mRNA_S-dermatodea_contig918.17242.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig918.17242.1
Unique NamemRNA_S-dermatodea_contig918.17242.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: D7FXJ9_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 8.860e-43
Identity = 84/180 (46.67%), Postives = 110/180 (61.11%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGS-PTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDSGA------------------------QAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL+FN FEP NLP+LI AI N +G  P +AD      Y I+TR+VARDGSG+RG+  I+G C  + S P+R+ V FTK +IEPD+GQD+DAW+ V   +D  G                         Q PA  LG   E+S ++  SP+G LDI+YLD++MRVTRG +GA+VV  R
Sbjct:  123 TLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 302          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: A0A835ZKX0_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.630e-22
Identity = 65/181 (35.91%), Postives = 89/181 (49.17%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNP---RYSINTRFVARD---GSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS--------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL FN FEP  LP+ IT I N +    +    D P    Y +   FVAR    G  +RG+  ++G C  +S +  RL+V F    + P  GQD+  W++VF  ++                      G Q PA    G +  +M+    PEG LDILYLDD +RVTRG +G++VV  R
Sbjct:  128 TLGRLAFNLFEPTKLPVSITHIVNTLEDVPAERQGDRPGELTYDLVNSFVARSPESGVELRGEVAVSGVCWPDSKDANRLRVAFGAGELRPAQGQDLAEWEAVFKPREGKEKPRVPLGKKLTNLMLKLFMGFQPPADAGQGVQRYTMNRP--PEGYLDILYLDDALRVTRGNRGSIVVVER 306          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: A0A7S4DXT7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXT7_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.490e-15
Identity = 52/178 (29.21%), Postives = 83/178 (46.63%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGSGMRGKT-----TIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            + GR+ FN F P +L + +  + N +    S +   +P  +     +    + + G+      T       + ++P RL V FT  T+EP +G DV  W+SVF     S                  G +AP G LG   ++   ++  P G LDI+YLDDD R+T+G +G+VV+  R
Sbjct:   97 SLGRMSFNMFAPRDLVVTVKKMTNTLAPLPSGESTKHPEGTAAYTVICDLKTNVEGQQLDMVFTSEAVSWPDEADPNRLAVAFTAGTLEPAEGADVKLWRSVFTSPKKSLRQRLTEPLTMWMMKKMIGLEAPKG-LGADGKLRYSMSKPPAGYLDIMYLDDDFRITKGNRGSVVIVDR 273          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: A0A846BZ97_9CYAN (Fimbrial protein n=4 Tax=unclassified Okeania TaxID=2634635 RepID=A0A846BZ97_9CYAN)

HSP 1 Score: 78.6 bits (192), Expect = 1.090e-14
Identity = 55/175 (31.43%), Postives = 79/175 (45.14%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEV---GSPTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS-----------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL FN FEP NL ++I ++   V   G       D    +SI           ++G     G C    ++ Q LQV FT  T+ P  G+D+  W+ +F     S                 G   P G    + EIS  +  SP+G L++LYLD++ R+T+G KG V+V  R
Sbjct:   79 TLGRLAFNMFEPTNLKLVIDSVRQPVVLLGEGEKRSHDIVVEFSIIDELFPP----LKGIVRNLGVCYP--ADNQNLQVEFTGGTLGPQKGEDLSTWKDIFGQNKSSKKGLKEQLMSVFLKLMFGLVPPQGMNTETGEISFTMKRSPKGRLEVLYLDEEFRITKGEKGTVLVCER 247          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: UPI00146A6814 (fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 TaxID=2546229 RepID=UPI00146A6814)

HSP 1 Score: 75.5 bits (184), Expect = 1.580e-13
Identity = 57/174 (32.76%), Postives = 78/174 (44.83%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGS-GMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL FN F+P  L ++I  +   V     ADG  +  + I   F   D    ++G+    G C   ++N  +LQV FT   +EP    D D W  VF   D S                  G   P      +  I   +  SP+G L+ILYLDDD+R+TRG KG ++V  R
Sbjct:   86 TLGRLAFNMFQPQTLKLVIDQVSQPVWP--IADGAHHT-HDIVVDFTTLDLEVPLQGRVRNLGICQPATAN--QLQVQFTGGVLEPAVDSDRDHWHQVFGDPDASPRPGLKARLQGLVLKLMFGLVPPKAMAADTGRIEFQMRRSPKGRLEILYLDDDLRITRGEKGTILVCDR 254          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: A0A6H5JYC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.490e-13
Identity = 49/151 (32.45%), Postives = 69/151 (45.70%), Query Frame = 1
Query:   85 PTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDSGAQ------------------------APAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            P  AD      Y I+T +VARDG+G+RG+  IA                      E  +GQD+DAW++V   +D  G +                         PA  LG   E+S ++  SP G  ++LYLD+++ VTRG KG +VV TR
Sbjct:    9 PEPADPAYESPYDISTHWVARDGNGLRGRVEIA----------------------ETYEGQDLDAWRNVIGVRDTEGTKEKGRLSMLKEKAAKLMLKVVFGFRGPADNLGRRGELSCEMKRSPSGHFEVLYLDEEIWVTRGHKGTLVVVTR 137          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: B7KCL7_GLOC7 (PAP_fibrillin domain-containing protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KCL7_GLOC7)

HSP 1 Score: 73.6 bits (179), Expect = 7.620e-13
Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS-----------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL FN F+PA L ++I  +   V      +      + I   F   D +  + K  +  +     S+ + LQV FT   ++P + +++++W+ VF  +                    G   P      + E+S  +  SP+G LDI+YLD+++R+T+G KG V+V  R
Sbjct:   80 TLGRLAFNMFQPAQLKLVIDRVCQPV---FPVNNGQQKSHDIIVEFTTIDDNFPQLKGIVHNFGICEPSSDRTLQVKFTGSVLKPQESENLESWKPVFKQQKSLKKTWKERLTSVMGKIMFGLVPPEEMNPQTGEVSFTMNRSPKGSLDIIYLDEELRITKGEKGTVLVCQR 248          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: R1DVL9_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVL9_EMIHU)

HSP 1 Score: 73.6 bits (179), Expect = 9.420e-13
Identity = 57/175 (32.57%), Postives = 82/175 (46.86%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNP-RYSINTRF--VARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDSGAQAP--------AGELGG---SEEISMDLT------GSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            + GR  FN F P  LP+ I +I N    P+SA    +P  Y +  +   +  D S +         C     NP R+ V F    + P DG   +AW+  F     S   +         A  L G   +EE++ D T       +PEG LDIL+LD+D+RVTRG +G++V+A R
Sbjct:   94 SLGRASFNMFAPQMLPVAIDSILN----PSSAPAPGSPGAYEVIVKLDLLLPDASPLAATMENVAECTPVDGNPGRMAVKFGGGCLRPADGAPSEAWRDTFAAPGSSADLSRMQRFQLWVARRLFGLRRAEEVTADGTMTYEMPRAPEGYLDILFLDEDLRVTRGNRGSIVIAER 264          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: UPI00082A7F03 (fimbrial protein n=2 Tax=unclassified Anabaena TaxID=2619674 RepID=UPI00082A7F03)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-12
Identity = 56/176 (31.82%), Postives = 77/176 (43.75%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPR-YSINTRFVARDGSG--MRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL FN FEP  L ++I    + V  P    G+   R + I   F   D S   + G     G C   S     LQV FT   + P +   +DAW+ VF  +                     G   P G    + E++  +  SP+G L ILYLD+++R+TRG KG V+V  R
Sbjct:   80 TLGRLAFNMFEPTKLKLVI----DRVLQPVLPVGNGEQRTHDIVVEFTTIDESSAPLSGVVRNLGVCQPASDTV--LQVKFTGGVLAPQNLNQIDAWRGVFGQQSQPKQRTFKEHLMSVFLRLMFGLVPPQGMNNTTGEVAFTMERSPKGRLSILYLDEELRITRGEKGTVLVCER 249          
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Match: A0A6B3N4N3_9CYAN (Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3N4N3_9CYAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.890e-12
Identity = 54/175 (30.86%), Postives = 77/175 (44.00%), Query Frame = 1
Query:    1 TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGS--GMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 465
            T GRL FN F+P  L ++I  +   V      +      + I   F   D S   + G     G C   S    +LQV FT  T+ P +G ++  WQ VF  +  S                  G   P      + E+S  +  SP+G L+ILYLD++MR+TRG KG ++V  R
Sbjct:   81 TLGRLAFNMFQPTQLKLVIDRVLQPV---RLLENKQQRSHDIVVEFTTIDESFPKLTGIVHNQGVCHPISDT--KLQVKFTGGTLAPQEGTNIKDWQEVFGKQRQSSQKSWQERFISGFFRLMFGLVPPQAMNPDTGEVSFTMNRSPKGSLEILYLDEEMRITRGEKGTLLVCQR 250          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig918.17242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXJ9_ECTSI8.860e-4346.67PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A835ZKX0_9STRA3.630e-2235.91PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
A0A7S4DXT7_9EUKA1.490e-1529.21Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A846BZ97_9CYAN1.090e-1431.43Fimbrial protein n=4 Tax=unclassified Okeania TaxI... [more]
UPI00146A68141.580e-1332.76fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 Ta... [more]
A0A6H5JYC1_9PHAE3.490e-1332.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7KCL7_GLOC77.620e-1327.33PAP_fibrillin domain-containing protein n=1 Tax=Gl... [more]
R1DVL9_EMIHU9.420e-1332.57Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
UPI00082A7F031.470e-1231.82fimbrial protein n=2 Tax=unclassified Anabaena Tax... [more]
A0A6B3N4N3_9CYAN2.890e-1230.86Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig918contigS-dermatodea_contig918:7655..8125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue2.1e-34
Seed eggNOG ortholog2880.D7FXJ9
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28N1U@1,2S7IC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-28_001980.1
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.6176934-CDS-S-dermatodea_contig918:7654..81251622925391.6176934-CDS-S-dermatodea_contig918:7654..8125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig918 7655..8125 +
1694079902.1751487-CDS-S-dermatodea_contig918:7654..81251694079902.1751487-CDS-S-dermatodea_contig918:7654..8125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig918 7655..8125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig918.17242.1prot_S-dermatodea_contig918.17242.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig918 7655..8125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig918.17242.1

>prot_S-dermatodea_contig918.17242.1 ID=prot_S-dermatodea_contig918.17242.1|Name=mRNA_S-dermatodea_contig918.17242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=157bp
TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARD
GSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHH
KDDSGAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAV
VVATRA*
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mRNA from alignment at S-dermatodea_contig918:7655..8125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig918.17242.1 ID=mRNA_S-dermatodea_contig918.17242.1|Name=mRNA_S-dermatodea_contig918.17242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at S-dermatodea_contig918:7655..8125+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTTCGGCCGCCTCATCTTCAACGCCTTCGAGCCTGCCAACTTACCGAT ACTCATCACCGCCATCGGCAACGAGGTTGGATCTCCCACGTCAGCAGATG GCGACGACAATCCTCGTTACAGCATCAACACGCGGTTCGTAGCACGCGAC GGCAGCGGGATGAGAGGGAAAACGACCATTGCAGGTTATTGCGCCTCGAA TTCGAGCAACCCTCAGCGCCTTCAGGTCGGATTCACGAAGGTCACGATCG AGCCCGACGACGGCCAAGATGTCGATGCCTGGCAAAGTGTTTTTCATCAC AAGGACGACAGTGGTGCCCAGGCGCCCGCGGGAGAGCTGGGGGGTAGCGA GGAGATTTCTATGGACCTTACGGGAAGCCCGGAGGGTTTGCTTGATATTC TCTACCTAGACGACGACATGAGGGTTACGCGCGGGTTCAAGGGCGCGGTT GTCGTCGCAACGCGCGCTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig918:7655..8125+

>mRNA_S-dermatodea_contig918.17242.1 ID=mRNA_S-dermatodea_contig918.17242.1|Name=mRNA_S-dermatodea_contig918.17242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at S-dermatodea_contig918:7655..8125+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTTCGGCCGCCTCATCTTCAACGCCTTCGAGCCTGCCAACTTACCGAT
ACTCATCACCGCCATCGGCAACGAGGTTGGATCTCCCACGTCAGCAGATG
GCGACGACAATCCTCGTTACAGCATCAACACGCGGTTCGTAGCACGCGAC
GGCAGCGGGATGAGAGGGAAAACGACCATTGCAGGTTATTGCGCCTCGAA
TTCGAGCAACCCTCAGCGCCTTCAGGTCGGATTCACGAAGGTCACGATCG
AGCCCGACGACGGCCAAGATGTCGATGCCTGGCAAAGTGTTTTTCATCAC
AAGGACGACAGTGGTGCCCAGGCGCCCGCGGGAGAGCTGGGGGGTAGCGA
GGAGATTTCTATGGACCTTACGGGAAGCCCGGAGGGTTTGCTTGATATTC
TCTACCTAGACGACGACATGAGGGTTACGCGCGGGTTCAAGGGCGCGGTT
GTCGTCGCAACGCGCGCTTGAACGTTCGGCCGCCTCATCTTCAACGCCTT
CGAGCCTGCCAACTTACCGATACTCATCACCGCCATCGGCAACGAGGTTG
GATCTCCCACGTCAGCAGATGGCGACGACAATCCTCGTTACAGCATCAAC
ACGCGGTTCGTAGCACGCGACGGCAGCGGGATGAGAGGGAAAACGACCAT
TGCAGGTTATTGCGCCTCGAATTCGAGCAACCCTCAGCGCCTTCAGGTCG
GATTCACGAAGGTCACGATCGAGCCCGACGACGGCCAAGATGTCGATGCC
TGGCAAAGTGTTTTTCATCACAAGGACGACAGTGGTGCCCAGGCGCCCGC
GGGAGAGCTGGGGGGTAGCGAGGAGATTTCTATGGACCTTACGGGAAGCC
CGGAGGGTTTGCTTGATATTCTCTACCTAGACGACGACATGAGGGTTACG
CGCGGGTTCAAGGGCGCGGTTGTCGTCGCAACGCGCGCTTGA
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