mRNA_S-dermatodea_contig912.17195.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig912.17195.1 vs. uniprot
Match: D7FNF4_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF4_ECTSI) HSP 1 Score: 848 bits (2190), Expect = 5.530e-289 Identity = 543/921 (58.96%), Postives = 616/921 (66.88%), Query Frame = 1
Query: 4 PSLSSGALLALALLAAAIPSDAVKWPFKPPAPPWARALRSRVKVSFDDESLSFWDPFKNTAFNASATITPIAADIGRRAPGYVAYATLATGLGLFLPPKGMIAVNIAYVAAAVARSHEG-VETFCKDEGRVLLGCPSLHLALVGSALRALRFRVWRGLFVRATLFRLRYQLRFMRIYQPQWVTKGASPLGRIMQDTAHAARSVQGLFPDLCHQAALAAGGCRLPYWSDCRPPPRVEKGWIVNRRLDRRLKREFGTRARRVRPGDDYPLGLGLLGWRIPHRVLLGAARVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAEEGARLIAVLEQDTEQEEGVVLEVYEETVDENAGSTEDAQSESSQQETPGSWNAEAAAAAVGAVPTEGPLVRFHNVTAIPSRGSTLTKSYRALAELPYGDGRSAADDAAKTKSAPAWAAPDPYDKPQAGASGVG-----------VAAPVSPTRQPLA----------LQPVVIKRNLGRQLLLAEDDVTAARKVLRRMAFKAEIDLDLSGVLAEVVAAVARAKNLRYEAENIDRIRQNLKRAGMLGSAVGVPEVLSCPELGPLARRGIVVTTALRGVDVSDVYLMEHAAARGGKERDRFVDGVFAVFGQMCLADGCFPSNPMPENLLYMYSGQVGLTDLSSVTQLTEDQRRALCRLYRTMAELRGEDATSPSAAAELKARAAMEGVGLVIDLPPAGGIAWVSSDSAEDWTTEEAATAAVASAAESIIDATLGDEPXXXXXXXXXXXXXTV--------------EGRQEGTLEERNAGEXXXXXXXXXXXXXXXXXEELPEPTPPLAPRAPVTHLMLLRALFDTQQDEALDVVGGGGGRFLRSMAVRRLPQAMAPVLRMVANLRGVCAHLDVDKSLLPRFSRAASKGLSWRLALASSRG 2658
P L+ A LAL LLA A DA KW F AP A + RVKVSFDDES SFWDPFKN FN + + PIA ++GRRAPGY AYA +T LGLFLPPK M AVN+AYVAAAVARSHEG VETFC+DEGR+LLG PSLHLA G+ALRA RFR WR LFVRATLFRLRYQLRFMRIY+P+WV +G SPLG I+QDTA AARSVQGL PDLC QAA AGGCRL YWS+C PPPRVEKGW V RR+DRRL+RE G RA+R RP +G+GLLGWRIPHRV+LG R + +G+ V+E+ E+ V+ Y + AGS D + +++ A +P EGPLVRFHNVT I SRGSTLT+SYRALAELPYGDG+ D + S W A P G G V A + T P A LQPVVIKRN+ RQL+LAEDD+ AARKVLRR+ F+AEIDLD+SGVLA V AAV+RA +LR EA +I+++R NL +AGMLGS VGVPEVLSCPELG LAR+GI+VTTALRGVDVSD Y+M+HAA G KER RF+DGVF FGQMCLADGCFPSNP+PENLLYMYSGQVGLTDLSSVTQL E QRRALCRLY T+A+LR EDA +PS AAELKARAAME VGLVIDLPPAG XXXXXXXXXXXXX EG E E EXXXXXXXXXXXXXXXXX AP+T++MLLR LFDT++DEAL +VGGGG L+ MAVRRLPQAM PVL+MVANLRG+CAHLDVD+S+LPRFS+AASKGLSWR LASSRG
Sbjct: 3 PPLAHAASLALVLLAKACHVDASKWKFGAQAP----ATKKRVKVSFDDESFSFWDPFKNKGFNLTRAVGPIAEEVGRRAPGYAAYAAASTALGLFLPPKVMTAVNVAYVAAAVARSHEGGVETFCRDEGRLLLGMPSLHLAAAGTALRAARFRFWRRLFVRATLFRLRYQLRFMRIYRPRWVIRGGSPLGLIVQDTADAARSVQGLVPDLCRQAAFIAGGCRLAYWSECNPPPRVEKGWFVLRRVDRRLRRELGPRAQRARP-----VGVGLLGWRIPHRVVLGTLRF----VFRSPAARRENKRISGRAPRLVGAEGHEQGDGSGGGVVVEEVGEEYSTVL---YGDAGALAAGSDRDGVEDGTRRR-----GGRKEALMPEGIPAEGPLVRFHNVTTIASRGSTLTRSYRALAELPYGDGQ--VDPEGDSFSL--WYAKLQRGVPAGGGWGSAGDGGDRDEDEEVLARMESTPTPSAVAAAARKAATLQPVVIKRNVRRQLMLAEDDLAAARKVLRRLTFRAEIDLDMSGVLAAVAAAVSRAADLRTEARSIEKVRSNLFKAGMLGSVVGVPEVLSCPELGALARKGILVTTALRGVDVSDSYVMQHAAPGGEKERGRFLDGVFRAFGQMCLADGCFPSNPLPENLLYMYSGQVGLTDLSSVTQLAESQRRALCRLYHTLADLRREDAVNPSEAAELKARAAMESVGLVIDLPPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGHWEVGAEADEGKEXXXXXXXXXXXXXXXXXXXX---------SAPLTYVMLLRGLFDTRRDEALALVGGGGMELLKGMAVRRLPQAMVPVLKMVANLRGLCAHLDVDESILPRFSQAASKGLSWRKRLASSRG 889
BLAST of mRNA_S-dermatodea_contig912.17195.1 vs. uniprot
Match: A0A835ZDP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 3.520e-8 Identity = 70/205 (34.15%), Postives = 90/205 (43.90%), Query Frame = 1
Query: 97 PPWARALRSRVKVSFDDESLSFWDPFKNTAFNASATITPIAADIGRRAPGYVAYATLATGLGLFLPPKGMIAVNIAYVAAAVARSHEGVETFCKDEGRVLLG----CPSLHLALVGSALRALRFRVWRGLFVRA--TLFRLRYQLRFMRIYQPQWVTKGASPLGRIMQDTAHAARSVQGLFPDLCHQAALAAGGCRLPY---WSD 684
PP R + VS DD L FWDP + A AS AA + AP Y+ +++ + G LPP + + AA+AR+ V F G +LL P+ HLA + LR L +R WR +RA L LR LR P A+ L RI+ A + GL L AALAA G LPY W D
Sbjct: 45 PPSGRQKPKVMVVSHDDRELHFWDPLSSMA--ASGRNHTHAALVA--APAYLLHSSASIGAKALLPPP-CYSTLVLIRLAALARAANSVSAF----GALLLSELAMSPNTHLAAASALLRVLSYRAWRAAALRAHAALAALRCALRRR---SPLRRRGEAAALRRILSAAAADIVPLDGLAAALAFDAALAAEGAALPYAPAWPD 237 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig912.17195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig912.17195.1 >prot_S-dermatodea_contig912.17195.1 ID=prot_S-dermatodea_contig912.17195.1|Name=mRNA_S-dermatodea_contig912.17195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=924bp MPSLSSGALLALALLAAAIPSDAVKWPFKPPAPPWARALRSRVKVSFDDEback to top mRNA from alignment at S-dermatodea_contig912:10535..16952+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig912.17195.1 ID=mRNA_S-dermatodea_contig912.17195.1|Name=mRNA_S-dermatodea_contig912.17195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6418bp|location=Sequence derived from alignment at S-dermatodea_contig912:10535..16952+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig912:10535..16952+ >mRNA_S-dermatodea_contig912.17195.1 ID=mRNA_S-dermatodea_contig912.17195.1|Name=mRNA_S-dermatodea_contig912.17195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=5544bp|location=Sequence derived from alignment at S-dermatodea_contig912:10535..16952+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |