mRNA_S-dermatodea_contig91286.17204.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91286.17204.1
Unique NamemRNA_S-dermatodea_contig91286.17204.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-13
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGEE 123
            IAPEIVRGD YDERCD+YSFAVVLLAML+L+DDV+ +F EE
Sbjct: 1135 IAPEIVRGDCYDERCDIYSFAVVLLAMLQLKDDVVTVFAEE 1175
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-13
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGEE 123
            IAPEIVRGD YDERCD+YSFAVVLLAML+L+DDV+ +F EE
Sbjct: 1066 IAPEIVRGDCYDERCDIYSFAVVLLAMLQLKDDVVTVFAEE 1106
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: W7U3S3_9STRA (Protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3S3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.860e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGE 120
            +APE+VRG+RY E+CDVYSFAVVLLAMLELR DVL +F E
Sbjct:  128 VAPEVVRGERYSEKCDVYSFAVVLLAMLELRPDVLDVFAE 167
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: K8YUM3_NANGC (Deah (Asp-glu-ala-his) box polypeptide 36 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUM3_NANGC)

HSP 1 Score: 67.4 bits (163), Expect = 5.460e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGE 120
            +APE+VRG+RY E+CDVYSFAVVLLAMLELR DVL +F E
Sbjct:  758 VAPEVVRGERYSEKCDVYSFAVVLLAMLELRPDVLDVFAE 797
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: A0A4D9DAM1_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.480e-12
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGE 120
            +APE+VRG+RY E+CDVYSFAVVLLAMLELR DVL +F E
Sbjct:  760 VAPEVVRGERYSEKCDVYSFAVVLLAMLELRPDVLDVFAE 799
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: A0A835ZFS3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.050e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLF 114
            IAPEIVRGD+YDE+CDVYSFAVVLL ML+LR+ V  LF
Sbjct:  175 IAPEIVRGDKYDEKCDVYSFAVVLLGMLQLREHVFDLF 212
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BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Match: A0A6V1QL76_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QL76_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 2.310e-10
Identity = 26/42 (61.90%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGEEV 126
            IAPE+VRGDRYDE+CDVYSFA+V+LA L+L+ +++ +F E +
Sbjct:  249 IAPEVVRGDRYDEKCDVYSFAIVMLAALQLKPNIVDVFAETI 290
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91286.17204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JK37_9PHAE1.290e-1380.49Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN78_ECTSI1.290e-1380.49Tyrosine kinase specific for activated (GTP-bound)... [more]
W7U3S3_9STRA4.860e-1277.50Protein kinase n=1 Tax=Nannochloropsis gaditana Ta... [more]
K8YUM3_NANGC5.460e-1277.50Deah (Asp-glu-ala-his) box polypeptide 36 n=1 Tax=... [more]
A0A4D9DAM1_9STRA5.480e-1277.50Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A835ZFS3_9STRA5.050e-1178.95Kinase-like domain-containing protein (Fragment) n... [more]
A0A6V1QL76_HETAK2.310e-1061.90Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91286contigS-dermatodea_contig91286:361..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue9.7e-11
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.780115-CDS-S-dermatodea_contig91286:360..4861622925388.780115-CDS-S-dermatodea_contig91286:360..486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91286 361..486 +
1694079900.246742-CDS-S-dermatodea_contig91286:360..4861694079900.246742-CDS-S-dermatodea_contig91286:360..486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91286 361..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91286.17204.1prot_S-dermatodea_contig91286.17204.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91286 361..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91286.17204.1

>prot_S-dermatodea_contig91286.17204.1 ID=prot_S-dermatodea_contig91286.17204.1|Name=mRNA_S-dermatodea_contig91286.17204.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=42bp
IAPEIVRGDRYDERCDVYSFAVVLLAMLELRDDVLVLFGEEV
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mRNA from alignment at S-dermatodea_contig91286:361..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91286.17204.1 ID=mRNA_S-dermatodea_contig91286.17204.1|Name=mRNA_S-dermatodea_contig91286.17204.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at S-dermatodea_contig91286:361..486+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCGCCGGAGATCGTTCGAGGGGACCGCTACGACGAGCGCTGCGACGT
GTACAGCTTTGCCGTCGTGCTGCTTGCCATGCTCGAGCTGAGGGATGACG
TTCTTGTGCTGTTCGGGGAGGAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91286:361..486+

>mRNA_S-dermatodea_contig91286.17204.1 ID=mRNA_S-dermatodea_contig91286.17204.1|Name=mRNA_S-dermatodea_contig91286.17204.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig91286:361..486+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCGCCGGAGATCGTTCGAGGGGACCGCTACGACGAGCGCTGCGACGT
GTACAGCTTTGCCGTCGTGCTGCTTGCCATGCTCGAGCTGAGGGATGACG
TTCTTGTGCTGTTCGGGGAGGAGGTAATCGCGCCGGAGATCGTTCGAGGG
GACCGCTACGACGAGCGCTGCGACGTGTACAGCTTTGCCGTCGTGCTGCT
TGCCATGCTCGAGCTGAGGGATGACGTTCTTGTGCTGTTCGGGGAGGAGG
TA
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