mRNA_S-dermatodea_contig9148.17221.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9148.17221.1
Unique NamemRNA_S-dermatodea_contig9148.17221.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: D7FJ92_ECTSI (ER membrane protein complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ92_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.490e-19
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSYYKV 144
            QVVSLDRRFLDPRRP +EPTKTEKEEKL+QYQP+LPVVPTQ+LSY+KV
Sbjct:  938 QVVSLDRRFLDPRRPQEEPTKTEKEEKLIQYQPYLPVVPTQVLSYHKV 985
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A7S0MQZ2_9CRYP (ER membrane protein complex subunit 1 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MQZ2_9CRYP)

HSP 1 Score: 60.5 bits (145), Expect = 1.980e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            QV+SLDRRFLDPRRP  +PT  + EE L+ Y P LPV+PT +LSY
Sbjct:  203 QVLSLDRRFLDPRRPTAKPTPEDLEEGLVPYAPVLPVMPTAVLSY 247
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A7S2Y1Q6_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.330e-8
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            QVVSLDRR LDPRRP   P K E+ E L +Y PFLPV PT +++Y
Sbjct:  124 QVVSLDRRLLDPRRPDHNPKKDEQAEGLKRYDPFLPVTPTLVVTY 168
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A7S0E1R2_9CRYP (ER membrane protein complex subunit 1 n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E1R2_9CRYP)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-8
Identity = 24/45 (53.33%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            Q++S+D++ LDPRRP+ +P+  + EE L+ Y PFLPV+PT +LSY
Sbjct:  848 QILSIDKKLLDPRRPVGKPSPDDMEEGLMPYSPFLPVMPTAVLSY 892
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: L1JCH9_GUITC (ER membrane protein complex subunit 1 n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JCH9_GUITC)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            Q+ S+D++ LDPRRP+ +P+  + EE L+ Y PFLPV+PT +LSY
Sbjct:  852 QIFSIDKKLLDPRRPIGKPSPDDMEEGLMPYSPFLPVMPTAVLSY 896
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A7R9YCV5_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCV5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.820e-8
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            QV  LDRR LDPRRP+D P K++KEE L+QY P LP+  T+ ++Y
Sbjct:  900 QVFMLDRRLLDPRRPMDAPKKSQKEEGLVQYTPHLPLHSTRFVNY 944
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A6S8AGA4_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8AGA4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.330e-8
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    4 VVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            VVS+DRRFLDPRRP+  PTK E EE L+ Y   +PV+P +I++Y
Sbjct:  918 VVSIDRRFLDPRRPIGTPTKQEAEEGLIAYFGEIPVIPQKIITY 961
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A835YVX9_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   13 LDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            LDRR+LDPRRP+ EP+  EK+E+L+Q+QPFLPV    +L+Y
Sbjct:  949 LDRRWLDPRRPVAEPSAAEKDERLVQWQPFLPVSRQAVLTY 989
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A7S2E850_9STRA (ER membrane protein complex subunit 1 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E850_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSY 135
            Q++SLD+RFLDPRRP  E  ++EK+E L++Y P LP+V  +  SY
Sbjct:  986 QIISLDKRFLDPRRPSGELKESEKKEGLMKYSPILPIVSLRTPSY 1030
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BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Match: A0A7S2VHT5_9STRA (ER membrane protein complex subunit 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHT5_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.350e-6
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVP 117
            QV+SLDRRFLDPRRP  +  ++EK E L++Y P LP++P
Sbjct:   26 QVISLDRRFLDPRRPNGDLKESEKMEGLMKYAPMLPIIP 64
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9148.17221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FJ92_ECTSI1.490e-1987.50ER membrane protein complex subunit 1 n=2 Tax=Ecto... [more]
A0A7S0MQZ2_9CRYP1.980e-964.44ER membrane protein complex subunit 1 n=1 Tax=Cryp... [more]
A0A7S2Y1Q6_9STRA1.330e-862.22ER membrane protein complex subunit 1 n=1 Tax=Fibr... [more]
A0A7S0E1R2_9CRYP1.430e-853.33ER membrane protein complex subunit 1 n=1 Tax=Hanu... [more]
L1JCH9_GUITC1.950e-853.33ER membrane protein complex subunit 1 n=3 Tax=Guil... [more]
A0A7R9YCV5_9STRA6.820e-857.78ER membrane protein complex subunit 1 n=1 Tax=Ping... [more]
A0A6S8AGA4_9STRA9.330e-859.09ER membrane protein complex subunit 1 n=1 Tax=Apla... [more]
A0A835YVX9_9STRA1.750e-760.98ER membrane protein complex subunit 1 n=1 Tax=Trib... [more]
A0A7S2E850_9STRA1.140e-653.33ER membrane protein complex subunit 1 n=2 Tax=Dity... [more]
A0A7S2VHT5_9STRA1.350e-658.97ER membrane protein complex subunit 1 n=1 Tax=Skel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9148contigS-dermatodea_contig9148:8319..8468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7FJ92
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130
KEGG ModuleM00135
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG2103@1,KOG2103@2759
EC1.2.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.854434-CDS-S-dermatodea_contig9148:8318..84681622925389.854434-CDS-S-dermatodea_contig9148:8318..8468Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9148 8319..8468 -
1694079900.8781514-CDS-S-dermatodea_contig9148:8318..84681694079900.8781514-CDS-S-dermatodea_contig9148:8318..8468Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9148 8319..8468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9148.17221.1prot_S-dermatodea_contig9148.17221.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9148 8319..8468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9148.17221.1

>prot_S-dermatodea_contig9148.17221.1 ID=prot_S-dermatodea_contig9148.17221.1|Name=mRNA_S-dermatodea_contig9148.17221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
QVVSLDRRFLDPRRPLDEPTKTEKEEKLLQYQPFLPVVPTQILSYYKVW*
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mRNA from alignment at S-dermatodea_contig9148:8319..8468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9148.17221.1 ID=mRNA_S-dermatodea_contig9148.17221.1|Name=mRNA_S-dermatodea_contig9148.17221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig9148:8319..8468- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGTTTCTCTGGACCGAAGGTTTTTGGACCCGAGGAGACCCTTGGA
CGAGCCGACCAAGACGGAAAAGGAGGAGAAGCTTCTTCAATACCAGCCTT
TCCTTCCCGTCGTGCCGACGCAAATCCTCTCGTACTACAAGGTATGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9148:8319..8468-

>mRNA_S-dermatodea_contig9148.17221.1 ID=mRNA_S-dermatodea_contig9148.17221.1|Name=mRNA_S-dermatodea_contig9148.17221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig9148:8319..8468- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGTTTCTCTGGACCGAAGGTTTTTGGACCCGAGGAGACCCTTGGA
CGAGCCGACCAAGACGGAAAAGGAGGAGAAGCTTCTTCAATACCAGCCTT
TCCTTCCCGTCGTGCCGACGCAAATCCTCTCGTACTACAAGGTATGGTGA
CAGGTGGTTTCTCTGGACCGAAGGTTTTTGGACCCGAGGAGACCCTTGGA
CGAGCCGACCAAGACGGAAAAGGAGGAGAAGCTTCTTCAATACCAGCCTT
TCCTTCCCGTCGTGCCGACGCAAATCCTCTCGTACTACAAGGTATGGTGA
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