mRNA_S-dermatodea_contig9134.17210.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9134.17210.1
Unique NamemRNA_S-dermatodea_contig9134.17210.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9134.17210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9134contigS-dermatodea_contig9134:2559..2979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.107778-CDS-S-dermatodea_contig9134:2558..28731622925389.107778-CDS-S-dermatodea_contig9134:2558..2873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9134 2559..2873 +
1694079900.3833282-CDS-S-dermatodea_contig9134:2558..28731694079900.3833282-CDS-S-dermatodea_contig9134:2558..2873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9134 2559..2873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.12298-UTR-S-dermatodea_contig9134:2873..29791622925389.12298-UTR-S-dermatodea_contig9134:2873..2979Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9134 2874..2979 +
1694079900.395697-UTR-S-dermatodea_contig9134:2873..29791694079900.395697-UTR-S-dermatodea_contig9134:2873..2979Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9134 2874..2979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9134.17210.1prot_S-dermatodea_contig9134.17210.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9134 2559..2873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9134.17210.1

>prot_S-dermatodea_contig9134.17210.1 ID=prot_S-dermatodea_contig9134.17210.1|Name=mRNA_S-dermatodea_contig9134.17210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
VSPLAGDDGTSARTPSAPLDVRYLPRNRLERTVPRNSLAHTPAAAFFCDR
FGKQRVHTGGPVFGLLVIVVPKQQTADVTDFLLFWLLTYIFAWRSTPCCW
VACS*
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mRNA from alignment at S-dermatodea_contig9134:2559..2979+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9134.17210.1 ID=mRNA_S-dermatodea_contig9134.17210.1|Name=mRNA_S-dermatodea_contig9134.17210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=421bp|location=Sequence derived from alignment at S-dermatodea_contig9134:2559..2979+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTCGCCATTGGCGGGCGACGACGGCACGTCGGCACGCACTCCCTCCGC
ACCGCTCGACGTACGGTATCTCCCCAGAAATCGACTTGAGCGGACCGTGC
CCCGTAACTCCTTGGCACACACTCCCGCGGCGGCTTTCTTCTGCGATAGG
TTCGGCAAGCAAAGAGTGCACACAGGCGGTCCGGTGTTTGGCTTGCTGGT
GATTGTTGTTCCCAAACAGCAAACCGCAGACGTCACCGATTTTCTCTTGT
TTTGGCTGCTCACGTATATTTTTGCTTGGCGCTCAACTCCCTGCTGCTGG
GTGGCGTGCAGCTAACATGGATGGTATGGGGAGGTCATCGGTGCCACCGT
CCGCAGCCGCGTCGCCTGCACCACGGATCCTGCTACGTGCCTGCGTACTC
TGCCTATGCTCCACATGGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9134:2559..2979+

>mRNA_S-dermatodea_contig9134.17210.1 ID=mRNA_S-dermatodea_contig9134.17210.1|Name=mRNA_S-dermatodea_contig9134.17210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig9134:2559..2979+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTCGCCATTGGCGGGCGACGACGGCACGTCGGCACGCACTCCCTCCGC
ACCGCTCGACGTACGGTATCTCCCCAGAAATCGACTTGAGCGGACCGTGC
CCCGTAACTCCTTGGCACACACTCCCGCGGCGGCTTTCTTCTGCGATAGG
TTCGGCAAGCAAAGAGTGCACACAGGCGGTCCGGTGTTTGGCTTGCTGGT
GATTGTTGTTCCCAAACAGCAAACCGCAGACGTCACCGATTTTCTCTTGT
TTTGGCTGCTCACGTATATTTTTGCTTGGCGCTCAACTCCCTGCTGCTGG
GTGGCGTGCAGCTAAGTTTCGCCATTGGCGGGCGACGACGGCACGTCGGC
ACGCACTCCCTCCGCACCGCTCGACGTACGGTATCTCCCCAGAAATCGAC
TTGAGCGGACCGTGCCCCGTAACTCCTTGGCACACACTCCCGCGGCGGCT
TTCTTCTGCGATAGGTTCGGCAAGCAAAGAGTGCACACAGGCGGTCCGGT
GTTTGGCTTGCTGGTGATTGTTGTTCCCAAACAGCAAACCGCAGACGTCA
CCGATTTTCTCTTGTTTTGGCTGCTCACGTATATTTTTGCTTGGCGCTCA
ACTCCCTGCTGCTGGGTGGCGTGCAGCTAA
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