mRNA_S-dermatodea_contig91336.17209.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91336.17209.1
Unique NamemRNA_S-dermatodea_contig91336.17209.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 6.040e-34
Identity = 83/163 (50.92%), Postives = 90/163 (55.21%), Query Frame = 1
Query:   46 LPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            LPLSQRLKIGEAVLLSARRCG+AMPKYA  +VNAFV AARERSS                         G      A V                              ++ S +  LESKERYHFRASCLSNLAEVCQLLRWSLGRFS D+VDL  G+LS E
Sbjct: 1239 LPLSQRLKIGEAVLLSARRCGDAMPKYAHLFVNAFVVAARERSSDGNXXXXXXXXXXXXXXXXXPGGDAGSASLGSAAVNXXXXXXXXXXXXXXXXX------XAAQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTE 1395          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.480e-30
Identity = 84/176 (47.73%), Postives = 89/176 (50.57%), Query Frame = 1
Query:    7 GSATTAAALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            GSA    A A   LPLSQRLKIGEAVLLSARRCG+AMPK+A  +VNAFV AARERSS   G                                  S                                  LESKER HFRASCLSNLAEVCQLLRWSLGRFS D+VDL  G+LS E
Sbjct: 1208 GSAPGVDAAAATPLPLSQRLKIGEAVLLSARRCGDAMPKHAHLFVNAFVVAARERSSD--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS---------------------------------LESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTE 1348          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.500e-22
Identity = 64/163 (39.26%), Postives = 82/163 (50.31%), Query Frame = 1
Query:   46 LPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            L L+QRLK+GEAV+ +ARRCGEA PKYA+ +V AFV AARER                          VGG                                          ++G +E++ER HFRASCLSNLAEVC LLRWSL  +++D+VDL +G L++E
Sbjct:  912 LTLAQRLKVGEAVMFAARRCGEAAPKYAQHFVGAFVVAARER--------------------------VGG------------------------------------------DSGSVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLE 1006          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A5D6Y2F3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.890e-13
Identity = 61/170 (35.88%), Postives = 89/170 (52.35%), Query Frame = 1
Query:   25 AALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            AAL   S PL++R+K+ EA+L SA+RCGE +P +A+ +V A++   R        P +    +V A +      ++GG        +   +RE E +G+ A  VG         PG + S+  L E+      RASCLSNLAEVC LL+W L  F  D++    GIL +E
Sbjct:  832 AALRDRSEPLARRIKLSEALLFSAKRCGETLPVHAKTFVFAYLDCIR--------PPAAASARVGASKRFQLIQEIGG--------EREGERE-EGDGRVAAAVG---------PGSDGSDP-LAEAT----LRASCLSNLAEVCVLLQWGLQPFVADVMTCVFGILQLE 970          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A3F2RMA9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMA9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.480e-13
Identity = 58/169 (34.32%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   28 ALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            AL+  S  L  R+K+ EA+L SA+RCGE +PK+A+ +V A++   R             PP    K  E   A+   R Q    V+   + +   E         E +  G      ESE  LL +      RASCLSNLAEVC LL+W L  F  D++    G+L +E
Sbjct:  552 ALSDSSSTLETRIKLSEALLFSAKRCGETLPKFAKLFVYAYLDCIR-------------PPPSKRKHVERIQAEASRRVQLIQEVRGTEELDAHAE--------AENSEDG-----HESEEELLAAAT---LRASCLSNLAEVCALLQWGLQPFLLDVLTCVFGVLQVE 691          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 3.530e-13
Identity = 48/160 (30.00%), Postives = 73/160 (45.62%), Query Frame = 1
Query:   55 SQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            +QR+K+GEA++ +AR+CG ++ KY+++++ AF+  AR RS+                                           +VE                            +  +  +FR+SCLSNLAEVC LL+WSL R++QDI DL +GIL ME
Sbjct:   80 AQRVKVGEALMCAARKCGASISKYSQYFMRAFILGARMRSA-------------------------------------------DVE----------------------------DDSDWVNFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQME 168          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: G4ZD77_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZD77_PHYSP)

HSP 1 Score: 76.6 bits (187), Expect = 4.720e-13
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   28 ALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            AL   S  L  R+K+ EA+L SA+RCGE +PKY + +V A++   R             PP    K  E    +   R Q    V++ + + +E                   P   E E+G  E       RASCLSNLAEVC LL+W L  F  D++    G+L ME
Sbjct:  746 ALLDSSNSLESRIKLSEALLFSAKRCGETLPKYGKLFVYAYLDCIR-------------PPPSQRKRVERMQQETSKRIQLIQEVENPATKTQEA----------------AQPA-NEPESGEQELLAAATLRASCLSNLAEVCALLQWGLQPFLLDVMTCVFGVLQME 884          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A8K1C9E9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9E9_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 2.210e-12
Identity = 52/168 (30.95%), Postives = 78/168 (46.43%), Query Frame = 1
Query:   31 LAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            L   ++ L +R+K+GEA+L +A+RCGE +PKYA+ +V A++   R   S    P          K++     ++    + DAP Q                              + S   L+E+      RASCLSNLAEVC LL W+L  F+ D++    GIL +E
Sbjct:  828 LRDTTVSLEKRIKLGEALLFTAKRCGEMLPKYAKVFVYAYLDCIRPPQSRNAKP----------KKSFQLIQEIDPNEKKDAPAQD----------------------------NDASAVALVEAT----LRASCLSNLAEVCALLGWALAPFAVDVLTCVFGILQLE 953          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: H3GK10_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GK10_PHYRM)

HSP 1 Score: 73.9 bits (180), Expect = 4.060e-12
Identity = 59/170 (34.71%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   28 ALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGRE-ESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            AL   +  L  R+K+ EA+L SA+RCGE +PK+A+ +V A++   R   S R         +++ KE  S   Q+         +Q  S  E E   K    +          P  E ESE  LL +      RASCLSNLAEVC LL+W L  F  D++    G+L +E
Sbjct:  745 ALRDPNTSLESRIKLSEALLFSAKRCGETLPKFAKLFVYAYLDCIRPLPSKRQHV------ELIQKEA-SRRVQL---------IQEVSSAEEEAAAKAESEL----------PDNEPESEAELLAAAT---LRASCLSNLAEVCALLQWGLQPFLLDVLTCVFGVLQLE 885          
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: D0MTC1_PHYIT (RTP1_C1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTC1_PHYIT)

HSP 1 Score: 73.6 bits (179), Expect = 5.510e-12
Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 1
Query:   52 LSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
            +  R+K+ EA+L SA+RCGE +P+Y + +V A++   R             PP    K  E    +V  R Q    +Q   D E +               T     ++E EN   E       RASCLSNLAEVC LL+W L  F +D++    G+L +E
Sbjct:  755 MESRIKLSEALLFSAKRCGETLPQYGKLFVYAYLDCIR-------------PPPSQKKRVERIHKEVTKRVQ---LIQEIQDDEEQA--------------TALDESQDEPEN-EQELLAAATLRASCLSNLAEVCALLQWGLQPFLRDVLTCVFGVLQLE 884          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHX3_ECTSI6.040e-3450.92RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPL2_9PHAE3.480e-3047.73RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA1.500e-2239.26RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5D6Y2F3_9STRA1.890e-1335.88Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3F2RMA9_9STRA2.480e-1334.32Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A7S3YE87_HETAK3.530e-1330.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
G4ZD77_PHYSP4.720e-1333.14Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A8K1C9E9_PYTOL2.210e-1230.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GK10_PHYRM4.060e-1234.71Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0MTC1_PHYIT5.510e-1232.30RTP1_C1 domain-containing protein n=2 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91336contigS-dermatodea_contig91336:3..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue3.2e-31
Seed eggNOG ortholog2880.D7FHX3
Preferred nameTANGO6
KEGG rclassRC00961
KEGG koko:K01763,ko:K08489
KEGG ReactionR03599
KEGG Pathwayko00450,ko01100,ko04130,map00450,map01100,map04130
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0032940,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
EggNOG free text desc.protein transport
EggNOG OGsKOG4653@1,KOG4653@2759
EC4.4.1.16
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925389.071158-CDS-S-dermatodea_contig91336:2..5361622925389.071158-CDS-S-dermatodea_contig91336:2..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91336 3..536 +
1694079900.367844-CDS-S-dermatodea_contig91336:2..5361694079900.367844-CDS-S-dermatodea_contig91336:2..536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91336 3..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91336.17209.1prot_S-dermatodea_contig91336.17209.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91336 3..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91336.17209.1

>prot_S-dermatodea_contig91336.17209.1 ID=prot_S-dermatodea_contig91336.17209.1|Name=mRNA_S-dermatodea_contig91336.17209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=178bp
PSGSATTAAALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAF
VTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDR
EREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLA
EVCQLLRWSLGRFSQDIVDLGVGILSME
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mRNA from alignment at S-dermatodea_contig91336:3..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91336.17209.1 ID=mRNA_S-dermatodea_contig91336.17209.1|Name=mRNA_S-dermatodea_contig91336.17209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig91336:3..536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTCTGGAAGCGCGACAACAGCAGCGGCGTTGGCGGGGGTCTCTTTACC CCTGTCCCAGCGCCTGAAGATCGGAGAGGCCGTGCTTCTCTCGGCTCGGC GGTGCGGGGAAGCCATGCCCAAGTACGCGCGCTTTTACGTCAACGCATTC GTCACCGCCGCGCGGGAACGATCATCCGGGAGAACCGGGCCTGGGAGTTG TGTGCCCCCCAAAGTCCTTGCAAAAGAGACGGAGTCCGCGTCCGCACAGG TTGGTGGTCGTGGGCAACCGGATGCTCCCGTGCAGCACGCGAGCGATAGA GAACGGGAAGTCGAGGGAAAGGGCGCACGTGGGGTGGGCGGCGAGGGGAA CAGGACGGGTTGCGGACCGGGGCGGGAAGAGTCCGAGAATGGCTTGTTGG AGAGCAAGGAGCGGTACCACTTCCGTGCCAGTTGCTTGTCAAACCTCGCC GAGGTGTGCCAGCTTCTGCGGTGGTCTCTCGGCCGGTTCTCGCAGGACAT CGTGGACCTTGGCGTCGGAATTTTATCCATGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig91336:3..536+

>mRNA_S-dermatodea_contig91336.17209.1 ID=mRNA_S-dermatodea_contig91336.17209.1|Name=mRNA_S-dermatodea_contig91336.17209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig91336:3..536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTCTGGAAGCGCGACAACAGCAGCGGCGTTGGCGGGGGTCTCTTTACC
CCTGTCCCAGCGCCTGAAGATCGGAGAGGCCGTGCTTCTCTCGGCTCGGC
GGTGCGGGGAAGCCATGCCCAAGTACGCGCGCTTTTACGTCAACGCATTC
GTCACCGCCGCGCGGGAACGATCATCCGGGAGAACCGGGCCTGGGAGTTG
TGTGCCCCCCAAAGTCCTTGCAAAAGAGACGGAGTCCGCGTCCGCACAGG
TTGGTGGTCGTGGGCAACCGGATGCTCCCGTGCAGCACGCGAGCGATAGA
GAACGGGAAGTCGAGGGAAAGGGCGCACGTGGGGTGGGCGGCGAGGGGAA
CAGGACGGGTTGCGGACCGGGGCGGGAAGAGTCCGAGAATGGCTTGTTGG
AGAGCAAGGAGCGGTACCACTTCCGTGCCAGTTGCTTGTCAAACCTCGCC
GAGGTGTGCCAGCTTCTGCGGTGGTCTCTCGGCCGGTTCTCGCAGGACAT
CGTGGACCTTGGCGTCGGAATTTTATCCATGGAGCCGTCTGGAAGCGCGA
CAACAGCAGCGGCGTTGGCGGGGGTCTCTTTACCCCTGTCCCAGCGCCTG
AAGATCGGAGAGGCCGTGCTTCTCTCGGCTCGGCGGTGCGGGGAAGCCAT
GCCCAAGTACGCGCGCTTTTACGTCAACGCATTCGTCACCGCCGCGCGGG
AACGATCATCCGGGAGAACCGGGCCTGGGAGTTGTGTGCCCCCCAAAGTC
CTTGCAAAAGAGACGGAGTCCGCGTCCGCACAGGTTGGTGGTCGTGGGCA
ACCGGATGCTCCCGTGCAGCACGCGAGCGATAGAGAACGGGAAGTCGAGG
GAAAGGGCGCACGTGGGGTGGGCGGCGAGGGGAACAGGACGGGTTGCGGA
CCGGGGCGGGAAGAGTCCGAGAATGGCTTGTTGGAGAGCAAGGAGCGGTA
CCACTTCCGTGCCAGTTGCTTGTCAAACCTCGCCGAGGTGTGCCAGCTTC
TGCGGTGGTCTCTCGGCCGGTTCTCGCAGGACATCGTGGACCTTGGCGTC
GGAATTTTATCCATGGAG
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