mRNA_S-dermatodea_contig91406.17215.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91406.17215.1
Unique NamemRNA_S-dermatodea_contig91406.17215.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91406.17215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91406contigS-dermatodea_contig91406:96..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size345
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.5218337-CDS-S-dermatodea_contig91406:95..4131622925389.5218337-CDS-S-dermatodea_contig91406:95..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91406 96..413 +
1694079900.6670783-CDS-S-dermatodea_contig91406:95..4131694079900.6670783-CDS-S-dermatodea_contig91406:95..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91406 96..413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.5353317-UTR-S-dermatodea_contig91406:413..4401622925389.5353317-UTR-S-dermatodea_contig91406:413..440Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91406 414..440 +
1694079900.6766675-UTR-S-dermatodea_contig91406:413..4401694079900.6766675-UTR-S-dermatodea_contig91406:413..440Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91406 414..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91406.17215.1prot_S-dermatodea_contig91406.17215.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91406 96..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91406.17215.1

>prot_S-dermatodea_contig91406.17215.1 ID=prot_S-dermatodea_contig91406.17215.1|Name=mRNA_S-dermatodea_contig91406.17215.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
SAAARFAWPLECRLSTAAGLPNRWAGRLAPARFAVPTSAVVLALPHLSRW
TACLGCAVRAGPCRPKIRSSFGLYPAMRSRAAASPLTRRGVLRTSLSGTC
GASRD*
back to top

mRNA from alignment at S-dermatodea_contig91406:96..440+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91406.17215.1 ID=mRNA_S-dermatodea_contig91406.17215.1|Name=mRNA_S-dermatodea_contig91406.17215.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at S-dermatodea_contig91406:96..440+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGCTGCTGCTCGGTTTGCATGGCCCCTTGAGTGTCGGCTATCTACCGC
AGCAGGACTCCCCAATCGGTGGGCGGGGCGGCTTGCGCCGGCCCGGTTTG
CTGTACCGACATCGGCGGTGGTGCTTGCGCTGCCCCACCTGAGCCGCTGG
ACTGCGTGCCTGGGGTGTGCTGTTCGCGCTGGTCCATGTCGTCCAAAAAT
TCGATCAAGCTTCGGTCTGTACCCCGCTATGCGCAGCCGTGCTGCAGCCA
GCCCGTTGACCCGTCGAGGTGTCTTGCGAACTTCTCTCTCAGGGACGTGC
GGTGCTTCGAGGGACTGAACGCGTGGGGCTTGTACTGCTCCTATC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig91406:96..440+

>mRNA_S-dermatodea_contig91406.17215.1 ID=mRNA_S-dermatodea_contig91406.17215.1|Name=mRNA_S-dermatodea_contig91406.17215.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig91406:96..440+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGCTGCTGCTCGGTTTGCATGGCCCCTTGAGTGTCGGCTATCTACCGC
AGCAGGACTCCCCAATCGGTGGGCGGGGCGGCTTGCGCCGGCCCGGTTTG
CTGTACCGACATCGGCGGTGGTGCTTGCGCTGCCCCACCTGAGCCGCTGG
ACTGCGTGCCTGGGGTGTGCTGTTCGCGCTGGTCCATGTCGTCCAAAAAT
TCGATCAAGCTTCGGTCTGTACCCCGCTATGCGCAGCCGTGCTGCAGCCA
GCCCGTTGACCCGTCGAGGTGTCTTGCGAACTTCTCTCTCAGGGACGTGC
GGTGCTTCGAGGGACTGATCCGCTGCTGCTCGGTTTGCATGGCCCCTTGA
GTGTCGGCTATCTACCGCAGCAGGACTCCCCAATCGGTGGGCGGGGCGGC
TTGCGCCGGCCCGGTTTGCTGTACCGACATCGGCGGTGGTGCTTGCGCTG
CCCCACCTGAGCCGCTGGACTGCGTGCCTGGGGTGTGCTGTTCGCGCTGG
TCCATGTCGTCCAAAAATTCGATCAAGCTTCGGTCTGTACCCCGCTATGC
GCAGCCGTGCTGCAGCCAGCCCGTTGACCCGTCGAGGTGTCTTGCGAACT
TCTCTCTCAGGGACGTGCGGTGCTTCGAGGGACTGA
back to top