mRNA_S-dermatodea_contig918.17241.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: D7FXK0_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXK0_ECTSI) HSP 1 Score: 237 bits (605), Expect = 9.700e-67 Identity = 151/316 (47.78%), Postives = 172/316 (54.43%), Query Frame = 1
Query: 196 MVGPDWRVGMWTFLSIPAGTAGWACLIIFGAPDDGGGDIRRVIVIIGAVVAAITMAMYLCTACTDPGIVFKHLAPPPTETLPR---PDTNGSRSATMA-PTGAGTPVP--------------------GHGSMQEFSLAQSAAATSSTAGTGVAKPVASVGQGQGGGGVERLTGEDLEAQQMLAILTEDYRRGNGQDPSLSAPTTAAGLPPDQCIAAAETGSSAVTDMRNAPPPDSPVRASASPPAHTQPG----ATMCGRCEILRPAGAFHCNLCGVCVEKLDHXXXXXXXXVGRKTLVPFYIFVVAVWSLMIYV 1059
MVGPDWRVG WTF+SIPAGT GW CLIIFGAPDDGG +R +IV IG +A +TMA YL TACTDPGIVFKH A P T P +G RSA +A GAGTPVP +E AQ A AT T ED+EAQQ+L ILT+DYR G + GLPP+ C AAA+ GS AV DMRN P G AT+CGRC+I RP GA HC LCGVCV+KLDH VGRKTLVPFY+FVV+VW L++YV
Sbjct: 1 MVGPDWRVGAWTFVSIPAGTVGWGCLIIFGAPDDGGDMLRTIIVAIGGGLALVTMAFYLSTACTDPGIVFKHTATPVRGTPAAGHGPRGSGGRSALLALSAGAGTPVPTGXXXXXXXXXXXXXXXXXXXXXXAEEGKEAQGAGATWGT--------------------------EDVEAQQILDILTDDYREGAKSHEVATVAAAEEGLPPEDCAAAADAGSKAVADMRNVPXXXXXXXXXXPRQRGATVGGGDSATICGRCQIERPPGAVHCTLCGVCVQKLDHHCPFMGQCVGRKTLVPFYLFVVSVWFLIVYV 290
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: D7FXJ9_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ9_ECTSI) HSP 1 Score: 216 bits (549), Expect = 3.590e-59 Identity = 111/220 (50.45%), Postives = 142/220 (64.55%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGEDFGGTTRTVDGIECTFGRLIFNAFEPANLPILITAIGNEVGS-PTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDSGA------------------------QAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
L+N NPT+ P +AWPL SG W S+GEDF GTTRT DG+ECT GRL+FN FEP NLP+LI AI N +G P +AD Y I+TR+VARDGSG+RG+ I+G C + S P+R+ V FTK +IEPD+GQD+DAW+ V +D G Q PA LG E+S ++ SP+G LDI+YLD++MRVTRG +GA+VV R
Sbjct: 83 LANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIGDRPENADPAYESNYVISTRWVARDGSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKDKGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 302
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: A0A835ZKX0_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX0_9STRA) HSP 1 Score: 122 bits (307), Expect = 7.300e-27 Identity = 81/222 (36.49%), Postives = 110/222 (49.55%), Query Frame = -3
Query: 2917 ALSNLNPTTEPGRAWPLLSGSWVSIGEDFGGTTRTVDGIECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNP---RYSINTRFVARD---GSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS--------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3504
ALS NPTT+ LL G++ + G +F R G ECT GRL FN FEP LP+ IT I N + + D P Y + FVAR G +RG+ ++G C +S + RL+V F + P GQD+ W++VF ++ G Q PA G + +M+ PEG LDILYLDD +RVTRG +G++VV R
Sbjct: 87 ALSKTNPTTDGALQRELLKGAFATTGFNFPDGKRGPLGWECTLGRLAFNLFEPTKLPVSITHIVNTLEDVPAERQGDRPGELTYDLVNSFVARSPESGVELRGEVAVSGVCWPDSKDANRLRVAFGAGELRPAQGQDLAEWEAVFKPREGKEKPRVPLGKKLTNLMLKLFMGFQPPADAGQGVQRYTMNRP--PEGYLDILYLDDALRVTRGNRGSIVVVER 306
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: A0A1Z4N4X8_9CYAN (PAP_fibrillin domain-containing protein n=5 Tax=Nostocales TaxID=1161 RepID=A0A1Z4N4X8_9CYAN) HSP 1 Score: 92.4 bits (228), Expect = 5.650e-17 Identity = 69/218 (31.65%), Postives = 104/218 (47.71%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDGIEC-TFGRLIFNAFEPANLPILITAIGNEVGSPTSADGD-DNPRYSINTRFVARDGS--GMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
L +LNP T P R+ LL +W+ I +F G + DG C T GRL FN F+P L + + V P G+ + + I F D S + G G C S LQV FT ++P D Q+++ W++VF ++ S G P G + EIS + SP+G L+ILY+D+++R+TRG + A++V+ R
Sbjct: 38 LQSLNPITAPARSDTLLDSNWLLISAPNFPGGEQLADGSFCYTLGRLAFNMFQPTGLKVTL----QRVSQPVFLLGNGEQHSHDIVVEFTTIDESVPKLSGIVRNQGVCQVVSDTT--LQVEFTGGILQPQDNQNLEEWKAVFGNQQPSARRSFKDILMSGFLNLMFGLVPPQGMDADTGEISFTMRRSPKGRLEILYVDEELRITRGEREAILVSER 249
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: A0A6B3N4N3_9CYAN (Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3N4N3_9CYAN) HSP 1 Score: 92.0 bits (227), Expect = 7.810e-17 Identity = 70/217 (32.26%), Postives = 98/217 (45.16%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDG-IECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGS--GMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
L+ LNPTT P R+ LL W+ I +F G + DG T GRL FN F+P L ++I + V + + I F D S + G G C S +LQV FT T+ P +G ++ WQ VF + S G P + E+S + SP+G L+ILYLD++MR+TRG KG ++V R
Sbjct: 39 LTQLNPTTAPARSETLLDSEWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPV---RLLENKQQRSHDIVVEFTTIDESFPKLTGIVHNQGVCHPISDT--KLQVKFTGGTLAPQEGTNIKDWQEVFGKQRQSSQKSWQERFISGFFRLMFGLVPPQAMNPDTGEVSFTMNRSPKGSLEILYLDEEMRITRGEKGTLLVCQR 250
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: UPI00146A6814 (fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 TaxID=2546229 RepID=UPI00146A6814) HSP 1 Score: 90.9 bits (224), Expect = 2.150e-16 Identity = 72/216 (33.33%), Postives = 95/216 (43.98%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDGI-ECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGS-GMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
L+ LNPT P +A L G W I F G DG T GRL FN F+P L ++I + V ADG + + I F D ++G+ G C ++N +LQV FT +EP D D W VF D S G P + I + SP+G L+ILYLDDD+R+TRG KG ++V R
Sbjct: 44 LATLNPTPAPAQATDRLEGDWRLISAPSFPGGELLADGCYSYTLGRLAFNMFQPQTLKLVIDQVSQPVWP--IADGAHHT-HDIVVDFTTLDLEVPLQGRVRNLGICQPATAN--QLQVQFTGGVLEPAVDSDRDHWHQVFGDPDASPRPGLKARLQGLVLKLMFGLVPPKAMAADTGRIEFQMRRSPKGRLEILYLDDDLRITRGEKGTILVCDR 254
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: A0A6B3MA84_9CYAN (Fimbrial protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3MA84_9CYAN) HSP 1 Score: 90.5 bits (223), Expect = 2.630e-16 Identity = 64/215 (29.77%), Postives = 97/215 (45.12%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDG-IECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDSGAQA------------------PAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
L+ LNPTT P R+ LL W+ I +F G + DG T GRL FN F+P L ++I + V + + I F D S + + + + LQV FT T+ P +G ++ WQ+VF + G ++ P + E+S + SP G L+ILYLD ++R+TRG KG ++V+ R
Sbjct: 39 LTQLNPTTAPARSETLLDSQWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPV---RLLENKQQRSHDIVVEFTTIDESFPKLSGIVKNQGVCHPISDTLLQVKFTGGTLAPQEGMNIKDWQAVFGKQHQPGKKSWQEKLMSGFFKLIFGLVPPKAMNPDTGEVSFTMNRSPRGSLEILYLDQELRITRGNKGTLLVSER 250
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: B7KCL7_GLOC7 (PAP_fibrillin domain-containing protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KCL7_GLOC7) HSP 1 Score: 89.0 bits (219), Expect = 8.680e-16 Identity = 63/214 (29.44%), Postives = 100/214 (46.73%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDG-IECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS-----------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
LS LN T+P R LL G W+ I +F G T +G T GRL FN F+PA L ++I + V + + I F D + + K + + S+ + LQV FT ++P + +++++W+ VF + G P + E+S + SP+G LDI+YLD+++R+T+G KG V+V R
Sbjct: 38 LSALNSITDPTRHDTLLDGEWLLISAPNFPGGELTDEGKYSYTLGRLAFNMFQPAQLKLVIDRVCQPV---FPVNNGQQKSHDIIVEFTTIDDNFPQLKGIVHNFGICEPSSDRTLQVKFTGSVLKPQESENLESWKPVFKQQKSLKKTWKERLTSVMGKIMFGLVPPEEMNPQTGEVSFTMNRSPKGSLDIIYLDEELRITKGEKGTVLVCQR 248
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: A0A6P0MSS1_9CYAN (Fimbrial protein n=1 Tax=Symploca sp. SIO2C1 TaxID=2607783 RepID=A0A6P0MSS1_9CYAN) HSP 1 Score: 87.8 bits (216), Expect = 2.150e-15 Identity = 70/218 (32.11%), Postives = 99/218 (45.41%), Query Frame = -3
Query: 2917 LSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDG-IECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGD-DNPRYSINTRFVARDGS--GMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHHKDDS------------------GAQAPAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3501
L LNPTT P R+ LL W+ I +F G + DG T GRL FN F+P L ++I + V P GD + + I F D S +RG G C S LQV FT + P ++ WQ++F + S G P G + E++ + +P+G L+ILYLD+++R+TRG KG V+V R
Sbjct: 38 LHQLNPTTAPARSRELLDHQWLLINAPNFPGGEQLADGKYAYTLGRLAFNMFQPTGLKLVI----DRVLQPILLLGDAEQQSHDIIVEFTTIDESLPQVRGIVRNQGVCYPVSDTV--LQVQFTGGILAPHPSTNIKDWQAIFTEQHQSSQKSWQEKLMSGFLKLMFGLVPPQGINPETREVAFTMKRAPKGRLEILYLDEELRITRGQKGTVLVCQR 249
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Match: A0A7S4M390_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M390_9EUKA) HSP 1 Score: 86.3 bits (212), Expect = 9.630e-15 Identity = 63/214 (29.44%), Postives = 103/214 (48.13%), Query Frame = -3
Query: 2917 ALSNLNPTTEPGRAWPLLSGSWVSIGE-DFGGTTRTVDG-IECTFGRLIFNAFEPANLPILITAIGNEVGSPTSADGDDNPRYSINTRFVARDGSGMRGKTTIAGYCASNSSNPQRLQVGFTKVTIEPDDGQDVDAWQSVFHH----KDDSGAQ------------APAGELGGSEEISMDLTGSPEGLLDILYLDDDMRVTRGFKGAVVVATR 3504
ALS L P+ P R LL G+W I ++ G T+ DG + T GRL F FEP +L + IGN + + + +G + DG M + + + ++++ +RL V F+ ++P D +AW+ F K A+ E+ +E+ +T +P+G LD+LYLDD++R+TRG +G++VV R
Sbjct: 54 ALSALCPSEAPARDQGLL-GAWTQINSPEYSGGTQNADGTFDYTLGRLSFGIFEPKDLMCTLGPIGNPLKA-SEVEGTIEYEIQVPMSINIEDGPPMTAE--LLNFATCSAASDERLTVEFSGGVLQPTGECDREAWRKTFGPALAAKPGKRARLMDWLLGKMMGLVKPKEMSDGDEMRYQMTKAPKGYLDVLYLDDELRITRGNRGSLVVCER 263 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig918.17241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig918.17241.1 >prot_S-dermatodea_contig918.17241.1 ID=prot_S-dermatodea_contig918.17241.1|Name=mRNA_S-dermatodea_contig918.17241.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=341bp MTAPEPFHWCCRDGAKRLDKHWLLWGRPRSRFPMQGMVGPDWRVGMWTFLback to top mRNA from alignment at S-dermatodea_contig918:6802..16059- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig918.17241.1 ID=mRNA_S-dermatodea_contig918.17241.1|Name=mRNA_S-dermatodea_contig918.17241.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=9258bp|location=Sequence derived from alignment at S-dermatodea_contig918:6802..16059- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig918:6802..16059- >mRNA_S-dermatodea_contig918.17241.1 ID=mRNA_S-dermatodea_contig918.17241.1|Name=mRNA_S-dermatodea_contig918.17241.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at S-dermatodea_contig918:6802..16059- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |