mRNA_S-dermatodea_contig91380.17211.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91380.17211.1
Unique NamemRNA_S-dermatodea_contig91380.17211.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.380e-31
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:   16 GQPGEGKRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            G  GEGKRARWISEGGALD+VL+PGPT   VF+QYAEVTGKPELPP+FSLGFHQCRWNYRDEQ
Sbjct:  406 GGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 468
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A7S2PTL2_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PTL2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.310e-21
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 DMTLAGQPGEGKRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDE 201
            D++   Q GEG    WISE G  D+ L+PGP+ RD++ QYA +TG+ E+PP+F+LG+HQCRWNYRDE
Sbjct:  366 DVSNYKQGGEGLSTHWISESGVFDLFLLPGPSPRDLYAQYAVLTGRLEMPPMFALGYHQCRWNYRDE 432
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A7S3PSF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSF0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.760e-21
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   31 GKRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            GK  +W+SE G  D+ + PGPT    F QYAEVTG   LPP+FSL +HQCRWNYRDE+
Sbjct:   43 GKSTKWMSESGVFDLFIFPGPTPLATFSQYAEVTGTTPLPPMFSLAYHQCRWNYRDEK 100
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A7S4AL75_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AL75_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.930e-20
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   34 KRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            K A W+SE G +DV  +PGPT +D +RQYA++TG   LPP+FSLG+HQCRWNY+DEQ
Sbjct:  480 KTAHWMSESGIIDVFFIPGPTPKDFYRQYAKLTGFTPLPPIFSLGYHQCRWNYKDEQ 536
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A669PRU9_PHACC (Gal_mutarotas_2 domain-containing protein n=3 Tax=Phasianinae TaxID=9072 RepID=A0A669PRU9_PHACC)

HSP 1 Score: 92.0 bits (227), Expect = 3.980e-20
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   43 RWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            RW+SE G +DV L+ GPTA D+FRQ+A++TG   LPPLFSLG+HQCRWNY DEQ
Sbjct:  238 RWMSESGIIDVFLLMGPTAFDIFRQFAQLTGTQALPPLFSLGYHQCRWNYEDEQ 291
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A1E7FR44_9STRA (Glucosidase II alpha subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR44_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.980e-20
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   34 KRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            K + W+SE G +DV  +PGPT +D +RQYA++TG   LPP+FSLG+HQCRWNY+DEQ
Sbjct:  172 KTSHWMSESGIIDVFFIPGPTPKDFYRQYAKLTGTTPLPPIFSLGYHQCRWNYKDEQ 228
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A669PRU5_PHACC (Gal_mutarotas_2 domain-containing protein n=1 Tax=Phasianus colchicus TaxID=9054 RepID=A0A669PRU5_PHACC)

HSP 1 Score: 92.0 bits (227), Expect = 3.980e-20
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   43 RWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            RW+SE G +DV L+ GPTA D+FRQ+A++TG   LPPLFSLG+HQCRWNY DEQ
Sbjct:  262 RWMSESGIIDVFLLMGPTAFDIFRQFAQLTGTQALPPLFSLGYHQCRWNYEDEQ 315
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BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A669PJE7_PHACC (Gal_mutarotas_2 domain-containing protein n=1 Tax=Phasianus colchicus TaxID=9054 RepID=A0A669PJE7_PHACC)

HSP 1 Score: 92.0 bits (227), Expect = 3.990e-20
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   43 RWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            RW+SE G +DV L+ GPTA D+FRQ+A++TG   LPPLFSLG+HQCRWNY DEQ
Sbjct:  278 RWMSESGIIDVFLLMGPTAFDIFRQFAQLTGTQALPPLFSLGYHQCRWNYEDEQ 331
[Close]
BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A2R5GQN0_9STRA (Neutral alpha-glucosidase AB n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQN0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.000e-20
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   34 KRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDEQ 204
            K+  WISE G +DV++M GPT  DVF+QYA +TG   +PPLFSLG+HQCRWNYRDE+
Sbjct:  381 KQVHWISESGVVDVMVMAGPTPVDVFQQYASLTGTTPIPPLFSLGYHQCRWNYRDEK 437
[Close]
BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Match: A0A7S0LRM7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRM7_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 4.000e-20
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 DMTLAGQPGEGKRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPPLFSLGFHQCRWNYRDE 201
            D++ +G P     A W+SE G +DV+++PGP   DVF QYA +TG   LPPLFSLG+HQCRWNY DE
Sbjct:  368 DISRSGGPPASTSAYWMSESGVVDVMMLPGPRPADVFAQYASLTGVTPLPPLFSLGYHQCRWNYNDE 434
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91380.17211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLR8_9PHAE5.380e-3185.71Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A7S2PTL2_9STRA3.310e-2156.72Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S3PSF0_9STRA5.760e-2160.34Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S4AL75_9STRA2.930e-2063.16Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A669PRU9_PHACC3.980e-2068.52Gal_mutarotas_2 domain-containing protein n=3 Tax=... [more]
A0A1E7FR44_9STRA3.980e-2061.40Glucosidase II alpha subunit n=1 Tax=Fragilariopsi... [more]
A0A669PRU5_PHACC3.980e-2068.52Gal_mutarotas_2 domain-containing protein n=1 Tax=... [more]
A0A669PJE7_PHACC3.990e-2068.52Gal_mutarotas_2 domain-containing protein n=1 Tax=... [more]
A0A2R5GQN0_9STRA4.000e-2064.91Neutral alpha-glucosidase AB n=1 Tax=Hondaea ferme... [more]
A0A7S0LRM7_9EUKA4.000e-2056.72Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91380contigS-dermatodea_contig91380:208..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score91.3
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog52644.XP_010578350.1
Preferred nameGANC
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K05546,ko:K12317
KEGG ReactionR00028,R00801,R00802,R05980,R05981
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004558,GO:0005975,GO:0005996,GO:0006006,GO:0008150,GO:0008152,GO:0015926,GO:0016787,GO:0016798,GO:0019318,GO:0044238,GO:0044281,GO:0071704,GO:0090599
EggNOG free text desc.Belongs to the glycosyl hydrolase 31 family
EggNOG OGs3AJSB@33154,3BDJ3@33208,3CRKP@33213,4800W@7711,490EW@7742,4GPVZ@8782,COG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
COG Functional cat.GMO
CAZyGH31
Best tax levelAves
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size207
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.1577077-UTR-S-dermatodea_contig91380:207..2101622925389.1577077-UTR-S-dermatodea_contig91380:207..210Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91380 208..210 +
1694079900.4142702-UTR-S-dermatodea_contig91380:207..2101694079900.4142702-UTR-S-dermatodea_contig91380:207..210Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91380 208..210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.1688197-CDS-S-dermatodea_contig91380:210..4171622925389.1688197-CDS-S-dermatodea_contig91380:210..417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91380 211..417 +
1694079900.4285502-CDS-S-dermatodea_contig91380:210..4171694079900.4285502-CDS-S-dermatodea_contig91380:210..417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91380 211..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91380.17211.1prot_S-dermatodea_contig91380.17211.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91380 211..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91380.17211.1

>prot_S-dermatodea_contig91380.17211.1 ID=prot_S-dermatodea_contig91380.17211.1|Name=mRNA_S-dermatodea_contig91380.17211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
MTLAGQPGEGKRARWISEGGALDVVLMPGPTARDVFRQYAEVTGKPELPP
LFSLGFHQCRWNYRDEQV*
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mRNA from alignment at S-dermatodea_contig91380:208..417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91380.17211.1 ID=mRNA_S-dermatodea_contig91380.17211.1|Name=mRNA_S-dermatodea_contig91380.17211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig91380:208..417+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACATGACACTTGCAGGCCAGCCCGGCGAGGGCAAGCGCGCGAGGTGGAT
CAGCGAGGGCGGCGCCTTGGACGTCGTGCTCATGCCGGGCCCCACTGCTC
GCGACGTATTCCGTCAGTACGCAGAGGTCACCGGGAAACCGGAGCTGCCG
CCGCTCTTTAGCTTGGGGTTCCACCAATGCCGCTGGAACTACCGAGACGA
GCAGGTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91380:208..417+

>mRNA_S-dermatodea_contig91380.17211.1 ID=mRNA_S-dermatodea_contig91380.17211.1|Name=mRNA_S-dermatodea_contig91380.17211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig91380:208..417+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACACTTGCAGGCCAGCCCGGCGAGGGCAAGCGCGCGAGGTGGATCAG
CGAGGGCGGCGCCTTGGACGTCGTGCTCATGCCGGGCCCCACTGCTCGCG
ACGTATTCCGTCAGTACGCAGAGGTCACCGGGAAACCGGAGCTGCCGCCG
CTCTTTAGCTTGGGGTTCCACCAATGCCGCTGGAACTACCGAGACGAGCA
GGTTTGAATGACACTTGCAGGCCAGCCCGGCGAGGGCAAGCGCGCGAGGT
GGATCAGCGAGGGCGGCGCCTTGGACGTCGTGCTCATGCCGGGCCCCACT
GCTCGCGACGTATTCCGTCAGTACGCAGAGGTCACCGGGAAACCGGAGCT
GCCGCCGCTCTTTAGCTTGGGGTTCCACCAATGCCGCTGGAACTACCGAG
ACGAGCAGGTTTGA
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