mRNA_S-dermatodea_contig91749.17236.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91749.17236.1
Unique NamemRNA_S-dermatodea_contig91749.17236.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91749.17236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91749contigS-dermatodea_contig91749:54..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91749.17236.1prot_S-dermatodea_contig91749.17236.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91749 54..414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.080633-CDS-S-dermatodea_contig91749:53..2661622925391.080633-CDS-S-dermatodea_contig91749:53..266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91749 54..266 -
1694079901.785027-CDS-S-dermatodea_contig91749:53..2661694079901.785027-CDS-S-dermatodea_contig91749:53..266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91749 54..266 -
1622925391.09228-CDS-S-dermatodea_contig91749:369..4141622925391.09228-CDS-S-dermatodea_contig91749:369..414Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91749 370..414 -
1694079901.7958448-CDS-S-dermatodea_contig91749:369..4141694079901.7958448-CDS-S-dermatodea_contig91749:369..414Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91749 370..414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.1019912-UTR-S-dermatodea_contig91749:414..4231622925391.1019912-UTR-S-dermatodea_contig91749:414..423Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91749 415..423 -
1694079901.8066468-UTR-S-dermatodea_contig91749:414..4231694079901.8066468-UTR-S-dermatodea_contig91749:414..423Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91749 415..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91749.17236.1

>prot_S-dermatodea_contig91749.17236.1 ID=prot_S-dermatodea_contig91749.17236.1|Name=mRNA_S-dermatodea_contig91749.17236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
MVLHHREHFEALLAKGEFGPVENPGDSGDMIWVVEYLTELLYSNFDATTS
KDSVGGGGTDTSGVTDGLFHLCGFSSVVAGLSGADG
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mRNA from alignment at S-dermatodea_contig91749:54..423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91749.17236.1 ID=mRNA_S-dermatodea_contig91749.17236.1|Name=mRNA_S-dermatodea_contig91749.17236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=370bp|location=Sequence derived from alignment at S-dermatodea_contig91749:54..423- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCCGACATGGTGCTGCACCATAGGGAGCATTTCGAGGCTCTTCTCGC
TAAGGTCAGACAGCACTCAACATTCCAGCTGTAACATGTCGTAAAGTTCA
TGAATTTAGTTTTGATTTAATTTCATTTCAAACTGTTATCATTTTGTTTT
AATACAGGGAGAGTTCGGGCCCGTCGAGAACCCTGGTGACTCCGGTGACA
TGATTTGGGTGGTGGAATACCTCACGGAGCTTCTCTACTCCAACTTCGAT
GCGACCACCAGCAAGGATTCGGTCGGCGGTGGGGGGACCGATACGTCTGG
GGTTACCGACGGCCTTTTCCACCTGTGTGGGTTTTCATCGGTAGTTGCTG
GTCTCAGTGGTGCTGACGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig91749:54..423-

>mRNA_S-dermatodea_contig91749.17236.1 ID=mRNA_S-dermatodea_contig91749.17236.1|Name=mRNA_S-dermatodea_contig91749.17236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig91749:54..423- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCTGCACCATAGGGAGCATTTCGAGGCTCTTCTCGCTAAGATGGT
GCTGCACCATAGGGAGCATTTCGAGGCTCTTCTCGCTAAGGGAGAGTTCG
GGCCCGTCGAGAACCCTGGTGACTCCGGTGACATGATTTGGGTGGTGGAA
TACCTCACGGAGCTTCTCTACTCCAACTTCGATGCGACCACCAGCAAGGA
TTCGGTCGGCGGTGGGGGGACCGATACGTCTGGGGTTACCGACGGCCTTT
TCCACCTGTGTGGGTTTTCATCGGTAGTTGCTGGTCTCAGTGGTGCTGAC
GGGGGAGAGTTCGGGCCCGTCGAGAACCCTGGTGACTCCGGTGACATGAT
TTGGGTGGTGGAATACCTCACGGAGCTTCTCTACTCCAACTTCGATGCGA
CCACCAGCAAGGATTCGGTCGGCGGTGGGGGGACCGATACGTCTGGGGTT
ACCGACGGCCTTTTCCACCTGTGTGGGTTTTCATCGGTAGTTGCTGGTCT
CAGTGGTGCTGACGGG
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