mRNA_S-dermatodea_contig91687.17232.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91687.17232.1
Unique NamemRNA_S-dermatodea_contig91687.17232.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: D8LU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU49_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 6.120e-21
Identity = 46/55 (83.64%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ 171
            +ML LVAENAALEDALYYLD+GVTD VIT++VFL+E+RRLARKQFVARATMKKV+
Sbjct:  178 QMLRLVAENAALEDALYYLDLGVTDSVITVDVFLREIRRLARKQFVARATMKKVE 232
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: A0A835ZFB1_9STRA (UEV domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.180e-14
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQA 174
            ++L LVAENAA+EDALYYLD G+TDG ++ + FL+EVRRL R+QF ARA   KV A
Sbjct:  320 QLLSLVAENAAIEDALYYLDQGITDGRLSTDEFLREVRRLTRRQFAARALANKVVA 375
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: A0A6P4EG22_DRORH (tumor susceptibility gene 101 protein-like n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=A0A6P4EG22_DRORH)

HSP 1 Score: 63.5 bits (153), Expect = 6.160e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L   A+ AA EDA+YYL  G+  GVI +E FLK VR+L+RKQF+ RATM+K +  AGL
Sbjct:  119 QLLNAYADEAATEDAIYYLGEGLRGGVIDLETFLKHVRQLSRKQFILRATMQKCRQKAGL 178
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: UPI000626C650 (tumor susceptibility gene 101 protein n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000626C650)

HSP 1 Score: 65.1 bits (157), Expect = 8.030e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 FVRMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATM 159
            F +ML L AE AA+EDA+YYL  G+  GVI +EVFLK+VR L+R+QF+ RA M
Sbjct:  357 FKQMLDLFAEEAAIEDAIYYLGEGLRRGVIDLEVFLKQVRHLSRRQFMLRALM 409
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: UPI0012D3CA8D (tumor susceptibility gene 101 protein isoform X1 n=2 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D3CA8D)

HSP 1 Score: 63.5 bits (153), Expect = 2.790e-10
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L   AE AA+ED++YY+   + +GV+ +EVFLK VR+L+RKQFV RATM+K +  AGL
Sbjct:  343 QLLNAYAEEAAIEDSIYYIGEALRNGVLDLEVFLKHVRQLSRKQFVLRATMQKCRQKAGL 402
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: Q9VVA7_DROME (Tumor suppressor protein 101 n=23 Tax=Sophophora TaxID=32341 RepID=Q9VVA7_DROME)

HSP 1 Score: 63.5 bits (153), Expect = 2.800e-10
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L   A+ AA EDA+YYL  G+  GVI +E FLK VR+L+RKQF+ RATM+K +  AGL
Sbjct:  347 QLLNAYADEAATEDAIYYLGEGLRGGVIDLETFLKHVRQLSRKQFILRATMQKCRQKAGL 406
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: A0A6B2EJS6_9DIPT (Putative vacuolar sorting protein/ubiquitin receptor vps23 n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EJS6_9DIPT)

HSP 1 Score: 62.8 bits (151), Expect = 5.190e-10
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L + A+ AA EDA+YYL  G+ +GVI +EVFLK VR+L+RKQFV R  M+K +  AGL
Sbjct:  334 QLLNVYADEAATEDAIYYLGEGLRNGVIDLEVFLKHVRQLSRKQFVLRILMQKCRQKAGL 393
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: B4H4C4_DROPE (GL20850 n=4 Tax=obscura group TaxID=32355 RepID=B4H4C4_DROPE)

HSP 1 Score: 62.8 bits (151), Expect = 5.240e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L   A+ AA EDA+YYL  G+  GVI +E FLK VR L+RKQF+ RATM+K +  AGL
Sbjct:  347 QLLNAYADEAATEDAIYYLGEGLRGGVIDLETFLKHVRTLSRKQFILRATMQKCRQKAGL 406
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BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: B4LE79_DROVI (Uncharacterized protein n=10 Tax=Drosophila TaxID=32281 RepID=B4LE79_DROVI)

HSP 1 Score: 62.8 bits (151), Expect = 5.240e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L   A+ AA EDA+YYL  G+  GVI +E FLK VR L+RKQF+ RATM+K +  AGL
Sbjct:  348 QLLNAYADEAATEDAIYYLGEGLRGGVIDLETFLKHVRTLSRKQFILRATMQKCRQKAGL 407
[Close]
BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Match: A0A0M4F1U6_DROBS (TSG101 n=1 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M4F1U6_DROBS)

HSP 1 Score: 62.8 bits (151), Expect = 5.240e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    7 RMLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATMKKVQ--AGL 180
            ++L   A+ AA EDA+YYL  G+  GVI +E FLK VR L+RKQF+ RATM+K +  AGL
Sbjct:  348 QLLNAYADEAATEDAIYYLGEGLRGGVIDLETFLKHVRTLSRKQFILRATMQKCRQKAGL 407
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91687.17232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU49_ECTSI6.120e-2183.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFB1_9STRA8.180e-1464.29UEV domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6P4EG22_DRORH6.160e-1155.00tumor susceptibility gene 101 protein-like n=1 Tax... [more]
UPI000626C6508.030e-1160.38tumor susceptibility gene 101 protein n=1 Tax=Atha... [more]
UPI0012D3CA8D2.790e-1053.33tumor susceptibility gene 101 protein isoform X1 n... [more]
Q9VVA7_DROME2.800e-1055.00Tumor suppressor protein 101 n=23 Tax=Sophophora T... [more]
A0A6B2EJS6_9DIPT5.190e-1055.00Putative vacuolar sorting protein/ubiquitin recept... [more]
B4H4C4_DROPE5.240e-1055.00GL20850 n=4 Tax=obscura group TaxID=32355 RepID=B4... [more]
B4LE79_DROVI5.240e-1055.00Uncharacterized protein n=10 Tax=Drosophila TaxID=... [more]
A0A0M4F1U6_DROBS5.240e-1055.00TSG101 n=1 Tax=Drosophila busckii TaxID=30019 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91687contigS-dermatodea_contig91687:284..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D8LU49
Preferred nameTSG101
KEGG koko:K08576,ko:K11974,ko:K12183
KEGG Pathwayko04144,ko04217,ko04621,map04144,map04217,map04621
KEGG ModuleM00409
GOsGO:0000813,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005771,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006469,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006810,GO:0006858,GO:0006887,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007050,GO:0007163,GO:0007175,GO:0007176,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008285,GO:0008333,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009913,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0016567,GO:0017157,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030011,GO:0030100,GO:0030154,GO:0030163,GO:0030182,GO:0030216,GO:0030374,GO:0030587,GO:0030855,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031410,GO:0031625,GO:0031974,GO:0031981,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032509,GO:0032510,GO:0032801,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033043,GO:0033673,GO:0035088,GO:0035090,GO:0036211,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040008,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042127,GO:0042325,GO:0042326,GO:0042551,GO:0042802,GO:0042803,GO:0043086,GO:0043112,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043230,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043408,GO:0043412,GO:0043549,GO:0043588,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045570,GO:0045571,GO:0045786,GO:0045807,GO:0045859,GO:0045892,GO:0045921,GO:0045926,GO:0045934,GO:0045935,GO:0045936,GO:0046620,GO:0046621,GO:0046755,GO:0046790,GO:0046903,GO:0046907,GO:0046983,GO:0048306,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048638,GO:0048640,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050792,GO:0050793,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051603,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051726,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0061097,GO:0061099,GO:0061245,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070062,GO:0070201,GO:0070647,GO:0070925,GO:0071695,GO:0071704,GO:0071840,GO:0071900,GO:0071944,GO:0071985,GO:0080090,GO:0090087,GO:0090702,GO:0097159,GO:0097352,GO:0097708,GO:0097734,GO:0098588,GO:0098796,GO:0098805,GO:0099120,GO:0140110,GO:0140112,GO:1901184,GO:1901185,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902115,GO:1902186,GO:1902188,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903551,GO:1903561,GO:1903772,GO:1903774,GO:1903827,GO:1903829,GO:1903900,GO:1903902,GO:1904951,GO:1990182,GO:2000026,GO:2000112,GO:2000113,GO:2000272,GO:2000395,GO:2000397,GO:2001141
EggNOG free text desc.Tumor susceptibility
EggNOG OGsKOG2391@1,KOG2391@2759
EC2.3.2.31
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04121,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.887726-CDS-S-dermatodea_contig91687:283..4571622925390.887726-CDS-S-dermatodea_contig91687:283..457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91687 284..457 -
1694079901.6718147-CDS-S-dermatodea_contig91687:283..4571694079901.6718147-CDS-S-dermatodea_contig91687:283..457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91687 284..457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.8980727-UTR-S-dermatodea_contig91687:457..4661622925390.8980727-UTR-S-dermatodea_contig91687:457..466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91687 458..466 -
1694079901.684663-UTR-S-dermatodea_contig91687:457..4661694079901.684663-UTR-S-dermatodea_contig91687:457..466Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91687 458..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91687.17232.1prot_S-dermatodea_contig91687.17232.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91687 284..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91687.17232.1

>prot_S-dermatodea_contig91687.17232.1 ID=prot_S-dermatodea_contig91687.17232.1|Name=mRNA_S-dermatodea_contig91687.17232.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
MLGLVAENAALEDALYYLDVGVTDGVITMEVFLKEVRRLARKQFVARATM
KKVQAGL*
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mRNA from alignment at S-dermatodea_contig91687:284..466-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91687.17232.1 ID=mRNA_S-dermatodea_contig91687.17232.1|Name=mRNA_S-dermatodea_contig91687.17232.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at S-dermatodea_contig91687:284..466- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGTCAGGATGCTCGGCCTGGTTGCCGAGAACGCTGCCTTGGAGGACGC
CCTGTATTACCTGGATGTGGGCGTGACCGACGGAGTGATCACTATGGAGG
TGTTCCTCAAGGAGGTCAGGAGATTGGCGAGGAAGCAGTTTGTCGCCAGG
GCGACCATGAAGAAGGTACAAGCAGGGTTGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig91687:284..466-

>mRNA_S-dermatodea_contig91687.17232.1 ID=mRNA_S-dermatodea_contig91687.17232.1|Name=mRNA_S-dermatodea_contig91687.17232.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig91687:284..466- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGGCCTGGTTGCCGAGAACGCTGCCTTGGAGGACGCCCTGTATTA
CCTGGATGTGGGCGTGACCGACGGAGTGATCACTATGGAGGTGTTCCTCA
AGGAGGTCAGGAGATTGGCGAGGAAGCAGTTTGTCGCCAGGGCGACCATG
AAGAAGGTACAAGCAGGGTTGTAGATGCTCGGCCTGGTTGCCGAGAACGC
TGCCTTGGAGGACGCCCTGTATTACCTGGATGTGGGCGTGACCGACGGAG
TGATCACTATGGAGGTGTTCCTCAAGGAGGTCAGGAGATTGGCGAGGAAG
CAGTTTGTCGCCAGGGCGACCATGAAGAAGGTACAAGCAGGGTTGTAG
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