mRNA_S-dermatodea_contig91475.17220.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91475.17220.1
Unique NamemRNA_S-dermatodea_contig91475.17220.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A8F0K280_9PHAE (NADH dehydrogenase subunit 6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K280_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.070e-33
Identity = 69/88 (78.41%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 MKNLTYITIIVSILFFLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRV 264
            M N  + +++V ILFFLSLG+NVV++KNPVYSIFYL+LFFITGSCLIALFGYDYLALIF+LVYVGAIAVLFLFVIMILDIK++NK  +
Sbjct:   10 MVNKVFFSVVVFILFFLSLGVNVVIAKNPVYSIFYLVLFFITGSCLIALFGYDYLALIFILVYVGAIAVLFLFVIMILDIKIVNKPTI 97          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A4Y5T7T4_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7T4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.830e-26
Identity = 62/75 (82.67%), Postives = 71/75 (94.67%), Query Frame = 1
Query:   31 VSILFFLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINK 255
            V I+ FL+LGLNVV+S+NPVYSI YL+LFFITGS L+ALFG+DYLALIFVLVYVGAIAVLFLFVIMILDIK+IN+
Sbjct:    9 VVIVVFLALGLNVVISQNPVYSILYLVLFFITGSSLLALFGFDYLALIFVLVYVGAIAVLFLFVIMILDIKVINQ 83          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: Q2TUA1_DICDH (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUA1_DICDH)

HSP 1 Score: 105 bits (262), Expect = 1.390e-25
Identity = 58/71 (81.69%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   46 FLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKS 258
            FL+LGLNVV+S NPVYSI YL+LFF+TGS ++ALFG+DYL+LIFVLVYVGAIAVLFLFV+MILDIK INKS
Sbjct:   14 FLALGLNVVISHNPVYSILYLVLFFVTGSSILALFGFDYLSLIFVLVYVGAIAVLFLFVVMILDIKTINKS 84          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A3G1PWC9_9STRA (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Entomoneis sp. TaxID=186043 RepID=A0A3G1PWC9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.470e-13
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   25 IIVSILFFLSLGLN-----VVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRVIKQSKNFNLLFYGIGLL 315
            ++++  F LSLG+      VV S NP+YS+ +L++ F+  S L+ + G ++LALIF++VYVGAIAVLFLFV+M+LD+K IN  R  K +  F++  +G  +L
Sbjct:    3 LVLNFYFILSLGIIISSSFVVFSNNPIYSLLWLVVSFLFSSSLLLILGCEFLALIFIVVYVGAIAVLFLFVVMLLDLK-INNLRSKKNNAFFSVAIFGFIVL 103          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A8E8PFG6_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PFG6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.110e-12
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   25 IIVSILFFL--SLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRVIKQSKNFNL 291
            II +I+ FL  SLG+ V+ +KNPVYS  YL+L FI GS +  L G +++ L+F+LVY GAIAVL LFV+M+LD+K+I  +   K+   F L
Sbjct:    5 IIFTIIAFLGGSLGVKVISTKNPVYSGLYLVLLFILGSAISFLLGLEFMGLLFLLVYAGAIAVLVLFVVMMLDVKVIESAWSSKKKTYFYL 95          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A3D2R2F9_9PROT (NADH-quinone oxidoreductase subunit J (Fragment) n=1 Tax=Methylophilaceae bacterium TaxID=2030816 RepID=A0A3D2R2F9_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 4.940e-12
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   43 FFLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLIN----KSRVIKQSKNFNLLFYG 303
            F ++ G+ V+ S+NPV+S+ +LIL F  G+ L+ L G D+ A++F++VYVGAIAVLFLFV+M+L+IKL      K R +       LLF G
Sbjct:   11 FAIASGIMVIQSRNPVHSVLFLILVFFNGAGLLILLGLDFFAMVFLVVYVGAIAVLFLFVVMMLNIKLAEISEKKLRYLPIGGFLGLLFLG 101          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A1I9LW46_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW46_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-11
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   19 ITIIVSILFFLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRVIKQSK 279
            I I++SIL  + LGL V  ++NPVYS  YL+L F  GS +  L G +++AL+F+LVY GAIAVL LFV+M+LD+K I   R  K+ +
Sbjct:    6 IFILISILA-IGLGLKVTSTQNPVYSGLYLVLLFFLGSIIAFLLGLEFIALLFLLVYAGAIAVLVLFVVMMLDVKAIETPRSSKKKR 91          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: Q2TUI4_FUCVE (NADH-ubiquinone oxidoreductase chain 6 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUI4_FUCVE)

HSP 1 Score: 68.6 bits (166), Expect = 1.250e-11
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   52 SLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRVIKQSKNF 285
            SLG+ V+ ++NPVYS  YL+L F  GS +  L G +++AL+F+LVY GAIAVL LFV+M+LD+K I     + Q + F
Sbjct:   16 SLGVKVISTQNPVYSGLYLVLLFFLGSAISFLLGVEFMALLFLLVYAGAIAVLVLFVVMMLDVKAIENPWSVNQKRFF 93          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: A0A1Z4F5P2_9PHAE (NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Chorda TaxID=45033 RepID=A0A1Z4F5P2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-11
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   55 LGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRVIKQSKNFNLL--FYGIGLL 315
            LG+ V  ++NPVYS  YL+L F  GS +  L G +++AL+F+LVY GAIAVL LFV+M+LD+K I K    K+ +   L+  F+  GL+
Sbjct:   17 LGIKVTSTQNPVYSGLYLVLLFFLGSAIAFLLGLEFMALLFLLVYAGAIAVLVLFVVMMLDVKAIEKPWSAKKKRLLYLVGVFFAFGLI 105          
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Match: C1KRF6_MICCC (NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1KRF6_MICCC)

HSP 1 Score: 68.6 bits (166), Expect = 1.320e-11
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   43 FFLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALFGYDYLALIFVLVYVGAIAVLFLFVIMILDIKL--INKS--RVIKQSKNFNLLFYG 303
            F L  G+ V+ +KNPVYS+ +LIL F   S L+ L   D+ A++F++VYVGAIAVLFLFV+M+L++KL  IN S  R +     F LLF+G
Sbjct:   12 FALLAGIMVIRAKNPVYSVLFLILVFCNVSGLLLLINLDFFAMVFLVVYVGAIAVLFLFVVMMLNVKLAEINDSILRYLPVGGVFGLLFFG 102          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91475.17220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K280_9PHAE6.070e-3378.41NADH dehydrogenase subunit 6 n=1 Tax=Protohalopter... [more]
A0A4Y5T7T4_9PHAE3.830e-2682.67NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Dic... [more]
Q2TUA1_DICDH1.390e-2581.69NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Dic... [more]
A0A3G1PWC9_9STRA7.470e-1345.10NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Ent... [more]
A0A8E8PFG6_9PHAE2.110e-1250.55NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Pha... [more]
A0A3D2R2F9_9PROT4.940e-1247.25NADH-quinone oxidoreductase subunit J (Fragment) n... [more]
A0A1I9LW46_9PHAE1.170e-1150.57NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Ple... [more]
Q2TUI4_FUCVE1.250e-1150.00NADH-ubiquinone oxidoreductase chain 6 n=3 Tax=Fuc... [more]
A0A1Z4F5P2_9PHAE1.300e-1147.19NADH-ubiquinone oxidoreductase chain 6 n=2 Tax=Cho... [more]
C1KRF6_MICCC1.320e-1150.55NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Mic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91475contigS-dermatodea_contig91475:273..587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue1e-08
Seed eggNOG ortholog1121948.AUAC01000003_gene2824
Preferred namenuoJ
KEGG rclassRC00061
KEGG koko:K00339
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.Belongs to the complex I subunit 6 family
EggNOG OGs1MWJV@1224,2TRB2@28211,43XQR@69657,COG0839@1,COG0839@2
EC1.6.5.3
COG Functional cat.C
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.820177-CDS-S-dermatodea_contig91475:272..5871622925389.820177-CDS-S-dermatodea_contig91475:272..587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91475 273..587 +
1694079900.8520548-CDS-S-dermatodea_contig91475:272..5871694079900.8520548-CDS-S-dermatodea_contig91475:272..587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91475 273..587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91475.17220.1prot_S-dermatodea_contig91475.17220.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91475 273..587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91475.17220.1

>prot_S-dermatodea_contig91475.17220.1 ID=prot_S-dermatodea_contig91475.17220.1|Name=mRNA_S-dermatodea_contig91475.17220.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MKNLTYITIIVSILFFLSLGLNVVLSKNPVYSIFYLILFFITGSCLIALF
GYDYLALIFVLVYVGAIAVLFLFVIMILDIKLINKSRVIKQSKNFNLLFY
GIGLL
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mRNA from alignment at S-dermatodea_contig91475:273..587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91475.17220.1 ID=mRNA_S-dermatodea_contig91475.17220.1|Name=mRNA_S-dermatodea_contig91475.17220.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at S-dermatodea_contig91475:273..587+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAAATTTAACTTATATTACCATAATTGTTTCTATTTTATTTTTTTT GTCACTAGGATTGAATGTTGTTTTATCTAAAAACCCAGTATACTCTATAT TTTATTTAATACTTTTTTTTATTACCGGATCTTGTCTAATCGCTTTGTTT GGTTACGACTATTTAGCTTTAATTTTTGTTTTAGTTTACGTAGGTGCTAT CGCAGTTCTTTTTTTATTTGTTATAATGATTTTAGATATTAAATTAATCA ATAAATCTAGAGTTATTAAACAATCAAAAAACTTTAATCTTTTATTTTAT GGCATAGGTTTACTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91475:273..587+

>mRNA_S-dermatodea_contig91475.17220.1 ID=mRNA_S-dermatodea_contig91475.17220.1|Name=mRNA_S-dermatodea_contig91475.17220.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig91475:273..587+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAAATTTAACTTATATTACCATAATTGTTTCTATTTTATTTTTTTT
GTCACTAGGATTGAATGTTGTTTTATCTAAAAACCCAGTATACTCTATAT
TTTATTTAATACTTTTTTTTATTACCGGATCTTGTCTAATCGCTTTGTTT
GGTTACGACTATTTAGCTTTAATTTTTGTTTTAGTTTACGTAGGTGCTAT
CGCAGTTCTTTTTTTATTTGTTATAATGATTTTAGATATTAAATTAATCA
ATAAATCTAGAGTTATTAAACAATCAAAAAACTTTAATCTTTTATTTTAT
GGCATAGGTTTACTAATGAAAAATTTAACTTATATTACCATAATTGTTTC
TATTTTATTTTTTTTGTCACTAGGATTGAATGTTGTTTTATCTAAAAACC
CAGTATACTCTATATTTTATTTAATACTTTTTTTTATTACCGGATCTTGT
CTAATCGCTTTGTTTGGTTACGACTATTTAGCTTTAATTTTTGTTTTAGT
TTACGTAGGTGCTATCGCAGTTCTTTTTTTATTTGTTATAATGATTTTAG
ATATTAAATTAATCAATAAATCTAGAGTTATTAAACAATCAAAAAACTTT
AATCTTTTATTTTATGGCATAGGTTTACTA
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