mRNA_S-dermatodea_contig91595.17225.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91595.17225.1
Unique NamemRNA_S-dermatodea_contig91595.17225.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.610e-50
Identity = 88/121 (72.73%), Postives = 105/121 (86.78%), Query Frame = 1
Query:   31 LQCTTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            +Q TT+ FA++MG++V+PKDV L+FTVDQGGNVVNAC+ L VEV+KC A+RLNS T+W+LGI GS +T +N AM KLMKRLAA VGVFSHSAVNNDELK+IQ LQEEF  IY+LIRRNDTR
Sbjct:    1 MQLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTR 121          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 4.040e-48
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 1
Query:   40 TTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            TT+ FA++MG++V+PKDV L+FTVDQGGNVVNAC+ L VEV+KC A+RLNS T+W+LGI GS +T +N AM KLMKRLAA VGVFSHSAVNNDELK+IQ LQEEF  IY+LIRRNDTR
Sbjct:  332 TTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTR 449          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.410e-43
Identity = 78/120 (65.00%), Postives = 99/120 (82.50%), Query Frame = 1
Query:   34 QCTTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            + T + FA+ MG+DV+PKDV L+FTVDQGGNVVNACK LGV V+KC  +R+N+A +W+LGIAG+ +  +NK MG LMK+LAA VGVFSHSAVNND+LKE+Q L+E+   +Y LIRRNDTR
Sbjct:  340 ELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTR 457          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.540e-40
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   34 QCTTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDT 390
            Q T + F   MG+ V+P DV L+FTVDQGGNVVNAC  LGV+V+KC  +R+NSA +W+LGIAGS  TC+N  MG LMK+LAA VGVFS SAVNN  LKE+Q L+ +  RIY+L+RRNDT
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNN-MLKELQRLETDLHRIYELMRRNDT 123          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 7.000e-40
Identity = 74/118 (62.71%), Postives = 93/118 (78.81%), Query Frame = 1
Query:   40 TTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            T + F+  MG+ V+P DV L+FTVDQG N++NAC  LGV V++C  +RLN+A +W+LGIAG  +   N AMG LMK+LAA VGVFSHSAVNNDELKE+Q L+E F RIY+L+RRNDTR
Sbjct:  344 TLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTR 459          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.100e-39
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   40 TTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            T + F+  MG+ V+P DV L+FTVDQG N++NAC  LGV V++C  +RLN+A +W+LGIAG  +   N AMG LMK+LAA VGVFSHSAVNNDELKE+Q L+E F RIY+L+R NDTR
Sbjct:  149 TLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRPNDTR 264          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 7.580e-38
Identity = 74/118 (62.71%), Postives = 90/118 (76.27%), Query Frame = 1
Query:   40 TTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            T + F +LMG  V+ +DV L+FTVDQG NVVNAC  LGV V++C  +R+NSA +W+LGIAGS  TCKNK M    K+LAA VGVFSHSAVNND LKE+Q L+ +  RIY+ IRRNDTR
Sbjct:  153 TLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTR 266          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 7.030e-37
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   40 TTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            T +   +LMG  V+ +DV L+FTVDQG NVVNAC  LGV V++C  +R+NSA +W+LGIAGS  TCKNK M    K+LAA VGVFSHSAVNND LKE+Q L+ +  RIY+ IRRNDTR
Sbjct:  153 TLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRLEADLHRIYETIRRNDTR 266          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.270e-36
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   40 TTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYD 369
            T + F +L+G  V+P DV L FTVDQG N+VNA   LGV V++C  +R+NSA +W+LGIAG  +TCKNK MG LMK+LAA VGVFSHSAVNND LKEIQ L+ +  R+Y+
Sbjct:  150 TLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRLEADLHRVYE 259          
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.200e-35
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 1
Query:   64 MGQDVKPKDVILSFTVDQGGNVVNACKKLGVEVIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAVNNDELKEIQELQEEFVRIYDLIRRNDTR 393
            MG+ V P +  L+FTVDQG N++NAC  L V V++C  +R+N+A +W+LGIA   +  KN  MG LMK+LAA VGVFSHSAVNNDELKE+Q L+E F RIY+L+RRNDTR
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAAKGR--KNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRLEEGFSRIYELLRRNDTR 108          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91595.17225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.610e-5072.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.040e-4873.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.410e-4365.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.540e-4063.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE7.000e-4062.71Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE3.100e-3961.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE7.580e-3862.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE7.030e-3761.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE4.270e-3660.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.200e-3560.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91595contigS-dermatodea_contig91595:60..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.1205707-CDS-S-dermatodea_contig91595:59..4431622925390.1205707-CDS-S-dermatodea_contig91595:59..443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91595 60..443 -
1694079901.1011128-CDS-S-dermatodea_contig91595:59..4431694079901.1011128-CDS-S-dermatodea_contig91595:59..443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91595 60..443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.1316504-UTR-S-dermatodea_contig91595:443..4521622925390.1316504-UTR-S-dermatodea_contig91595:443..452Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91595 444..452 -
1694079901.1114674-UTR-S-dermatodea_contig91595:443..4521694079901.1114674-UTR-S-dermatodea_contig91595:443..452Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91595 444..452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91595.17225.1prot_S-dermatodea_contig91595.17225.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91595 60..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91595.17225.1

>prot_S-dermatodea_contig91595.17225.1 ID=prot_S-dermatodea_contig91595.17225.1|Name=mRNA_S-dermatodea_contig91595.17225.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
MMHSFPSLQCTTDVFAELMGQDVKPKDVILSFTVDQGGNVVNACKKLGVE
VIKCKANRLNSATIWSLGIAGSDKTCKNKAMGKLMKRLAACVGVFSHSAV
NNDELKEIQELQEEFVRIYDLIRRNDTR
back to top

mRNA from alignment at S-dermatodea_contig91595:60..452-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91595.17225.1 ID=mRNA_S-dermatodea_contig91595.17225.1|Name=mRNA_S-dermatodea_contig91595.17225.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at S-dermatodea_contig91595:60..452- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTCCGCGCATGATGCATTCCTTCCCGTCTCTGCAGTGTACAACAGATGT CTTCGCGGAGTTGATGGGCCAAGACGTCAAGCCAAAAGACGTAATTCTCT CGTTTACCGTTGATCAAGGCGGAAACGTGGTAAACGCCTGTAAAAAGCTA GGTGTAGAGGTGATAAAATGCAAAGCCAACCGCCTCAACTCCGCTACCAT TTGGAGTTTGGGAATTGCTGGCTCGGACAAGACATGCAAGAACAAGGCGA TGGGGAAGCTCATGAAGAGGCTTGCGGCATGTGTGGGAGTGTTCAGCCAC TCGGCGGTGAACAACGACGAGCTGAAGGAGATCCAGGAGTTGCAAGAGGA GTTCGTCAGGATCTATGACCTCATCCGAAGAAACGACACAAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig91595:60..452-

>mRNA_S-dermatodea_contig91595.17225.1 ID=mRNA_S-dermatodea_contig91595.17225.1|Name=mRNA_S-dermatodea_contig91595.17225.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig91595:60..452- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGCATTCCTTCCCGTCTCTGCAGTGTACAACAGATGTCTTCGCGGA
GTTGATGGGCCAAGACGTCAAGCCAAAAGACGTAATTCTCTCGTTTACCG
TTGATCAAGGCGGAAACGTGGTAAACGCCTGTAAAAAGCTAGGTGTAGAG
GTGATAAAATGCAAAGCCAACCGCCTCAACTCCGCTACCATTTGGAGTTT
GGGAATTGCTGGCTCGGACAAGACATGCAAGAACAAGGCGATGGGGAAGC
TCATGAAGAGGCTTGCGGCATGTGTGGGAGTGTTCAGCCACTCGGCGGTG
AACAACGACGAGCTGAAGGAGATCCAGGAGTTGCAAGAGGAGTTCGTCAG
GATCTATGACCTCATCCGAAGAAACGACACAAGGATGATGCATTCCTTCC
CGTCTCTGCAGTGTACAACAGATGTCTTCGCGGAGTTGATGGGCCAAGAC
GTCAAGCCAAAAGACGTAATTCTCTCGTTTACCGTTGATCAAGGCGGAAA
CGTGGTAAACGCCTGTAAAAAGCTAGGTGTAGAGGTGATAAAATGCAAAG
CCAACCGCCTCAACTCCGCTACCATTTGGAGTTTGGGAATTGCTGGCTCG
GACAAGACATGCAAGAACAAGGCGATGGGGAAGCTCATGAAGAGGCTTGC
GGCATGTGTGGGAGTGTTCAGCCACTCGGCGGTGAACAACGACGAGCTGA
AGGAGATCCAGGAGTTGCAAGAGGAGTTCGTCAGGATCTATGACCTCATC
CGAAGAAACGACACAAGG
back to top