig9184:2075..27171694079902.3121693-CDS-S-dermatodea_contig9184:2075..2717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9184 2076..2717 +
1622925391.824629-CDS-S-dermatodea_contig9184:3016..34181622925391.824629-CDS-S-dermatodea_contig9184:3016..3418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9184 3017..3418 +
1694079902.3247437-CDS-S-dermatodea_contig9184:3016..34181694079902.3247437-CDS-S-dermatodea_contig9184:3016..3418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9184 3017..3418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9184.17247.1prot_S-dermatodea_contig9184.17247.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9184 2076..3418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9184.17247.1

>prot_S-dermatodea_contig9184.17247.1 ID=prot_S-dermatodea_contig9184.17247.1|Name=mRNA_S-dermatodea_contig9184.17247.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=348bp
DAKRIKQQLEVAERRVKNSLYINEAHESLAAKAAAREQEANARAAELDRR
LRRALEKLDSIERKDTIVGLAASCARDQEGIHFAERELRAHQMDPELYLP
VNTAKRRQLARSEQGLHRLRQRYESQSAALSNARFIERLHGNLRGAAGRG
DIAETKRLLEAGVSVNVPDQARLSAFMYACGQSSVELVRIMIDAGGDVLD
GDGSITGLIIAARQGSSDVLQTLIKQGSNVHARDCAGGTALHVAARRGHV
DASRLLLEAGSDCNAVDQGTNTPLHMLAASTGDRGTTRVRAGEELVSLLL
EWGASVEVKNSNGLTPMSAALDVRNRSLVLAYRGYFGQDTGPEIAEG*
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mRNA from alignment at S-dermatodea_contig9184:2076..3418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9184.17247.1 ID=mRNA_S-dermatodea_contig9184.17247.1|Name=mRNA_S-dermatodea_contig9184.17247.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1343bp|location=Sequence derived from alignment at S-dermatodea_contig9184:2076..3418+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGCCAAACGAATCAAGCAGCAGCTGGAGGTTGCTGAACGCCGGGTGAA
AAACTCGCTGTACATCAACGAAGCGCACGAAAGCTTAGCGGCCAAAGCGG
CTGCACGAGAACAGGAGGCCAACGCCCGCGCGGCCGAACTCGATCGCCGG
CTACGGCGCGCGCTAGAAAAGCTGGATTCCATCGAGCGCAAAGATACGAT
CGTCGGTCTTGCGGCGTCCTGCGCGCGGGACCAGGAAGGAATCCATTTCG
CCGAGCGAGAGCTTCGAGCACACCAAATGGATCCCGAGCTCTATTTGCCG
GTCAACACCGCCAAGCGACGCCAGTTGGCTCGCTCAGAACAGGGGCTCCA
CCGCCTCCGACAAAGATACGAGAGTCAATCGGCCGCGTTGAGCAATGCAC
GCTTTATCGAACGACTGCATGGAAACCTTAGAGGAGCAGCCGGCCGTGGC
GACATTGCTGAGACGAAGAGGCTCTTGGAGGCAGGGGTCTCGGTCAACGT
TCCAGATCAAGCTAGACTGTCAGCGTTTATGTACGCCTGTGGCCAGTCGA
GTGTGGAGTTGGTTCGAATTATGATAGATGCCGGAGGAGACGTGCTTGAC
GGAGACGGCAGCATCACGGGGCTAATAATTGCGGCTCGTCAGGTGCGTGC
CGTATATGTTGTGTATGTGCGTCGTGCAATCAATGATGTCGTCTCTTCCT
ATTACATACGTGTACGTATCTGTGCGCCAACCGCACGAGGTCCAGCGCTC
CCAAGCATTACCGCTCTACCGCATACTGTGTTTGGTTACCTGCATACCTC
GTTCAGAGCCGAACGAAACTGCTTGAGACCCACCCTCGGGATCGCGTGCA
AAGCTGAAGCTTCAACCAAGCGGAGCAATCAGGCAACACGGTTACAGTTG
TATAGCCAACCCCCCCACAACATCCTTTCCATTTCTGACAGGGGAGTAGT
GACGTTCTCCAAACGCTCATAAAACAAGGCTCAAATGTGCACGCTCGCGA
TTGCGCCGGAGGAACGGCGTTGCACGTGGCAGCTCGACGTGGGCACGTCG
ATGCGTCCCGATTACTCCTCGAAGCGGGATCGGACTGTAACGCGGTCGAT
CAGGGGACAAACACCCCTTTGCACATGCTCGCGGCCTCTACAGGCGACCG
AGGAACCACCCGTGTTAGGGCGGGCGAGGAGCTGGTGTCCCTGCTTCTCG
AGTGGGGAGCCTCGGTAGAAGTGAAGAATTCGAACGGGCTAACCCCTATG
TCAGCCGCCCTCGACGTCCGCAATAGGTCACTCGTCTTGGCCTATAGAGG
ATATTTTGGTCAAGACACGGGCCCAGAAATCGCAGAGGGTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9184:2076..3418+

>mRNA_S-dermatodea_contig9184.17247.1 ID=mRNA_S-dermatodea_contig9184.17247.1|Name=mRNA_S-dermatodea_contig9184.17247.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2088bp|location=Sequence derived from alignment at S-dermatodea_contig9184:2076..3418+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGCCAAACGAATCAAGCAGCAGCTGGAGGTTGCTGAACGCCGGGTGAA
AAACTCGCTGTACATCAACGAAGCGCACGAAAGCTTAGCGGCCAAAGCGG
CTGCACGAGAACAGGAGGCCAACGCCCGCGCGGCCGAACTCGATCGCCGG
CTACGGCGCGCGCTAGAAAAGCTGGATTCCATCGAGCGCAAAGATACGAT
CGTCGGTCTTGCGGCGTCCTGCGCGCGGGACCAGGAAGGAATCCATTTCG
CCGAGCGAGAGCTTCGAGCACACCAAATGGATCCCGAGCTCTATTTGCCG
GTCAACACCGCCAAGCGACGCCAGTTGGCTCGCTCAGAACAGGGGCTCCA
CCGCCTCCGACAAAGATACGAGAGTCAATCGGCCGCGTTGAGCAATGCAC
GCTTTATCGAACGACTGCATGGAAACCTTAGAGGAGCAGCCGGCCGTGGC
GACATTGCTGAGACGAAGAGGCTCTTGGAGGCAGGGGTCTCGGTCAACGT
TCCAGATCAAGCTAGACTGTCAGCGTTTATGTACGCCTGTGGCCAGTCGA
GTGTGGAGTTGGTTCGAATTATGATAGATGCCGGAGGAGACGTGCTTGAC
GGAGACGGCAGCATCACGGGGCTAATAATTGCGGCTCGTCAGGATGCCAA
ACGAATCAAGCAGCAGCTGGAGGTTGCTGAACGCCGGGTGAAAAACTCGC
TGTACATCAACGAAGCGCACGAAAGCTTAGCGGCCAAAGCGGCTGCACGA
GAACAGGAGGCCAACGCCCGCGCGGCCGAACTCGATCGCCGGCTACGGCG
CGCGCTAGAAAAGCTGGATTCCATCGAGCGCAAAGATACGATCGTCGGTC
TTGCGGCGTCCTGCGCGCGGGACCAGGAAGGAATCCATTTCGCCGAGCGA
GAGCTTCGAGCACACCAAATGGATCCCGAGCTCTATTTGCCGGTCAACAC
CGCCAAGCGACGCCAGTTGGCTCGCTCAGAACAGGGGCTCCACCGCCTCC
GACAAAGATACGAGAGTCAATCGGCCGCGTTGAGCAATGCACGCTTTATC
GAACGACTGCATGGAAACCTTAGAGGAGCAGCCGGCCGTGGCGACATTGC
TGAGACGAAGAGGCTCTTGGAGGCAGGGGTCTCGGTCAACGTTCCAGATC
AAGCTAGACTGTCAGCGTTTATGTACGCCTGTGGCCAGTCGAGTGTGGAG
TTGGTTCGAATTATGATAGATGCCGGAGGAGACGTGCTTGACGGAGACGG
CAGCATCACGGGGCTAATAATTGCGGCTCGTCAGGGGAGTAGTGACGTTC
TCCAAACGCTCATAAAACAAGGCTCAAATGTGCACGCTCGCGATTGCGCC
GGAGGAACGGCGTTGCACGTGGCAGCTCGACGTGGGCACGTCGATGCGTC
CCGATTACTCCTCGAAGCGGGATCGGACTGTAACGCGGTCGATCAGGGGA
CAAACACCCCTTTGCACATGCTCGCGGCCTCTACAGGCGACCGAGGAACC
ACCCGTGTTAGGGCGGGCGAGGAGCTGGTGTCCCTGCTTCTCGAGTGGGG
AGCCTCGGTAGAAGTGAAGAATTCGAACGGGCTAACCCCTATGTCAGCCG
CCCTCGACGTCCGCAATAGGTCACTCGTCTTGGCCTATAGAGGATATTTT
GGTCAAGACACGGGCCCAGAAATCGCAGAGGGTTAAGGGAGTAGTGACGT
TCTCCAAACGCTCATAAAACAAGGCTCAAATGTGCACGCTCGCGATTGCG
CCGGAGGAACGGCGTTGCACGTGGCAGCTCGACGTGGGCACGTCGATGCG
TCCCGATTACTCCTCGAAGCGGGATCGGACTGTAACGCGGTCGATCAGGG
GACAAACACCCCTTTGCACATGCTCGCGGCCTCTACAGGCGACCGAGGAA
CCACCCGTGTTAGGGCGGGCGAGGAGCTGGTGTCCCTGCTTCTCGAGTGG
GGAGCCTCGGTAGAAGTGAAGAATTCGAACGGGCTAACCCCTATGTCAGC
CGCCCTCGACGTCCGCAATAGGTCACTCGTCTTGGCCTATAGAGGATATT
TTGGTCAAGACACGGGCCCAGAAATCGCAGAGGGTTAA
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