mRNA_S-dermatodea_contig91679.17231.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91679.17231.1
Unique NamemRNA_S-dermatodea_contig91679.17231.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A6H5KYK6_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYK6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.490e-14
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +VAGRS+ +T+LRD G+G RV +K+IIEAVDKSLKRL TDYIDLLQ+
Sbjct:  163 KVAGRSDRLTWLRDDGKGTRVNRKNIIEAVDKSLKRLDTDYIDLLQI 209          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: L1JG80_GUITC (Aldo_ket_red domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JG80_GUITC)

HSP 1 Score: 64.7 bits (156), Expect = 5.620e-11
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +V G+S  + + RD G+G RV KK ++E+V+KSLKRLQTDYIDLLQ+
Sbjct:   87 KVCGKSSRLKWFRDDGQGTRVTKKQVVESVEKSLKRLQTDYIDLLQI 133          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A061S078_9CHLO (Aldo keto reductase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S078_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 8.090e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +VAG SE +TYLR++GEG R+ +  I+E+VDKSL RL TDYIDLLQ+
Sbjct:  122 KVAGASERLTYLRENGEGARLTRSQILESVDKSLARLGTDYIDLLQL 168          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A835Z0T2_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.220e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +VAGR+  + +LR SGE  RVRK DIIE+VDKSL+RL TDY+DLLQV
Sbjct:  139 KVAGRAAHLGHLRSSGEPTRVRKADIIESVDKSLQRLGTDYLDLLQV 185          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A836CJ26_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ26_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +V GR +  TY+R SG+ PRVR+ DI+E+VD SL+RL TDY+DLLQV
Sbjct:  104 KVCGRQDTNTYIRKSGQPPRVRRADIVESVDASLQRLGTDYLDLLQV 150          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A0K9P236_ZOSMR (Aldo_ket_red domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P236_ZOSMR)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-9
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +VAG SE M YLRD G+  RV   ++ E+V+KSL RL TDYIDLLQ+
Sbjct:   36 KVAGCSESMNYLRDHGKKHRVDASNVKESVEKSLNRLNTDYIDLLQI 82          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: F0XXK7_AURAN (Aldo_ket_red domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXK7_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.860e-9
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            ++ G SE +T++RD G G RV K+D+ E VD SLKRL TDY+DLLQ+
Sbjct:  111 KICGASERITWVRDDGRGTRVTKRDMEEGVDASLKRLGTDYVDLLQI 157          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A2K1JQA4_PHYPA (Aldo_ket_red domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQA4_PHYPA)

HSP 1 Score: 60.5 bits (145), Expect = 1.890e-9
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +VAG SE  TY+RD+G+  RV +++I E+VDKSLKRL TD+IDLLQ+
Sbjct:  135 KVAGYSENRTYIRDNGKTVRVDEENITESVDKSLKRLGTDHIDLLQI 181          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: A0A0K9PLG4_ZOSMR (Oxidoreductase Tas aldo/keto reductase family protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PLG4_ZOSMR)

HSP 1 Score: 59.7 bits (143), Expect = 3.550e-9
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +VAG SE   YLRD G+ PRV   ++ E+V+KSLKRL TDYIDLLQ+
Sbjct:  159 KVAGCSERPNYLRDDGKTPRVDASNVKESVEKSLKRLNTDYIDLLQI 205          
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Match: R0ICY5_9BRAS (Aldo_ket_red domain-containing protein n=6 Tax=Camelineae TaxID=980083 RepID=R0ICY5_9BRAS)

HSP 1 Score: 59.7 bits (143), Expect = 3.560e-9
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 QVAGRSEGMTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV 141
            +V+G SE  TYLRDSGE  RV   +I E+V+KSLKRL TDY+DLLQ+
Sbjct:  181 KVSGYSERSTYLRDSGEVLRVNAANIKESVEKSLKRLGTDYVDLLQI 227          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91679.17231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYK6_9PHAE8.490e-1472.34Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
L1JG80_GUITC5.620e-1159.57Aldo_ket_red domain-containing protein n=1 Tax=Gui... [more]
A0A061S078_9CHLO8.090e-1163.83Aldo keto reductase n=2 Tax=Tetraselmis sp. GSL018... [more]
A0A835Z0T2_9STRA8.220e-1168.09NADP-dependent oxidoreductase domain-containing pr... [more]
A0A836CJ26_9STRA1.500e-1061.70NADP-dependent oxidoreductase domain-containing pr... [more]
A0A0K9P236_ZOSMR1.160e-959.57Aldo_ket_red domain-containing protein n=1 Tax=Zos... [more]
F0XXK7_AURAN1.860e-957.45Aldo_ket_red domain-containing protein n=1 Tax=Aur... [more]
A0A2K1JQA4_PHYPA1.890e-961.70Aldo_ket_red domain-containing protein n=2 Tax=Phy... [more]
A0A0K9PLG4_ZOSMR3.550e-961.70Oxidoreductase Tas aldo/keto reductase family prot... [more]
R0ICY5_9BRAS3.560e-963.83Aldo_ket_red domain-containing protein n=6 Tax=Cam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91679contigS-dermatodea_contig91679:12..152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.2e-08
Seed eggNOG ortholog2880.D8LAT8
KEGG koko:K09338,ko:K14521
KEGG Pathwayko03008,map03008
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.8500197-UTR-S-dermatodea_contig91679:11..351622925390.8500197-UTR-S-dermatodea_contig91679:11..35Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91679 12..35 +
1694079901.6354165-UTR-S-dermatodea_contig91679:11..351694079901.6354165-UTR-S-dermatodea_contig91679:11..35Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91679 12..35 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.8604603-CDS-S-dermatodea_contig91679:35..1521622925390.8604603-CDS-S-dermatodea_contig91679:35..152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91679 36..152 +
1694079901.6570377-CDS-S-dermatodea_contig91679:35..1521694079901.6570377-CDS-S-dermatodea_contig91679:35..152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91679 36..152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91679.17231.1prot_S-dermatodea_contig91679.17231.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91679 36..152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91679.17231.1

>prot_S-dermatodea_contig91679.17231.1 ID=prot_S-dermatodea_contig91679.17231.1|Name=mRNA_S-dermatodea_contig91679.17231.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=39bp
MTYLRDSGEGPRVRKKDIIEAVDKSLKRLQTDYIDLLQV
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mRNA from alignment at S-dermatodea_contig91679:12..152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91679.17231.1 ID=mRNA_S-dermatodea_contig91679.17231.1|Name=mRNA_S-dermatodea_contig91679.17231.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at S-dermatodea_contig91679:12..152+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGCCGGCAGGAGCGAGGGGATGACGTACCTCAGAGACAGCGGGGA GGGGCCCAGGGTGCGGAAAAAAGATATCATCGAGGCCGTCGACAAATCGC TCAAGAGGCTGCAGACAGACTACATCGACCTACTGCAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig91679:12..152+

>mRNA_S-dermatodea_contig91679.17231.1 ID=mRNA_S-dermatodea_contig91679.17231.1|Name=mRNA_S-dermatodea_contig91679.17231.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig91679:12..152+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTACCTCAGAGACAGCGGGGAGGGGCCCAGGGTGCGGAAAAAAGA
TATCATCGAGGCCGTCGACAAATCGCTCAAGAGGCTGCAGACAGACTACA
TCGACCTACTGCAGGTGATGACGTACCTCAGAGACAGCGGGGAGGGGCCC
AGGGTGCGGAAAAAAGATATCATCGAGGCCGTCGACAAATCGCTCAAGAG
GCTGCAGACAGACTACATCGACCTACTGCAGGTG
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