mRNA_S-dermatodea_contig9182.17246.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9182.17246.1
Unique NamemRNA_S-dermatodea_contig9182.17246.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9182.17246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9182contigS-dermatodea_contig9182:5801..8425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size521
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9182.17246.1prot_S-dermatodea_contig9182.17246.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9182 5920..8425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.7573862-UTR-S-dermatodea_contig9182:5800..59191622925391.7573862-UTR-S-dermatodea_contig9182:5800..5919Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9182 5801..5919 +
1694079902.268801-UTR-S-dermatodea_contig9182:5800..59191694079902.268801-UTR-S-dermatodea_contig9182:5800..5919Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9182 5801..5919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.7681124-CDS-S-dermatodea_contig9182:5919..59551622925391.7681124-CDS-S-dermatodea_contig9182:5919..5955Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9182 5920..5955 +
1694079902.2788424-CDS-S-dermatodea_contig9182:5919..59551694079902.2788424-CDS-S-dermatodea_contig9182:5919..5955Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9182 5920..5955 +
1622925391.7811115-CDS-S-dermatodea_contig9182:8059..84251622925391.7811115-CDS-S-dermatodea_contig9182:8059..8425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9182 8060..8425 +
1694079902.2955086-CDS-S-dermatodea_contig9182:8059..84251694079902.2955086-CDS-S-dermatodea_contig9182:8059..8425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9182 8060..8425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9182.17246.1

>prot_S-dermatodea_contig9182.17246.1 ID=prot_S-dermatodea_contig9182.17246.1|Name=mRNA_S-dermatodea_contig9182.17246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
MEMGDTANLSSEADAAWLDSLDFPKSDRTRCDPGAGFGGSFFRRWHLERH
ADDEFLSFWQISVVTWKRRRTPCPGNFNLGRILAPSCSSSGFLSLITMAT
SSILQSRFLLEEHDCSRRGRHCRPRNCRLQSAVG
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mRNA from alignment at S-dermatodea_contig9182:5801..8425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9182.17246.1 ID=mRNA_S-dermatodea_contig9182.17246.1|Name=mRNA_S-dermatodea_contig9182.17246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2625bp|location=Sequence derived from alignment at S-dermatodea_contig9182:5801..8425+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCTTACGAGCACAATAGGGCAGAAACGCGAAGCACTCAAAGACACGCG
GAGCACCTGTAGACACGCGAAGTTCGCGTCCATTTGACTGTTGGATTGCA
AAGGAATACCATATCTCGAATGGAGATGGGTGACACCGCCAACTTGTCGT
CCGAGGCCAACGCCGCGTGGCTCGACTCTTTGGATTTTCCTGAATCAAAT
GGAACCAAGTGTGATCCTGAGGCTGGTTTCGGCGGCTCGTTTCTCCGAAT
ATGGCACTTGGAAAGACATGCAGATGATGAGTTTCTCTCTTTCTGGCACA
TCGGTGTTGTAACCTGGAAGCGAAGGCGTACACCTTGCTCTTATGAGCAC
AATAGGGAAGACACGCGAAGCATCCGAAGGCACGCGAAGCACTCAAAGAC
ACGCGGAATTCGCGTCCATTCGACTCTTGGCTTGCGAAGGAATACCGTAT
CTCGAATGGACATGGGTGACACCGCCAACTTGTCCTTCGAGGCGGACGCC
TCGTGGCTCGACTCTTTGGATTTCCCCAAATCAAATCGAATCAAGTGTGA
TCCGGAGGCTGGTTTCGGCGGCTCGTGCTCCCGAAGATGGCACTTGGAAA
GACATGCTGGTGCTTAGTTTTCTTCTTTCCGGCACATCGGTGTCGTTACC
TGAATGGAAAGCGTACGACATGCTGTGACGAAAACGAAGTTGAAGACACG
TGAAGCACTCAAAGACACGTGGAACTCGCGTCTAATCGACTCTTGGCTTG
CGAAGGAATACCATATATCGAATGGAGATGGGTGACACCGCCAACTTGTC
GTCCGAGGTAGATGTCGCGTGGCTCAACTCTTTGCATTTTCCAAAATCAA
ATCGAATCAAGTGTGATCCCGAGGCTGGGTTCGGCGGCTCGTTTTCCCGA
AGATAGCACTTGGAAAGACATGCTGGTGCTTAGTTTCCTTCTTTCCGGCA
AACCGGTGTCGTAACCTGGGAGCGAAGGGGTGCGCCATGATGTGACGAAC
ACAATGTTGAAGACACGTGAAGCACTCAAAGACACGCGGAATGCGCGTAC
ATTCGACTCTTGGCTTGCGACTTTCCGGCACATCGGTGTCGTAACCTGGG
AGCGAAGGCGTGTCCATGATGTGACGAACACAATGTGGAAGACACGTGAA
GCACTCAAAGACACGCGGAATTCGCGTCTATTCGACTCTTGGCTTGCGAA
GGAATACCATATCTCGAATGGACATGGGTGACACCGCCAACGTGTCGGCC
GAGGCGGACGCCGCGTGGCTCGACTCTTTGGATTTTCCAAAATCAAATCG
AACCAAGTGTGATCCCGAGGCTGGTTTCGGCGGCTCATGCCCCCGAAGAT
GGCACTTGAAGACACGTCCTGGTGTGAAGTTTCTTCCTGTAGGGCGAATC
GGTGTCGTTACCTGAGAGCAAACGCGTACACCTTGCTCTCACGAGCACAA
TAGGGAAGACACGCGAAGCACTCAAAGACACGCGAAGCACCTGCAGACAC
GCGAAGTTCGCGTCCATTCGACTGTTGGATTGCAAAGGAATACCATATCT
CGAATGGACATGAGTGACACCGCCAACTTGTCGTCCGAGGCGGACGCCGC
GTGGCTCGACTCTTTGGATTTTCCTAAATCAAATCGAACCAAGTATGACT
AAGAGGCTGGTTTCGGCGGCTCGTTTTCCCGATGTTATCATTGGAAAGAC
AAGCTGATGAGGAGTTTCCTTCTTTCTGGCACATCGGTTTCGTAGCCTGG
GAGCGAAGGCGTACACCTTGCTCTTACAAGCACAATAGGGCAGACACGCG
AAGCATTCAAAGGCACGCGAAGCACTTAATGAAACCAAAGTTCGCTTGCT
TTCGACTAATGGCTTGCGAAAGAATACCATATCTCGAATGGACATGAGTG
ACACCGCCAACTTGTCGTCCGAGGCGGACGCCGCGTGGCTCGACTGTTCG
GATTTTTGTAAATCAAATCGAACCAAGTGTGATCTTGAGGCCGGTTTCGG
CGGCTCGTTTTCCCGACTATGGCTTTTGGAAAGACATGCTGGTGCGTAGT
TTCCTTCGTTTCGGCAAACCGGTGTTGTAGCCTGGAAGCGAAGGCGTACG
TCATGTCCTGACGAACACAATAGGGCAGACACGCGAAGCACTCAAAGACA
TGCGAAAGACTCGAAGACACCCGGAGTTCGCTTCCATTTGACTTTCGGCT
TGCGAAGGAATACCATATCTCGAATGGACATGGGTGACACCGCCAACTTG
TCGTCCGAGGCCGACGCCGCGTGGCTCGACTCTTTGGATTTTCCAAAATC
AGATCGAACCAGGTGTGATCCTGGGGCTGGTTTCGGCGGCTCGTTTTTCC
GAAGATGGCACTTGGAAAGACATGCTGATGATGAGTTTCTCTCTTTCTGG
CAAATCAGTGTCGTGACCTGGAAGCGAAGGCGTACGCCATGCCCTGGTAA
TTTCAATTTAGGCCGCATTCTAGCACCATCATGTTCCTCTTCCGGATTTC
TGTCCTTGATTACCATGGCAACTTCTTCCATCCTGCAGTCACGGTTTTTG
CTGGAGGAGCACGACTGTAGTCGACGGGGACGCCATTGCCGGCCACGTAA
TTGCCGCCTGCAATCTGCAGTCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9182:5801..8425+

>mRNA_S-dermatodea_contig9182.17246.1 ID=mRNA_S-dermatodea_contig9182.17246.1|Name=mRNA_S-dermatodea_contig9182.17246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig9182:5801..8425+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGATGGGTGACACCGCCAACTTGTCGTCCGAGATGGAGATGGGTGA
CACCGCCAACTTGTCGTCCGAGGCCGACGCCGCGTGGCTCGACTCTTTGG
ATTTTCCAAAATCAGATCGAACCAGGTGTGATCCTGGGGCTGGTTTCGGC
GGCTCGTTTTTCCGAAGATGGCACTTGGAAAGACATGCTGATGATGAGTT
TCTCTCTTTCTGGCAAATCAGTGTCGTGACCTGGAAGCGAAGGCGTACGC
CATGCCCTGGTAATTTCAATTTAGGCCGCATTCTAGCACCATCATGTTCC
TCTTCCGGATTTCTGTCCTTGATTACCATGGCAACTTCTTCCATCCTGCA
GTCACGGTTTTTGCTGGAGGAGCACGACTGTAGTCGACGGGGACGCCATT
GCCGGCCACGTAATTGCCGCCTGCAATCTGCAGTCGGTGCCGACGCCGCG
TGGCTCGACTCTTTGGATTTTCCAAAATCAGATCGAACCAGGTGTGATCC
TGGGGCTGGTTTCGGCGGCTCGTTTTTCCGAAGATGGCACTTGGAAAGAC
ATGCTGATGATGAGTTTCTCTCTTTCTGGCAAATCAGTGTCGTGACCTGG
AAGCGAAGGCGTACGCCATGCCCTGGTAATTTCAATTTAGGCCGCATTCT
AGCACCATCATGTTCCTCTTCCGGATTTCTGTCCTTGATTACCATGGCAA
CTTCTTCCATCCTGCAGTCACGGTTTTTGCTGGAGGAGCACGACTGTAGT
CGACGGGGACGCCATTGCCGGCCACGTAATTGCCGCCTGCAATCTGCAGT
CGGT
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