mRNA_S-dermatodea_contig9123.17201.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9123.17201.1
Unique NamemRNA_S-dermatodea_contig9123.17201.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9123.17201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9123contigS-dermatodea_contig9123:365..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.5817595-UTR-S-dermatodea_contig9123:364..4411622925388.5817595-UTR-S-dermatodea_contig9123:364..441Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9123 365..441 +
1694079900.0994773-UTR-S-dermatodea_contig9123:364..4411694079900.0994773-UTR-S-dermatodea_contig9123:364..441Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9123 365..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.594869-CDS-S-dermatodea_contig9123:441..7561622925388.594869-CDS-S-dermatodea_contig9123:441..756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9123 442..756 +
1694079900.1093237-CDS-S-dermatodea_contig9123:441..7561694079900.1093237-CDS-S-dermatodea_contig9123:441..756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9123 442..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9123.17201.1prot_S-dermatodea_contig9123.17201.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9123 442..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9123.17201.1

>prot_S-dermatodea_contig9123.17201.1 ID=prot_S-dermatodea_contig9123.17201.1|Name=mRNA_S-dermatodea_contig9123.17201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MRHPIHFVDGGIHIFVSSLPSSCNVVLVARDNPKGRCGGGGTTDVKRILY
PGVDHGPNNAGKERYAGFSPARLRFAVVILAFAIPNDMPWVHRIYLRVGR
GGGGG
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mRNA from alignment at S-dermatodea_contig9123:365..756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9123.17201.1 ID=mRNA_S-dermatodea_contig9123.17201.1|Name=mRNA_S-dermatodea_contig9123.17201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=392bp|location=Sequence derived from alignment at S-dermatodea_contig9123:365..756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATCATCGACCTAGGCCTGGGGGACAGGGGCCTGCCGAAACACAGCTGA
CATCGATTATCATAGCGGCAGGAATGCATGAGGCATCCTATACACTTTGT
GGACGGGGGCATTCATATATTTGTATCTTCTCTTCCATCTTCGTGTAATG
TAGTCCTCGTCGCGCGAGACAATCCCAAGGGGAGGTGTGGGGGGGGGGGT
ACTACTGATGTTAAACGCATATTGTATCCAGGCGTAGACCACGGTCCCAA
CAATGCCGGGAAGGAGCGATATGCCGGGTTTTCGCCGGCCAGGCTGCGTT
TCGCTGTCGTCATCCTTGCGTTTGCGATACCAAACGATATGCCATGGGTT
CATCGGATATACCTTAGGGTGGGGAGGGGGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9123:365..756+

>mRNA_S-dermatodea_contig9123.17201.1 ID=mRNA_S-dermatodea_contig9123.17201.1|Name=mRNA_S-dermatodea_contig9123.17201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig9123:365..756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGCATCCTATACACTTTGTGGACGGGGGCATTCATATATTTGTATC
TTCTCTTCCATCTTCGTGTAATGTAGTCCTCGTCGCGCGAGACAATCCCA
AGGGGAGGTGTGGGGGGGGGGGTACTACTGATGTTAAACGCATATTGTAT
CCAGGCGTAGACCACGGTCCCAACAATGCCGGGAAGGAGCGATATGCCGG
GTTTTCGCCGGCCAGGCTGCGTTTCGCTGTCGTCATCCTTGCGTTTGCGA
TACCAAACGATATGCCATGGGTTCATCGGATATACCTTAGGGTGGGGAGG
GGGGGGGGGGGGGGGATGAGGCATCCTATACACTTTGTGGACGGGGGCAT
TCATATATTTGTATCTTCTCTTCCATCTTCGTGTAATGTAGTCCTCGTCG
CGCGAGACAATCCCAAGGGGAGGTGTGGGGGGGGGGGTACTACTGATGTT
AAACGCATATTGTATCCAGGCGTAGACCACGGTCCCAACAATGCCGGGAA
GGAGCGATATGCCGGGTTTTCGCCGGCCAGGCTGCGTTTCGCTGTCGTCA
TCCTTGCGTTTGCGATACCAAACGATATGCCATGGGTTCATCGGATATAC
CTTAGGGTGGGGAGGGGGGGGGGGGGGGGG
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