mRNA_S-dermatodea_contig9181.17245.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9181.17245.1
Unique NamemRNA_S-dermatodea_contig9181.17245.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 7.480e-20
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +ENNLTKTLR LQAESSVCL+TIDNLDNLMSDINHGRWEAV+PQV
Sbjct:   17 FLKENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQV 63
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A835ZIM7_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.710e-15
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            + +E+NLT +L+TLQ+ES VCL T+DNLDNL SDINHGRWE+V+PQV
Sbjct:   17 YLKEHNLTSSLKTLQSESKVCLDTVDNLDNLSSDINHGRWESVLPQV 63
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A7S4DJ43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ43_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 2.830e-14
Identity = 30/47 (63.83%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +EN+L +T+RTLQAES V L+T+D+++N +SDINHGRW+AV+PQV
Sbjct:   38 FCKENHLHQTMRTLQAESQVSLNTVDSMENFLSDINHGRWDAVLPQV 84
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A8H7RYM9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RYM9_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +ENNL +TL  LQ ESSV  +T+DN DNL+ DINHGRW+AV+ QV
Sbjct:   18 FLRENNLERTLGALQKESSVTFNTVDNKDNLLQDINHGRWDAVLRQV 64
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A7S3TVT7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TVT7_9SPIT)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-10
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +EN L +TL+ +Q ES V L+T+D++D L+SDINHGRW+ V+  V
Sbjct:   43 FCKENGLHRTLQAMQEESRVALNTVDSIDGLLSDINHGRWDVVLQTV 89
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A150FYG8_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FYG8_GONPE)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-10
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +EN LT++   +Q E  V L+T+D+++N +SDINHGRW+AV+PQV
Sbjct:   82 FCKENGLTESFNVIQNECQVSLNTVDSVENFVSDINHGRWDAVLPQV 128
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: K8YWD5_NANGC (WD40 repeat-containing protein SMU1 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWD5_NANGC)

HSP 1 Score: 61.6 bits (148), Expect = 8.520e-10
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQ 147
            F +ENNL +TL TLQ+ES V ++++D+++N +SD+  GRW++V+PQ
Sbjct:   76 FCKENNLHRTLHTLQSESQVAMNSVDSMENFLSDVTQGRWDSVLPQ 121
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A8J4BEX1_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BEX1_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +EN LT++   LQ E  V L+T+D+++N +SDIN+GRW+AV+PQV
Sbjct:   17 FCKENGLTESFNALQNECQVSLNTVDSVENFVSDINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A8HPU4_CHLRE (WD40 repeat-containing protein SMU1 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8HPU4_CHLRE)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +EN LT +   +Q E  V L+T+D++DNL++DIN+GRW+AV+PQV
Sbjct:   17 FCKENGLTDSFNAIQNECQVSLNTVDSVDNLVADINNGRWDAVLPQV 63
[Close]
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Match: A0A5P1ECX6_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ECX6_ASPOF)

HSP 1 Score: 59.7 bits (143), Expect = 4.060e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 FAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV 150
            F +EN+L +T +TLQ E  V L+T+D+L+  +SDIN GRW+A++PQV
Sbjct:   18 FCKENSLHQTFQTLQNECQVSLNTVDSLETFVSDINSGRWDAILPQV 64
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9181.17245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI7.480e-2089.36WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A835ZIM7_9STRA1.710e-1570.21WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A0A7S4DJ43_HETAK2.830e-1463.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8H7RYM9_9FUNG1.070e-1163.83Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A7S3TVT7_9SPIT1.660e-1053.19Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A150FYG8_GONPE3.230e-1053.19Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
K8YWD5_NANGC8.520e-1050.00WD40 repeat-containing protein SMU1 (Fragment) n=3... [more]
A0A8J4BEX1_9CHLO1.150e-953.19Uncharacterized protein n=4 Tax=Volvox africanus T... [more]
A8HPU4_CHLRE1.590e-953.19WD40 repeat-containing protein SMU1 n=3 Tax=Chlamy... [more]
A0A5P1ECX6_ASPOF4.060e-953.19Uncharacterized protein n=2 Tax=Asparagus officina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9181contigS-dermatodea_contig9181:8129..8278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D7FX60
Preferred nameSMU1
KEGG koko:K13111
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
EggNOG free text desc.regulation of alternative mRNA splicing, via spliceosome
EggNOG OGsKOG0275@1,KOG0275@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.7274184-CDS-S-dermatodea_contig9181:8128..82781622925391.7274184-CDS-S-dermatodea_contig9181:8128..8278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9181 8129..8278 +
1694079902.2484546-CDS-S-dermatodea_contig9181:8128..82781694079902.2484546-CDS-S-dermatodea_contig9181:8128..8278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9181 8129..8278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9181.17245.1prot_S-dermatodea_contig9181.17245.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9181 8129..8278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9181.17245.1

>prot_S-dermatodea_contig9181.17245.1 ID=prot_S-dermatodea_contig9181.17245.1|Name=mRNA_S-dermatodea_contig9181.17245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
MNAFAQENNLTKTLRTLQAESSVCLSTIDNLDNLMSDINHGRWEAVIPQV
back to top

mRNA from alignment at S-dermatodea_contig9181:8129..8278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9181.17245.1 ID=mRNA_S-dermatodea_contig9181.17245.1|Name=mRNA_S-dermatodea_contig9181.17245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig9181:8129..8278+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGCCTTCGCTCAGGAGAATAACCTTACGAAGACGCTTCGGACCCT
GCAGGCGGAGTCTAGCGTATGTCTCAGCACCATCGACAACCTCGATAACC
TCATGAGTGACATCAACCACGGTCGTTGGGAGGCTGTCATTCCCCAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9181:8129..8278+

>mRNA_S-dermatodea_contig9181.17245.1 ID=mRNA_S-dermatodea_contig9181.17245.1|Name=mRNA_S-dermatodea_contig9181.17245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig9181:8129..8278+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACGCCTTCGCTCAGGAGAATAACCTTACGAAGACGCTTCGGACCCT
GCAGGCGGAGTCTAGCGTATGTCTCAGCACCATCGACAACCTCGATAACC
TCATGAGTGACATCAACCACGGTCGTTGGGAGGCTGTCATTCCCCAGGTG
ATGAACGCCTTCGCTCAGGAGAATAACCTTACGAAGACGCTTCGGACCCT
GCAGGCGGAGTCTAGCGTATGTCTCAGCACCATCGACAACCTCGATAACC
TCATGAGTGACATCAACCACGGTCGTTGGGAGGCTGTCATTCCCCAGGTG
back to top