mRNA_S-dermatodea_contig918.17243.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig918.17243.1
Unique NamemRNA_S-dermatodea_contig918.17243.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig918.17243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig918contigS-dermatodea_contig918:17648..18056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size410
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.4575331-CDS-S-dermatodea_contig918:17647..180551622925391.4575331-CDS-S-dermatodea_contig918:17647..18055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig918 17648..18055 +
1694079902.042881-CDS-S-dermatodea_contig918:17647..180551694079902.042881-CDS-S-dermatodea_contig918:17647..18055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig918 17648..18055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig918.17243.1prot_S-dermatodea_contig918.17243.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig918 17648..18055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig918.17243.1

>prot_S-dermatodea_contig918.17243.1 ID=prot_S-dermatodea_contig918.17243.1|Name=mRNA_S-dermatodea_contig918.17243.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
RHKKRRYILVRSQNKPRDMGTSQSSRAERSRIERGGTALGTKGGETAEVQ
SREKRGTARCEKRPARVRVDPEKWSTYKYYIQSQLPSHAQRLSSAMSRSM
GGSTERSTHWAGNSTHGIIKPLDNLPGGLLPPENMG
back to top

mRNA from alignment at S-dermatodea_contig918:17648..18056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig918.17243.1 ID=mRNA_S-dermatodea_contig918.17243.1|Name=mRNA_S-dermatodea_contig918.17243.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=409bp|location=Sequence derived from alignment at S-dermatodea_contig918:17648..18056+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCACAAGAAGAGGAGATATATATTGGTGAGGTCGCAGAATAAGCCAAG
GGACATGGGCACATCGCAGAGCTCAAGAGCCGAAAGGTCGAGGATAGAGA
GAGGTGGAACTGCACTCGGAACCAAAGGTGGCGAGACAGCTGAAGTGCAG
TCTCGAGAGAAGCGGGGCACGGCAAGGTGCGAGAAAAGGCCAGCGCGAGT
GAGGGTGGATCCAGAAAAGTGGAGCACGTACAAGTACTACATTCAATCGC
AGTTGCCCTCTCACGCCCAGCGGCTCTCCAGTGCCATGAGCAGGAGCATG
GGAGGCAGCACAGAGCGAAGCACGCACTGGGCTGGCAACAGTACGCACGG
AATCATCAAACCCCTGGACAACCTACCAGGGGGTCTCTTGCCACCAGAAA
ATATGGGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig918:17648..18056+

>mRNA_S-dermatodea_contig918.17243.1 ID=mRNA_S-dermatodea_contig918.17243.1|Name=mRNA_S-dermatodea_contig918.17243.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig918:17648..18056+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCACAAGAAGAGGAGATATATATTGGTGAGGTCGCAGAATAAGCCAAG
GGACATGGGCACATCGCAGAGCTCAAGAGCCGAAAGGTCGAGGATAGAGA
GAGGTGGAACTGCACTCGGAACCAAAGGTGGCGAGACAGCTGAAGTGCAG
TCTCGAGAGAAGCGGGGCACGGCAAGGTGCGAGAAAAGGCCAGCGCGAGT
GAGGGTGGATCCAGAAAAGTGGAGCACGTACAAGTACTACATTCAATCGC
AGTTGCCCTCTCACGCCCAGCGGCTCTCCAGTGCCATGAGCAGGAGCATG
GGAGGCAGCACAGAGCGAAGCACGCACTGGGCTGGCAACAGTACGCACGG
AATCATCAAACCCCTGGACAACCTACCAGGGGGTCTCTTGCCACCAGAAA
ATATGGGAAGGCACAAGAAGAGGAGATATATATTGGTGAGGTCGCAGAAT
AAGCCAAGGGACATGGGCACATCGCAGAGCTCAAGAGCCGAAAGGTCGAG
GATAGAGAGAGGTGGAACTGCACTCGGAACCAAAGGTGGCGAGACAGCTG
AAGTGCAGTCTCGAGAGAAGCGGGGCACGGCAAGGTGCGAGAAAAGGCCA
GCGCGAGTGAGGGTGGATCCAGAAAAGTGGAGCACGTACAAGTACTACAT
TCAATCGCAGTTGCCCTCTCACGCCCAGCGGCTCTCCAGTGCCATGAGCA
GGAGCATGGGAGGCAGCACAGAGCGAAGCACGCACTGGGCTGGCAACAGT
ACGCACGGAATCATCAAACCCCTGGACAACCTACCAGGGGGTCTCTTGCC
ACCAGAAAATATGGGA
back to top