mRNA_S-dermatodea_contig9165.17230.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9165.17230.1
Unique NamemRNA_S-dermatodea_contig9165.17230.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: D7G8X2_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X2_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.850e-32
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHT 210
            T+  QGGKLSQYDRSLFQRLEANDHPV++LD QYRMHPTISAFPSATFYD KLKDG NV +P Y RAFHT
Sbjct:  527 TVFSQGGKLSQYDRSLFQRLEANDHPVQMLDVQYRMHPTISAFPSATFYDGKLKDGGNVSMPAYSRAFHT 596
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: A0A6H5JH06_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH06_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.380e-28
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHT 210
            T+  QGGKLSQYDRSLFQRLEANDHPV++LD QYRMHPTISA   ATFYD KLKDG NV +P Y RAFHT
Sbjct:  454 TVFSQGGKLSQYDRSLFQRLEANDHPVQMLDVQYRMHPTISA---ATFYDGKLKDGGNVTMPAYSRAFHT 520
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: A0A7S1FTM4_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FTM4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.220e-19
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAF--HTARR 219
            T+    G+ +++DRSLFQRLE   HPV +LDTQYRMHP ISAFP A FYD +L+DGPNV+   Y R    H  RR
Sbjct:  173 TIFSVSGRNTKFDRSLFQRLEDAGHPVHMLDTQYRMHPAISAFPRAIFYDGRLQDGPNVRGNDYGRPLRDHVLRR 247
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: W7TG92_9STRA (Helicase sen1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG92_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.510e-17
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHT--ARRRFSF 231
            T+    G  + ++RSLF+RLE   HPV LLDTQYRMHP ISAFP   FY K LKDG NV  P Y R +H   A + F+F
Sbjct:  389 TVFSSLGAATAFERSLFERLEHGGHPVHLLDTQYRMHPAISAFPRRYFYGKLLKDGENVFSPAYSRPWHAFPAFQPFAF 467
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: A0A4D9CTX5_9STRA (WW domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTX5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.530e-17
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHT--ARRRFSF 231
            T+    G  + ++RSLF+RLE   HPV LLDTQYRMHP ISAFP   FY K LKDG NV  P Y R +H   A + F+F
Sbjct:  898 TVFSSLGAATAFERSLFERLEHGGHPVHLLDTQYRMHPAISAFPRRYFYGKLLKDGENVFSPAYSRPWHAFPAFQPFTF 976
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: T0R7T3_SAPDV (Helicase ATP-binding domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R7T3_SAPDV)

HSP 1 Score: 82.0 bits (201), Expect = 1.850e-16
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHTARRRF 225
            T+  +    S Y+RSLF+RLE+  HPV +L TQYR HPTISAFP A FY   L+DG NVK P Y + +H+    F
Sbjct:  936 TVFSRTSAQSLYERSLFERLESCGHPVHMLRTQYRSHPTISAFPRAYFYGGLLQDGDNVKTPAYIKPYHSLAPAF 1010
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: A0A3A2ZD03_9EURO (tRNA-splicing endonuclease (Fragment) n=1 Tax=Aspergillus sclerotialis TaxID=2070753 RepID=A0A3A2ZD03_9EURO)

HSP 1 Score: 78.2 bits (191), Expect = 2.080e-16
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 TLVEQGGKLSQYDRSLFQRLEANDHP--VELLDTQYRMHPTISAFPSATFYDKKLKDGPNV---KLPPYDRAFHTARRRF 225
            T++ +     QY++SLF R++AN HP  V LLDTQYRMHP ISAFPSA FYD +L+DGPN+   +  P+  + H +  RF
Sbjct:   48 TVLSRVASRFQYEQSLFVRMQAN-HPKDVHLLDTQYRMHPEISAFPSAAFYDGRLQDGPNMGSLRASPWHHSEHLSPYRF 126
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: X6LYL3_RETFI (Regulator of nonsense transcripts n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LYL3_RETFI)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   43 SLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHTARRRF 225
            SLF+RL  + +PV LLDTQYRMHP IS FP+A FY+ +LK+G NV  P Y +AFHT  + F
Sbjct:  276 SLFERLMCSGYPVHLLDTQYRMHPEISFFPNAHFYNNQLKNGENVSGPTYYKAFHTKSKDF 336
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: A0A6G0XTH2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTH2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.240e-15
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   28 SQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHTARRRF 225
            S Y+RSLF+RLE+  HPV +L TQYR HPTISAFP   FY   L+DG NV+ P Y + +H+    F
Sbjct:  981 SLYERSLFERLESCGHPVHMLRTQYRSHPTISAFPRQYFYGGLLQDGDNVRQPTYSKLYHSLGPAF 1046
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BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Match: A0A7S2QTD2_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QTD2_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 3.060e-15
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   34 YDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYDKKLKDGPNVKLPPYDRAFHTARR 219
            Y +SLF+RL    HPV +LDTQYRMHP IS+FPS  FY+ +L D PNV+   + ++FHT  R
Sbjct:  949 YQQSLFERLARAGHPVVMLDTQYRMHPDISSFPSKHFYNSRLSDAPNVQSEAWQKSFHTDSR 1010
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9165.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8X2_ECTSI2.850e-3282.86WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JH06_9PHAE4.380e-2878.57WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S1FTM4_9STRA4.220e-1957.33Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
W7TG92_9STRA1.510e-1754.43Helicase sen1 (Fragment) n=1 Tax=Nannochloropsis g... [more]
A0A4D9CTX5_9STRA1.530e-1754.43WW domain-containing protein n=1 Tax=Nannochlorops... [more]
T0R7T3_SAPDV1.850e-1652.00Helicase ATP-binding domain-containing protein n=2... [more]
A0A3A2ZD03_9EURO2.080e-1651.25tRNA-splicing endonuclease (Fragment) n=1 Tax=Aspe... [more]
X6LYL3_RETFI2.210e-1559.02Regulator of nonsense transcripts n=1 Tax=Reticulo... [more]
A0A6G0XTH2_9STRA2.240e-1554.55Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2QTD2_9EUKA3.060e-1554.84Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9165contigS-dermatodea_contig9165:6599..7736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.6e-27
Seed eggNOG ortholog2880.D7G8X2
KEGG koko:K10706
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.787872-CDS-S-dermatodea_contig9165:6598..66981622925390.787872-CDS-S-dermatodea_contig9165:6598..6698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9165 6599..6698 -
1694079901.6101215-CDS-S-dermatodea_contig9165:6598..66981694079901.6101215-CDS-S-dermatodea_contig9165:6598..6698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9165 6599..6698 -
1622925390.8101618-CDS-S-dermatodea_contig9165:7602..77361622925390.8101618-CDS-S-dermatodea_contig9165:7602..7736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9165 7603..7736 -
1694079901.623546-CDS-S-dermatodea_contig9165:7602..77361694079901.623546-CDS-S-dermatodea_contig9165:7602..7736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9165 7603..7736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9165.17230.1prot_S-dermatodea_contig9165.17230.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9165 6599..7736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9165.17230.1

>prot_S-dermatodea_contig9165.17230.1 ID=prot_S-dermatodea_contig9165.17230.1|Name=mRNA_S-dermatodea_contig9165.17230.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
TLVEQGGKLSQYDRSLFQRLEANDHPVELLDTQYRMHPTISAFPSATFYD
KKLKDGPNVKLPPYDRAFHTARRRFSF*
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mRNA from alignment at S-dermatodea_contig9165:6599..7736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9165.17230.1 ID=mRNA_S-dermatodea_contig9165.17230.1|Name=mRNA_S-dermatodea_contig9165.17230.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1138bp|location=Sequence derived from alignment at S-dermatodea_contig9165:6599..7736- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACTTGTGGAGCAGGGGGGAAAGCTTTCACAGTACGACCGGAGCCTATT
TCAGAGGCTGGAGGCGAATGATCACCCGGTGGAGCTGCTCGACACGCAGT
ACCGGATGCACCCGACAATATCCGCCTTCCCCAGGTGTGTTCCTTCACAT
GCGTTCGTATTGTTGTACTCTAATACTTCTGCAATAGATGCGGCGGTGTG
CTCGCGAGAATCATCATGCATCTGTCTACCTCCCCTTTTGCTTCCAACTA
CCTAAGGAAGGCCCGTTAAAACGCACGTAGTCGTGCACATAGTGTAGTTT
CTTCGTGCCTGAAATATTGTCTTCGTGCACGTAGTGTAGTTTTGGAGCTG
CTCGTCGCTCGCTTGTGTGACGAAGGGCTAGGTGAGTGAGATGTGTCTGT
GAGGTGACAATACGACAATTCTTGAAGTACGCGAGTTCCGAGGCCTGCCC
CATCTGCTTTCGAGAATATGCGTCGATTCCTTCCTTTTATGTGCTATGTA
TGTATTGGCAGGTGATTCCGTAGGGTGTTTTCGATCTCTCGATTTCTCAT
CTGACCACGAGCGAGATCGGCAACCATCACTATTATGGTGGGCTGGTCGG
TTGCAAACGTGATATATAATCAAATCAATCAATCAACGGATCAATAGGCG
AGGGTAGTCCGCGCTGGAACCACTCCGCCGGCAGAGCAAACACGCGCTGC
ACGCCGATTGAGTTCGGTAGAAGAGCAAAAAAGGTGCTCGTGCGTGTCAT
CAGTGTGACCCAGACTCCAAATATATCGTGTGCTTTCTCCACTTCCTCGA
CACTCCCACCATCTTATCATGACTGCAGCAAAAATTATTGTTTTTTCGTT
TGGTCGTGATTCTTTCGGTTCATTTATGTTTCAACAGGGGGTCGACTCGG
TCTCTGCTATTGCATTTGTCTTGTGGCCCCGCCTGGATTCTTGGACTGGT
AATTGATGTAAGGCCACCGTCATAATCGGGTTCCGTCCCCACGCCCCCCT
TTTTCCCGTATAATTGTTTAATTTATTGTCTGTGGCAGCGCTACGTTCTA
CGACAAGAAACTCAAGGACGGGCCTAACGTGAAGCTTCCACCGTACGATC
GGGCGTTCCACACGGCAAGAAGGCGTTTTTCTTTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9165:6599..7736-

>mRNA_S-dermatodea_contig9165.17230.1 ID=mRNA_S-dermatodea_contig9165.17230.1|Name=mRNA_S-dermatodea_contig9165.17230.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig9165:6599..7736- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACTTGTGGAGCAGGGGGGAAAGCTTTCACAGTACGACCGGAGCCTATT
TCAGAGGCTGGAGGCGAATGATCACCCGGTGGAGCTGCTCGACACGCAGT
ACCGGATGCACCCGACAATATCCGCCTTCCCCAGACACTTGTGGAGCAGG
GGGGAAAGCTTTCACAGTACGACCGGAGCCTATTTCAGAGGCTGGAGGCG
AATGATCACCCGGTGGAGCTGCTCGACACGCAGTACCGGATGCACCCGAC
AATATCCGCCTTCCCCAGCGCTACGTTCTACGACAAGAAACTCAAGGACG
GGCCTAACGTGAAGCTTCCACCGTACGATCGGGCGTTCCACACGGCAAGA
AGGCGTTTTTCTTTTTGACGCTACGTTCTACGACAAGAAACTCAAGGACG
GGCCTAACGTGAAGCTTCCACCGTACGATCGGGCGTTCCACACGGCAAGA
AGGCGTTTTTCTTTTTGA
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