mRNA_S-dermatodea_contig9180.17244.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: D8LEB1_ECTSI (Utp13 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB1_ECTSI) HSP 1 Score: 399 bits (1026), Expect = 2.630e-123 Identity = 242/396 (61.11%), Postives = 274/396 (69.19%), Query Frame = 1
Query: 139 DKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVGVEDGDGSGSSATPGEGTKANRPLVSELKRLREGRRREGVARVGASGEDMSDSENSSSGSEDGEGRLRPVPVSEVVDGRVVFNVRLEAVDGMSAVDSSDDDDPQGDDAAGTVDVVMGDAVEH-PVAESRDKGTASPVSKPKKKRKKRENGLASPAPLGLAGQPPVD 1323
DKVWAL TA AP R E+ G NAG+VVVSGGADSVINVWKDVTAREEEK+IAE+E LLKEQELYNRLR+K+YGPAIALALELKRPQ+LW VLRDAMTEGMGEGG GG +ETTTEM+SRRLD+HV+SW+M+TI+QCL YCRDWNTNARK+VVVHALVGS+LR S+ SLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLV +G +G S T+ NRPLV ELKRLR+G+ R+ G SDSE G+ PVPVSEVVDGRVVFNVR+E A DS +++ DVVMGDA + P+ G +P LGL GQP V+
Sbjct: 724 DKVWALTTAAAPAVRRHRDEEEEVEGGGE--GPNAGIVVVSGGADSVINVWKDVTAREEEKVIAERENALLKEQELYNRLRNKEYGPAIALALELKRPQKLWGVLRDAMTEGMGEGGQGAPAGGDEETTTEMASRRLDEHVSSWTMDTISQCLGYCRDWNTNARKAVVVHALVGSILRCVSIGSLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVA--EGGPTGDSNKAAARTQTNRPLVRELKRLRDGKPRQEEEGESVDGGVESDSEG-------GDRVASPVPVSEVVDGRVVFNVRVE---NGGAGDSDSEEEXX---XVQESDVVMGDASKRDPIVVEGGXXXXXXXXXXXXXXXXXXXGAPAPTALGLVGQPVVE 1102
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A7S4KJA0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KJA0_GUITH) HSP 1 Score: 164 bits (414), Expect = 2.390e-43 Identity = 101/279 (36.20%), Postives = 152/279 (54.48%), Query Frame = 1
Query: 76 GLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVG----VEDGDGSGSSATPGEGTKANRPL 900
GL+K+WT+++ EC A+L+ H DK+WALA A GED ++ +GGAD +IN W DVTA E+K E+E L+ EQ++ N LR KDY A LA LK+P L VL+ +TE LD+ + S++ E ++ CL Y RDWNT+AR + A++ ++LR FSL L E G ++V LLPY++RHFQRL+ +Q +Y+++ TL +M+ ++G ++D + S P T+A R +
Sbjct: 1 GLLKLWTLKTSECVASLEQHEDKLWALAVA--------PGED---------------TLLATGGADGMINFWDDVTAEMEDKARQEQEENLVLEQQMMNALRAKDYKLAALLAFRLKKPFHLLQVLQSVITE--------------------KDEGLLDEIIVSFTSEQLSTCLQYLRDWNTSARNAHTSQAVLLAILRSFSLEQLCECEGIKDIVDSLLPYTQRHFQRLEDAMQRTYMLDFTLHAMRSVLGGSDKLDDEEXXXESLQPWRRTRARRAV 236
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: UPI00053FD269 (transducin beta-like protein 3 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FD269) HSP 1 Score: 166 bits (421), Expect = 3.110e-40 Identity = 96/275 (34.91%), Postives = 149/275 (54.18%), Query Frame = 1
Query: 1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
+GHT+SVL +F++ G Q VS GADGL+K+WTV S+EC AT D H DKVWALA + V+ +GG D+V+N+W D TA ++E+ ++E +L+ QEL N + D DY AI +A EL+RP+RL+ +L + E + + + K + + E + Q Y R+WNT + + ++ V S + E+ G AEL+ L+PYS+RHF R+DRL +S++L+++TL M ++
Sbjct: 573 EGHTSSVLRASFITRGTQFVSTGADGLLKLWTVTSNECIATYDEHEDKVWALAIGKKTE------------------------VLATGGGDAVVNLWSDSTAVDKEEAFRKEEEGVLRGQELENAVSDADYAKAIQIAFELRRPRRLFELLSELCRE-------------------KDAKDHMRKALQTLGKEEVRQLFEYIREWNTKPKLCHIAQFVLFQVFSMLSPKEIVEVKGVAELLEGLIPYSQRHFSRIDRLERSTFLLDYTLIGMSVI 804
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A0K9R6E2_SPIOL (Utp13 domain-containing protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9R6E2_SPIOL) HSP 1 Score: 166 bits (419), Expect = 5.720e-40 Identity = 97/275 (35.27%), Postives = 146/275 (53.09%), Query Frame = 1
Query: 1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
+GHT+SVL +F++ G Q VS GADGL+K+WTV+S+EC AT D H DKVWALA + ++ +GG D+VIN+W D TA E+E+ ++E +L+ QEL N + D DY AI +A EL+RP RL+ +L + + + + L K + E + Q Y R+WNT R ++ V S + E+ G EL+ L+PYS+RHF R+DRL +S++L+++TL M ++
Sbjct: 573 EGHTSSVLRASFITRGTQFVSSGADGLLKLWTVKSNECIATYDEHEDKVWALAIGKKTE------------------------MLATGGGDAVINIWNDSTAAEKEEAFRKEEEGVLRGQELENAVSDADYAKAIQIAFELRRPHRLYELLSELCRK-------------------KDAVDHLRKALLHLRKEEVQQLFEYIREWNTKPRLCHNAQFVLFQVFSMLSPTDIVEVKGIGELLEGLIPYSQRHFSRIDRLERSTFLLDYTLVGMSVI 804
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA) HSP 1 Score: 166 bits (419), Expect = 9.560e-40 Identity = 136/436 (31.19%), Postives = 182/436 (41.74%), Query Frame = 1
Query: 1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVG--SGEDGXXXXXXXXGGA----NAGLVVVSGGADSVINV------WKDVT--------------------------------------------------------AREEE----------------------KLIAEKEAT----------------------------LLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEG--GGTEV-------VGGGDET------------------------------TTEMSS---RRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLV 828
+GHTA VL+ FVS GAQL+SGGADGLVK+WT+R+ ECE T D H D+ WA+A + + + D GGA N + +++GGAD V+ W D T AR E L+ K T LLKEQ L N LR++++ A ALA ELKRP RLW+V++D + E TE+ V G E + E+S +D V W E I CLSYCRDWNTNA+ + V A++ ++LR L L ++ C+E++ LLPYSERH+QRLDRLLQS+YLV++TLA M+ML+
Sbjct: 657 QGHTAGVLNCEFVSGGAQLLSGGADGLVKLWTIRTSECEGTFDRHNDRAWAMALIKKTHNKSDGDTAVDNSTASRAGIGGALATVNGDVELITGGADRVLTCIERCFSWCDCTTATDMLALCXXXXXXXXXXXXXXXXXXXXXXXXXXXYHRKLTGLQYFYYRLSGSCCARSAEAISYRCLHFGNGNAWPKQGLGASLVCPKAHTVGQSGRGGSQGLHTQTNDLHRCFLMQEDLLKEQSLANSLRERNFKRAAALAFELKRPNRLWAVIKDMLAEAEKTAYEAATELCTHFEVYVAGAQENPMLSNACPYFYVRVLKQQLQVSSLPMQELESDELSDAGRESMDALVNHWDEEQIKTCLSYCRDWNTNAKTAAVAQAVITALLRCIGLERLSQVETCSEVLEALLPYSERHYQRLDRLLQSTYLVDYTLAGMRMLL 1092
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A388JWY6_CHABU (Utp13 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JWY6_CHABU) HSP 1 Score: 164 bits (416), Expect = 1.870e-39 Identity = 104/278 (37.41%), Postives = 153/278 (55.04%), Query Frame = 1
Query: 13 ASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVGVEDGD 846
AS LS A G ++ GADGLVK+WT+RS+EC T D H DK+WAL V S ++ ++ +GG+D+++N+W D TA EEE+ + E LLK+Q+L N L ++G AI L ELKRPQ+L + + G G EV+G + DK + QCL Y R+WNTN+R V ++ SVL + L E+PG EL+ L+PYS RHF+RLDRL++S++++++TL+ M +L + + D
Sbjct: 580 ASTLSDAAGFLGIAVLLLGADGLVKLWTIRSNECVNTFDYHNDKIWALT--------VNSKQE----------------MIATGGSDALVNLWADFTAAEEEEAERQAEEELLKDQDLSNALSSGEFGRAIELGFELKRPQKLLHTFAELVRAGTGREILLEVLG------------KFDKL-------RLRQCLEYVREWNTNSRYCHVAQYILQSVLEAHPMKELLEVPGMKELLVALIPYSSRHFKRLDRLVRSTFILDYTLSCMSVLFPMNEED 814
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A8J4QM25_9ROSI (Utp13 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4QM25_9ROSI) HSP 1 Score: 152 bits (385), Expect = 1.690e-37 Identity = 91/274 (33.21%), Postives = 142/274 (51.82%), Query Frame = 1
Query: 4 GHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
GHT+SVL +F++ G Q VS GADGLVK+WTV+++EC AT D H DKVWALA + ++ +GG D+VIN+W D T+ ++E+ ++E +LK QEL N + D DY AI +A EL+RP +L+ + + + E ++DK + + Y R+WNT + V ++ V + E+ G EL+ L+PYS RHF R+DR ++S++L+++TL M ++
Sbjct: 94 GHTSSVLRASFLTRGTQFVSCGADGLVKLWTVKTNECIATYDKHEDKVWALAIGKKTE------------------------MLATGGGDAVINLWYDCTSDDKEEAFRKEEEGVLKGQELENAVSDADYTKAIQIAFELRRPHKLFELFAELFRKREAE-------------------NQMDKALNAIGKGEFRLLFEYVREWNTKPKLCHVAQFVLFRVFNILPPTEIIEIKGMGELLEGLIPYSHRHFSRIDRHVRSTFLLDYTLTGMSVI 324
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: UPI0004422A2C (transducin beta-like protein 3 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI0004422A2C) HSP 1 Score: 146 bits (368), Expect = 1.030e-36 Identity = 98/274 (35.77%), Postives = 143/274 (52.19%), Query Frame = 1
Query: 1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQM 822
+GH ASVL V FVS G Q++S GADGL+K+WT++++EC TLDAH DKVW L + +D VV+G DS + +WKDVT E E+ A++E +LK+QEL N L K + A+ LA+ L RP + +V++ + E GG ++ ++ R D+ A L + WNTN R A+V +L+ S L + G V LLPY+ERH+QRL RLLQ+S ++ +M++
Sbjct: 3 EGHDASVLKVIFVSGGGQVLSSGADGLLKLWTIKNNECVKTLDAHEDKVWGLHANKK--------DD----------------TVVTGSTDSRVLLWKDVTQAELEEEQAKQEEQILKDQELANLLHKKQFLKALGLAISLDRPHTVLTVVKAILKE----------PGGKEDLAKNLTKLRKDQKEA---------VLKFSVTWNTNTRNCHEAQAVVEILLKHESPEDLLKYEGIKTAVESLLPYTERHYQRLGRLLQASMFLDFMWQNMRL 233
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A2Z7BXM5_9LAMI (Transducin beta-like protein 3 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BXM5_9LAMI) HSP 1 Score: 154 bits (388), Expect = 5.410e-36 Identity = 88/256 (34.38%), Postives = 137/256 (53.52%), Query Frame = 1
Query: 58 VSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
+S GADGLVK+WTV+++EC AT D H DK+WALA R ++ +GG D+VIN+W D TA ++E+ ++E +L+ QEL N + D DY A+ LA EL+RP +L+ + + + G+ +++K V S S E + + L Y RDWNT + V H ++ S+ + E+ G EL+ L+PY++RHF R+DRL +++L ++TLA M +L
Sbjct: 569 ISDGADGLVKLWTVKTNECVATYDQHEDKIWALAIGRKTE------------------------MIATGGGDAVINLWHDSTATDKEEAFRKEEEGVLRGQELENAIFDADYLKAVQLAFELRRPHKLFELFSELCRKSDGKS-------------------QIEKAVCSLSKEELHKLLEYTRDWNTKPKLCHVAHFVLSSLFSIIPPTEIIEIKGIGELLEGLIPYTQRHFSRVDRLESNTFLFDYTLAGMSVL 781
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A8C1D8Q1_CYPCA (Transducin (beta)-like 3 n=5 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1D8Q1_CYPCA) HSP 1 Score: 148 bits (373), Expect = 5.100e-34 Identity = 96/279 (34.41%), Postives = 145/279 (51.97%), Query Frame = 1
Query: 1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVGVE 837
+GH ASVL + FVS G QLVS G+DGLVK+WT++++EC T DAH DKVWAL GS +D ++V+G ADS I +WKDVT E + A++E +LK+QEL N L +K Y A+ +A+ L +P V+R+ + E + L+K + + A L Y WNTN+R + A++ +L S + + G + L+PY+ERH QR+ RLLQ+S +++ M++ G++
Sbjct: 548 EGHDASVLKIIFVSRGTQLVSSGSDGLVKLWTIKTNECVKTFDAHQDKVWAL--------HGGSKDD----------------LMVTGSADSTITLWKDVTEVELAEEQAKQEDQVLKQQELSNLLHEKKYLKALGIAISLDQPHTALRVIREIRQQ-------------------EDGIQELEKTLLKLRQDQKASVLRYSVVWNTNSRSCLDAQAVLQVLLTHLSPEEILQYQGTRTHLEGLIPYTERHMQRISRLLQASMFLDYMWQKMRITGGID 783 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9180.17244.1 >prot_S-dermatodea_contig9180.17244.1 ID=prot_S-dermatodea_contig9180.17244.1|Name=mRNA_S-dermatodea_contig9180.17244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=548bp KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWback to top mRNA from alignment at S-dermatodea_contig9180:4112..8617- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9180.17244.1 ID=mRNA_S-dermatodea_contig9180.17244.1|Name=mRNA_S-dermatodea_contig9180.17244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4506bp|location=Sequence derived from alignment at S-dermatodea_contig9180:4112..8617- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9180:4112..8617- >mRNA_S-dermatodea_contig9180.17244.1 ID=mRNA_S-dermatodea_contig9180.17244.1|Name=mRNA_S-dermatodea_contig9180.17244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3288bp|location=Sequence derived from alignment at S-dermatodea_contig9180:4112..8617- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |