mRNA_S-dermatodea_contig912.17194.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig912.17194.1
Unique NamemRNA_S-dermatodea_contig912.17194.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: D7FNF5_ECTSI (Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF5_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 1.600e-115
Identity = 169/220 (76.82%), Postives = 194/220 (88.18%), Query Frame = 1 
Query:  376 VGEGETGEQLDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDINLVGSSFDAAMDAMMGLKGPDVEFTLFRGSKDDLKDLVGAEDPPAEFTVTVKQKGKPDVSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            V +G  GE+LDPRLY+VRI+R TGIEWGTDISFSWV++R LQP GAAA CGE+SVGDQLIAIND  L G+ FD AMDAM+ L+G DVEFT FRGS ++LK +VGAE PPAE TVTVKQ GKP+++L APSG NLR+ LT+NGINVYQS+TRWTNCKGKQLCGTCIV I++GLES T+RS+DESSTLRDNP NYRLSCVT+MYDDVTVTVFPP+GAAQWTR
Sbjct:  114 VKKGPNGEELDPRLYSVRIARATGIEWGTDISFSWVYIRALQPDGAAANCGEISVGDQLIAINDQTLAGAPFDVAMDAMIALEGTDVEFTFFRGSTEELKKVVGAEAPPAEITVTVKQDGKPELALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVAIDEGLESTTIRSVDESSTLRDNPPNYRLSCVTNMYDDVTVTVFPPVGAAQWTR 333
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A7S2XYE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE9_9STRA)

HSP 1 Score: 266 bits (681), Expect = 5.820e-80
Identity = 122/221 (55.20%), Postives = 169/221 (76.47%), Query Frame = 1 
Query:  388 ETGEQLDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDINLVGSSFDAAMDAMMGLKGPDVEFTLFRGSKDDLKDLVG-----AEDPPAEFTVTVKQKGKPDVSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            ++GE  DPRLY V + R TGI + +D+SF WV+VR+L P+GAA + G V  GDQ++AIN+ N +G+SF+  +D +  +KGP++ FT+FRGS D+LKDLV       E PP    +TV++K +PD+ L+AP G N+R+L+ +N INVYQS+TRWTNC GKQLCGTCIVE+ +GL + T++S+DE++ LR+NP +YRLSCVTD+Y D TV +FP +GAAQWTR
Sbjct:   89 DSGEPFDPRLYDVTVPRSTGILFASDLSFKWVYVRDLIPNGAAMRTGLVKKGDQVVAINEENALGASFNYVIDLISQVKGPEITFTMFRGSTDELKDLVEKNGGVVEKPPTTAKITVQRKDQPDLELEAPIGKNIRDLMIENKINVYQSLTRWTNCNGKQLCGTCIVEVTEGLNNLTLKSVDEATVLRENPPSYRLSCVTDIYGDATVKIFPAVGAAQWTR 309
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A835Z6S1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S1_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.770e-74
Identity = 117/220 (53.18%), Postives = 157/220 (71.36%), Query Frame = 1 
Query:  382 EGETGEQLDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDINLVGSSFDAAMDAMMGLKGPDVEFTLFRGSKDDLKDLVGAED--PPAEFTVTVKQKGKPDVSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            E ET E+ DPRL+   ISR TGI+WGTD+SF WV+VR L+P+G+AA+ G VS GDQL++ N  + VG+ FD  M       G DV+   FRG+  +L+ L G  D        +TV+Q GK D+ ++  +G NLR++L  NG+NVYQS+TRWTNCKG+QLCGTCIV++    ++CT++S+DE STLR NP +YRLSCVT++Y D+TV +FPPIG  QWTR
Sbjct:   73 EEETAEEDDPRLHTATISRATGIDWGTDLSFRWVYVRALEPNGSAARTGLVSKGDQLVSFNGESCVGAPFDFVMSLFSKATGTDVDLAFFRGTTAELRALAGGGDGADAERARITVQQPGKADLVIECAAGANLRDVLVGNGVNVYQSLTRWTNCKGRQLCGTCIVDVAGASDACTIKSVDERSTLRSNPPSYRLSCVTNVYKDITVQIFPPIGRDQWTR 292
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A6S9LXT1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LXT1_HETAK)

HSP 1 Score: 246 bits (628), Expect = 1.910e-72
Identity = 116/226 (51.33%), Postives = 161/226 (71.24%), Query Frame = 1 
Query:  361 PGEKGVGEGETGEQLDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDINLVGSSFDAAMDAMMGLKGPDVEFTLFRGSKDDLKDLVGAEDPPAEFTVTVKQKGK-PDVSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            P E+G    E   + DPRLY + +SR TGI+WGTD+SF WV+V  ++P GAA    ++  G QLIA+N  +++G+SFD AM A+    G +V  T FRG++++L++       P+  T+TV++KG+ P+  + AP+G NLR++L  N INVYQSITRWTNCKGKQLCGTCIV + +G ++ + R +DE+STLRDNP  YRLSCVT+M+ D+TV  +P IGA QWTR
Sbjct:   66 PEEEGAKVREDEGEDDPRLYNINLSRATGIDWGTDLSFRWVYVMNIEPGGAADLTDQIKKGHQLIAVNGQSVLGASFDLAMGALAAADGREVGLTFFRGTREELQEATVGSTGPSTITLTVREKGEGPEKIITAPAGANLRDVLIANNINVYQSITRWTNCKGKQLCGTCIVNVAEGFDNTSRRGIDEASTLRDNPPTYRLSCVTNMHGDLTVETYPEIGAYQWTR 291
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A7S3TKK5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKK5_9SPIT)

HSP 1 Score: 238 bits (607), Expect = 4.630e-70
Identity = 109/210 (51.90%), Postives = 150/210 (71.43%), Query Frame = 1 
Query:  406 DPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDINLVGSSFDAAMDAMMGLKGPDVEFTLFRGSKDDLKDLVGAEDPPAEFTVTVKQKGKPDVSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            DPRL +V + +VTGI++G D+S  W +V  L P GAA +  EV VGDQL+AI   +++G    +AM+ +   +G +VE   FRGS++ L+ L   E  PA  T+T+++K +PD   + P G NLR+ L   GINVYQS+TRWTNC GKQLCGTCIV++ +G+E CT RSLDE+STLR+NP  Y+L+C+T++Y DVTV + P +GAAQWTR
Sbjct:   33 DPRLLSVSLDKVTGIDFGCDLSLCWPYVLSLTPGGAAERQAEVKVGDQLLAIEGESVIGQPVASAMERIAAAEGKEVEMLFFRGSREALQALCAVEQGPATITLTLQRKDQPDEKFQLPYGCNLRDELISRGINVYQSVTRWTNCNGKQLCGTCIVDVVEGIEGCTRRSLDEASTLRENPETYKLACITNLYGDVTVKLMPKVGAAQWTR 242
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: K0RAN8_THAOC (2Fe-2S ferredoxin-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAN8_THAOC)

HSP 1 Score: 234 bits (596), Expect = 4.130e-68
Identity = 122/225 (54.22%), Postives = 154/225 (68.44%), Query Frame = 1 
Query:  406 DPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDI-------NLVGSSFDAAMDAMMGL--KGPDVEFTLFRGSKDDLKDLVGAED--PPAEFTVTVKQ-KGKPDVS---LKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            D RL  VRISR TGIEWGTD+SFS+V+VR++ P+G+A+  GE+ VGDQL  +  +       NL+G+ FD  M+A  GL  K   ++   FRG+KD+LKD    +    P   T+TV Q KG  D +   ++A +G N+R  L DNGINVYQS+TRWTNCKGKQLCGTCIV + +G      +S+DESSTLR+NP +YRLSCVT  Y DVTV  FPPI AAQWTR
Sbjct:   43 DTRLRRVRISRATGIEWGTDLSFSFVYVRDMDPAGSASISGEIEVGDQLCELRPVAEGGEATNLIGAPFDQVMNAFAGLDRKVTTLDLVFFRGTKDELKDACSGDSNAEPEIITITVVQNKGAKDETTRYIQAMAGANVRQTLVDNGINVYQSVTRWTNCKGKQLCGTCIVNVKEGGADTNRKSIDESSTLRENPESYRLSCVTFAYGDVTVETFPPIKAAQWTR 267
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: B8C497_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C497_THAPS)

HSP 1 Score: 235 bits (599), Expect = 7.370e-68
Identity = 138/263 (52.47%), Postives = 172/263 (65.40%), Query Frame = 1 
Query:  304 LRMSAAGDGDSSSSSSGEEPGEKGVGEGETGEQLDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLI---AIND-------INLVGSSFDAAMDAMMGLKGP--DVEFTLFRGSKDDLKDLVGA---EDPPAEFTVTVKQ-KGKPDVSLK---APSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            L  S+AG GDS+ +SS EE       E       DPRL  +R+ R TGIEWGTD+SFS+V+VR+L+PSGAA+  GEV +GDQ+    A++D       INL+G+ FD  M+A   LK    DV+   FRG+KD+LK         +   + T+TV Q KG  D  L+   A +G NLR +LTDNGINVYQS TRWTNCKGKQLCGTCIV I +G      +SLDE+STLR+NP +YRLSCVT  Y D+TV  FPPI A+QWTR
Sbjct:   63 LVYSSAG-GDSADTSSDEEA------EDPINTDSDPRLRRLRLPRATGIEWGTDLSFSFVYVRDLEPSGAASLSGEVEIGDQICELRAVSDSTGVGEVINLIGAPFDKVMEAFASLKKDVRDVDLVFFRGTKDELKAACAGGSFSEENEKITITVIQNKGSNDEELRTIEAKAGCNLRQVLTDNGINVYQSFTRWTNCKGKQLCGTCIVNIANGSGDTNRKSLDEASTLRENPESYRLSCVTFAYGDITVETFPPIEASQWTR 318
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A7S0UNM4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UNM4_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.680e-67
Identity = 122/233 (52.36%), Postives = 154/233 (66.09%), Query Frame = 1 
Query:  403 LDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAI------------NDINLVGSSFDAAMDAMMGLKGP--DVEFTLFRGSKDDLKDLVGAEDPPA--EFTVTV---KQKGKPD---VSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            +D RLY  R+SR  GIEWGTD+SFS+V+VREL+PSG AA  G V  GDQL  +              +NL+G+SFD  M     L+    +V+   FRG+KD+LK L   E      E TVT+   + KG P+   + L+AP+G N+R  L DNGINVYQS+TRWTNCKGKQLCGTCIV ++DGL +   +S+DE+STLR NP +YRLSCVT  + DVTV  FPP+ A QWTR
Sbjct:   73 VDGRLYRTRLSRAPGIEWGTDLSFSFVYVRELEPSGEAAMLGMVKQGDQLCELIPVVYDEDAPKPEPVNLLGASFDFVMTTFASLERTVSEVDLVFFRGTKDELKALCNGEAAKTGDEDTVTITVIQNKGSPEEKLIRLRAPTGVNVRQYLVDNGINVYQSLTRWTNCKGKQLCGTCIVNVSDGLPNTNWKSMDEASTLRSNPDSYRLSCVTFAHGDVTVETFPPVNADQWTR 305
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A448ZDP1_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP1_9STRA)

HSP 1 Score: 232 bits (591), Expect = 2.380e-66
Identity = 123/233 (52.79%), Postives = 158/233 (67.81%), Query Frame = 1 
Query:  403 LDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLI----AIND--------INLVGSSFDAAMDAMMGLKGP--DVEFTLFRGSKDDLKDLVGAE----DPPAEFTVTVKQ-KGKPD---VSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            +D RLY VR+SR  GIEWGTD+SFS+V+VR+++P+G A+  G VS GDQL      +ND        I+L+G+SFD  M +  GL+    +++   FRG+KD+LK L   E    D     T+TV Q KG P+   + L+AP G N+R  L DNGINVYQS+TRWTNCKGKQLCGTCIV I DGL +   +S+DE+STLR NP +YRLSCVT  + DVTV  +PP+ A QWTR
Sbjct:  113 VDERLYRVRLSRAPGIEWGTDLSFSFVYVRDMEPTGQASLSGLVSKGDQLCELIPVVNDEDAPRPEAISLLGASFDYVMTSFAGLEKTVSEIDLVFFRGTKDELKALCNGEAAGTDGDDTITITVVQNKGSPEEKLLRLRAPRGANVRQFLVDNGINVYQSVTRWTNCKGKQLCGTCIVNIADGLPNTNWKSMDEASTLRSNPDSYRLSCVTFAHGDVTVETYPPVNADQWTR 345
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BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Match: A0A1Z5KR35_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR35_FISSO)

HSP 1 Score: 229 bits (583), Expect = 8.920e-66
Identity = 120/226 (53.10%), Postives = 152/226 (67.26%), Query Frame = 1 
Query:  403 LDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSGAAAQCGEVSVGDQLIAINDIN-----LVGSSFDAAMDAMMGLKGP--DVEFTLFRGSKDDLKDLVG----AEDPPAEFTVTVKQ-KGKPD---VSLKAPSGTNLRNLLTDNGINVYQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPIGAAQWTR 1035
            LDPRLY VR+SR  GI+WGTD+SFS+V+VR++ P+G AA  GEV  GDQL  +  +      L+G+ FD  M+  + L     +++F  FRG+K +LK +       +    + TVTV Q KG  +   V+L A  G N+R LL DNGINVYQS+TRWTNCKGKQLCGTCIV I  G      +S+DE+STLR+NP +YRLSCVT  YDD+TV  FPPI AAQWTR
Sbjct:   75 LDPRLYKVRLSRAPGIDWGTDLSFSFVYVRDMDPAGDAAFSGEVQKGDQLCELTPVGGVPIPLIGAPFDLVMNTFVELDKSVREIDFVFFRGTKQELKAICANGNSIQGESEQITVTVIQNKGSQEEAVVTLTAKPGVNVRELLVDNGINVYQSVTRWTNCKGKQLCGTCIVNITKGSLGTNRKSMDEASTLRENPDSYRLSCVTFAYDDITVETFPPIKAAQWTR 300
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig912.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF5_ECTSI1.600e-11576.82Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus Ta... [more]
A0A7S2XYE9_9STRA5.820e-8055.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6S1_9STRA1.770e-7453.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9LXT1_HETAK1.910e-7251.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3TKK5_9SPIT4.630e-7051.90Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
K0RAN8_THAOC4.130e-6854.222Fe-2S ferredoxin-type domain-containing protein (... [more]
B8C497_THAPS7.370e-6852.47Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0UNM4_9STRA3.680e-6752.36Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A448ZDP1_9STRA2.380e-6652.792Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A1Z5KR35_FISSO8.920e-6653.102Fe-2S ferredoxin-type domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig912contigS-dermatodea_contig912:4491..10369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.9
Seed ortholog evalue6.2e-97
Seed eggNOG ortholog2880.D7FNF5
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S5MT@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons5
Model size2144
Cds size978
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.106185-UTR-S-dermatodea_contig912:4490..55961622925388.106185-UTR-S-dermatodea_contig912:4490..5596Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig912 4491..5596 -
1694079899.7820551-UTR-S-dermatodea_contig912:4490..55961694079899.7820551-UTR-S-dermatodea_contig912:4490..5596Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig912 4491..5596 -
1622925388.177865-UTR-S-dermatodea_contig912:10309..103691622925388.177865-UTR-S-dermatodea_contig912:10309..10369Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig912 10310..10369 -
1694079899.8383665-UTR-S-dermatodea_contig912:10309..103691694079899.8383665-UTR-S-dermatodea_contig912:10309..10369Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig912 10310..10369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.1194656-CDS-S-dermatodea_contig912:5596..57741622925388.1194656-CDS-S-dermatodea_contig912:5596..5774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 5597..5774 -
1694079899.794993-CDS-S-dermatodea_contig912:5596..57741694079899.794993-CDS-S-dermatodea_contig912:5596..5774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 5597..5774 -
1622925388.1303306-CDS-S-dermatodea_contig912:6893..70681622925388.1303306-CDS-S-dermatodea_contig912:6893..7068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 6894..7068 -
1694079899.80347-CDS-S-dermatodea_contig912:6893..70681694079899.80347-CDS-S-dermatodea_contig912:6893..7068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 6894..7068 -
1622925388.1427054-CDS-S-dermatodea_contig912:7701..78371622925388.1427054-CDS-S-dermatodea_contig912:7701..7837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 7702..7837 -
1694079899.811499-CDS-S-dermatodea_contig912:7701..78371694079899.811499-CDS-S-dermatodea_contig912:7701..7837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 7702..7837 -
1622925388.1535568-CDS-S-dermatodea_contig912:9396..96471622925388.1535568-CDS-S-dermatodea_contig912:9396..9647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 9397..9647 -
1694079899.819493-CDS-S-dermatodea_contig912:9396..96471694079899.819493-CDS-S-dermatodea_contig912:9396..9647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 9397..9647 -
1622925388.1636255-CDS-S-dermatodea_contig912:10071..103091622925388.1636255-CDS-S-dermatodea_contig912:10071..10309Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 10072..10309 -
1694079899.8281019-CDS-S-dermatodea_contig912:10071..103091694079899.8281019-CDS-S-dermatodea_contig912:10071..10309Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig912 10072..10309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig912.17194.1prot_S-dermatodea_contig912.17194.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig912 5597..10309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig912.17194.1

>prot_S-dermatodea_contig912.17194.1 ID=prot_S-dermatodea_contig912.17194.1|Name=mRNA_S-dermatodea_contig912.17194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=326bp
MMKASLCVALLFHCCSAFVPYCSTLSALPPATGCSSTAATAQSVRYTGSS
RGSSTASPRRLPRWRQLASRCSRAHDSTLGALRMSAAGDGDSSSSSSGEE
PGEKGVGEGETGEQLDPRLYAVRISRVTGIEWGTDISFSWVFVRELQPSG
AAAQCGEVSVGDQLIAINDINLVGSSFDAAMDAMMGLKGPDVEFTLFRGS
KDDLKDLVGAEDPPAEFTVTVKQKGKPDVSLKAPSGTNLRNLLTDNGINV
YQSITRWTNCKGKQLCGTCIVEINDGLESCTVRSLDESSTLRDNPANYRL
SCVTDMYDDVTVTVFPPIGAAQWTR*
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mRNA from alignment at S-dermatodea_contig912:4491..10369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig912.17194.1 ID=mRNA_S-dermatodea_contig912.17194.1|Name=mRNA_S-dermatodea_contig912.17194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5879bp|location=Sequence derived from alignment at S-dermatodea_contig912:4491..10369- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCAGCCCCGTGCCGACACCCTCTGTTTGAAGAGGGCACAGTTGCTATC
CTCTCCGCCAATGATGAAGGCATCCTTGTGCGTGGCCTTGCTATTTCATT
GCTGCAGCGCTTTCGTCCCCTACTGCTCCACGCTATCGGCGCTGCCACCA
GCAACGGGTTGTTCTTCGACCGCGGCAACAGCTCAGAGCGTCCGCTACAC
GGGCAGCAGCAGGGGGAGCAGCACGGCCTCACCGAGACGCTTGCCTCGAT
GGCGACAGCTCGCCTCCCGTTGCTCCCGAGCCCACGATAGTACTCTCGGT
GAGTCGCGCTGCTACTTCGAATTTGTATATCTGCACGCCGGGGAGTCGGT
GTCGCGCAGGCGAGGCACGAAGGCGGCTACAACGCGCTCGCCGGGGTTGT
GTGCTCGGTCCATCATTGCTCATGTTTCAGTCGTGTCCGTATTATAGTCG
AAACACTTTGATTGCCCGACACCGTTGGGAGCCTGCCTGCACAGCCCTGA
CAGACAGCAGTAGTTCAGGCAGCAACACAGCAAGTCCGCGAGCCTCTCTC
TCCCTTCCTCTCTCTTTGGCTCTCTCTCTCGTCGGAGCAGAGCTGAATCC
CCTCTCCCTTGCTACATAGACGTTTGTGCAGAGGCACAAACCGGACCCCC
CCCTCGCATCGATCAAACCTCTTTCTTTGGCGCTTGCCGCCCCTGTGGCA
CGTTGATTCGATTGGATTGAAGGTGCCCTGCGCATGTCAGCGGCGGGGGA
CGGCGATAGCAGTAGCAGTAGTAGTGGAGAGGAGCCAGGGGAGAAAGGGG
TGGGCGAAGGCGAAACCGGCGAGCAGCTGGATCCCCGACTCTACGCGGTG
AGGATATCGCGCGTTACGGGAATCGAGTGGGGCACGGACATCAGCTTCTC
GTGGGTGTTCGTGCGAGAGCTGCAGCCGTCGGGGGCGGCGGCGCAATGTG
GGGAAGTTTCCGTTGGAGATCAGGTGCGTCTGTTCGGGCACAGAACGCTA
TCATACGGAGGCACGGAGGAGGTGGTATAGTATGCAAGTATGAGTATGTA
CAACTATTAATAGTACAGTATACGAGTACGTGTGCAATTCAAAGTTTAAG
TTGCAGAAGCTAAAAGTTTGTGGTTGGTCGTATCTTACCACGGCCGTGCT
ACTACTCTGCGTTGTGGGTTGTGGCTGGCACCTTCCTGCTGAAAAACAGA
GCTATTAATAAATACGTACACTAAGTGTATGTATGATAAGGCACAGAAGA
AGCAAGTTGTATGATACAGTACAAGGTGAATGCTTACATTTTAGTAGAAG
TATGATCACTTGTACATCTGTAACTAGCGCTGGACGCTGCAAGATCATTT
GTCGCTGTCATCACGCTCTCTACTCGTATGTGCACATGTGTACATACCGT
ACAGCGCAAGATGCTCACGCCCCCCTTCTCTCTTATCAAGCATGCCTGTT
CACGAGCCGTAACAACAGAGGAGGACACACCCCTTCTCTCTTACCAAGCA
TGCCTGTTCACTAGCCGTAGCAACAGAGGAGGACACACCAGCAGTAAAGC
AGCTATTGTGTATATTCGCTTTTTGCATCTACTCTTCCATTAGCCAATCA
CAGCAGTTAGCGCAGGTCTTCGCGAGGCTTTTTATTACTCTGTGTACTTG
TACACGAGCTTCGACGCAGGTATTTCCGTAGATTTTCGATTTTCGTTTCG
ACATGTGACCACGAGAGCGGGATCGGCAACCGGTCTAGTGGTGTAAGCGC
GGTAATCAACAAAAAAATCAATCAATCAATCGAGACATGGGAGACACGCG
CCAGTATGTCGTATCTGTCGTTGTCGCGTCACCCGTGTCCCGTCCCTCTG
GCGTGGTCGCTCGTTAAAGCGCGGAGTCCAAACTTTGCCGGATGGGGAAC
GGCATGATGAAAGACACATCTCCTTCTTGTTGGTTTCCCGCCGAAATCCT
GAGATATTGTGTTCGCAGAGCTTCCGTGGGCCGGCAGTCTCGCCCGCTGT
TGAGGACAGAGAGGCTGGTCGGAATGCTTTTTTACAGCACATACACTATC
GTGATACTTCTATATCTGCGGTCATTACAGTAGGTGCCTTAGATACGGTC
TAATATTGCGTTCAAAACAAACGTTTTTGTTCCTGGACCAGCCATTTATG
ACACTGAAAACAGAGATCACCCAATCGCGTGTCAATCAATGCCCGCTGAC
GAATGGCATCGTGTCGTGGCACGAGCTTACCGCATGACCGTCATGTAGCT
GATTTATCCGTCGGTCGAGAGCCCCTTGCCCGAATGCTACAATAGAAAGG
CGTCGTCAATCCACACGCCTGTACTTGTACAGTAGTGGTCAAGCGAAGAA
AAACGACCACGCGGGGCGAAGCACCCCGCGGTGTCCCCAGAGGACTGCGC
TCGGCGAGCACATCAGCGTGTCTCTTTCTTGGTCCTCTCCCCTTCGGCCA
CGACTCACACCTCTCGCGCCCTCCATCCTTGCATCCCTTGCTCGGCCCCG
TCTAATCAAAACCCTGTGTTGTGGGATTACAGCTGATCGCCATCAACGAC
ATCAACTTGGTTGGGTCCTCGTTCGATGCCGCCATGGATGCCATGATGGG
CCTGAAGGGGCCGGACGTGGAATTCACCCTGTTCCGCGGGAGTAAAGACG
ATCTCAAGGATCTCGTCGGTAGGCGTGGGCCCTGGTCGAATGAAACCCGT
AGTTTGGTGTGGCATTCCTTCTCTGCACGTCGTCGTTGCTAGGTGTCCGC
CGTCGGTACACGGGTCCGCGGGGACGGTGATGGCGCGGTCTATATTGTGT
ACTAAAATGTTCAGCACCGATTAACTGGCGGGTGGCTGTAAGGCCGCAGA
GGGGTATCCGGCGTGCAGTGGCGGGATTGCTTTTTTTAGTCGTAAATGAC
ACGCTCAAATCACAAATCACAAGAGAGGAGAGAAACTAAAACACGTTTTT
TGTTTTCTTTTTTTCTCGGCGTTCGCACGTTTTGCAGCGATCGAAACCGA
CGTTTTCGTGTGTCGACCGTTGCGGGCATAATATTACAATATTGGAGGTG
TGTGTACACGTGGTGCTGTGCGTACCGTCGCACTTTGTGTATTTGATAAG
TGCACCACAAGCATCAGTTTTTTTTTTTTTAATAATACTCGCTCGCAAGA
CGGGTCGGATTAAAAGCCGATCGGCTATGATATTCGTGTGCAAATCAAAT
CAAATCAAATCAAATCAAATTAATCCTAAATCGCGGCGTATATATAACAA
TGCCTGACGCCTTTTTAACATGCAAAACAATAAACTCGTTCCGAAAAACA
GGGGCGGAGGACCCTCCCGCGGAGTTCACCGTGACGGTGAAGCAGAAGGG
AAAGCCGGACGTTAGCTTAAAGGCGCCCTCGGGGACAAATCTTCGTAACC
TCCTTACCGACAACGGGATCAACGTCTACCAGTCCATCACCCGCTGGACG
AACTGCAAGGGGAAGCAGCTGTGCGGGTGGGTGCCGCGTCGTTGGAGAGG
TCGCGTTGCTGCTGCTGCTGCTCCTGCCTGCCTGCAAGCGGCGGGTGTTC
GATTGGCGGATGCATGTTTTTGCTGCCTTCGTTGTCGTCCGTCGCGGCCG
CTATCATATGATGATGAGAATGCAGAGAGCAGAGCAAAAACTGTCGTTTC
GGTGTGTGTTGATCGATTTTTTGTAAGCGGTTTATTGTGTGTGGTTTGTG
ACGTCAACGTTCAATGCGCTGCCTTCGGTTGAAGCAGTTTACCTCTCCGA
TCGTGGAGGTTGTTTGTAGTGGTAAGTTACACGTCAAATCTGCCTGTTCC
CCTGCACGCGAAAAAATTGCATCATACGTGCTGTTTTCGCGCCTGGGGCT
ATACAAGCGTAAACCGAGTACTTGTACGTAAAATGTACAAAAAAATACTA
TTACGATACTCTTTAGTACTTTACTGTGTCTCTTCTAGGTGGATGGCACA
TGCGTTCGGTTTATGTGTGCTCCGTTCCGAACCGGACGTGTCAACCCGAG
TCAGGAGGTGTAATAATGCGCCCGCTCTTTTCCGCTTGGGTGTCGCGTGC
TCGTCCTTCCTCACAAATGCGCGGCGGTCAGCATCACGGGTAGGGCAGCA
AAACTGAGCACAGCCGATCTCATACATACTGCCGTAGCATACATGCATAC
ACATAGATACCCTTACTATAGTAGATCGTAAGAAGAGGCGTTTGCACCAA
GACAGCCAGCCCCAGGGGCCCGTCACGCAGCTTCTCCTTTTAATAAAACA
TTTCCTCTGCCGACACGTTTAAAAATCACTGCCTTATGTTTAAAAATCAC
TGTCTTATGTACGTTATGTACGTATGTATGTATGTATGTATGTATGTGTG
TACGCGCGTGGCACGCAGCTCGCCTATATAGCTTTAGTATATTTATTGCT
TGCTGTGGTCGTCGTACCGTGTGCTCCCCCCCCCGCCCCCCCCCCCACCC
TGCCTCCCGAGGACGCGTGGTCAATGGGCTAGCAGCAACATCCAAAACTT
GAGTACACCCCCCCCTCGCTCCCCGCACCCCTCGCCCCCCGCTCACAACG
TACCCGCCGCCGTTAATTAACGCCGCCGACGCCGTCGCCGTGTAGCACCT
GCATCGTGGAGATCAACGACGGGCTTGAGAGCTGCACGGTGCGGTCGCTA
GACGAGAGCTCGACGCTGCGGGACAACCCTGCCAACTATCGGCTGTCGTG
CGTGACCGACATGTACGACGATGTTACCGTTACGGTGTTCCCTCCTATCG
GAGCTGCCCAGTGGACCCGATGAGGAGAGAGAAGAGGGCGAGAGACGCGG
CGCGCTCTTTTTGCTATAATCGTACGTTGTTTTTTTGCTTTCGCAGCGCG
TGGAGAGACCAAAGAAGAAGAAGAAAAAGAAGAAGAATGAGGTGGAGACA
TATGAGGAAGAAGAGGGCTGGCTCCGAGTTTTGTTTTGGAATTTGTTGGG
GCTCGTTCGTTCACCGGTAACAAAACAGCCTGGGGCGGCGAAGGCTGTTG
TTTTGTTTGTATGGTGCGGTGGGCGGTGGTAAATTTATATTAGAGGGGGC
ATTACAAAACGTATTACTCGGGAGTTGAATCAGCGTGGTTGTAGTAGGGC
TATAGCTATTAGAGCGCTGACGCGGAGAAGGTTTGCTGGGGAGGGTGGTG
TGTGGCTTTGGGCCGGTGCTGCTGCTATGTATGATAACGCTGGGCGGAGT
TGTAACTCTTTTTAGGTTCCACTGGAGGGTCAAGACGTAGAGTTGGGCAG
GTATGCGTTCCTTTGAGTCTCGCTTGTGATATTTATCTGCTGGTGGAGGC
GCTTCAAGACACGCACAATACTTGAAAGGGGGGGAAGAGGCTTGAGGCTC
ACCTATTCTGTACAAGTACCATGGCAGGCATCGCTTGACCAAAGAAAAAA
CAGGGCGTTCGTCTCCATCTAGTTCATTCAGGCAGTGTGCGGCACGGAGG
GCGAAGCATCCAGAACAAGAGGGTGGTACTGTAAGTCGGCAGCTCGGCGG
TCCAATTTTCTCCAGAAACAGAGTGTACACAATCCGAGCGAACGGCGAGA
GCTGCCAGAGTGCTTAAAAATACATCAGTTTGCGATAAAAACACAAGGAG
GCGTGTATGATACTCCAGGGGAGAGCTGAGTTGATATCTGGTGACCCCAG
ACGGAATTAGGACTGCCGTCACCCAGGGGCAATAAACACCGACCGAGGTA
GGGAAATTGTCCCCCTAAAAACCCTTCGTAAGTACGGTATCATTGTACAT
AAATGTGCCAGATCCGACAGAAAAGTATCTCGAGCATCGTAACAATAACT
CAACGCAACAGAGTTCTGCCCTCTCACGCGGCGGTCGTATGCATACATTA
TTATTACGAGTACTTTAACAGCGCGTCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig912:4491..10369-

>mRNA_S-dermatodea_contig912.17194.1 ID=mRNA_S-dermatodea_contig912.17194.1|Name=mRNA_S-dermatodea_contig912.17194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1956bp|location=Sequence derived from alignment at S-dermatodea_contig912:4491..10369- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGAAGGCATCCTTGTGCGTGGCCTTGCTATTTCATTGCTGCAGCGC
TTTCGTCCCCTACTGCTCCACGCTATCGGCGCTGCCACCAGCAACGGGTT
GTTCTTCGACCGCGGCAACAGCTCAGAGCGTCCGCTACACGGGCAGCAGC
AGGGGGAGCAGCACGGCCTCACCGAGACGCTTGCCTCGATGGCGACAGCT
CGCCTCCCGTTGCTCCCGAGCCCACGATAGTACTCTCGATGATGAAGGCA
TCCTTGTGCGTGGCCTTGCTATTTCATTGCTGCAGCGCTTTCGTCCCCTA
CTGCTCCACGCTATCGGCGCTGCCACCAGCAACGGGTTGTTCTTCGACCG
CGGCAACAGCTCAGAGCGTCCGCTACACGGGCAGCAGCAGGGGGAGCAGC
ACGGCCTCACCGAGACGCTTGCCTCGATGGCGACAGCTCGCCTCCCGTTG
CTCCCGAGCCCACGATAGTACTCTCGGTGCCCTGCGCATGTCAGCGGCGG
GGGACGGCGATAGCAGTAGCAGTAGTAGTGGAGAGGAGCCAGGGGAGAAA
GGGGTGGGCGAAGGCGAAACCGGCGAGCAGCTGGATCCCCGACTCTACGC
GGTGAGGATATCGCGCGTTACGGGAATCGAGTGGGGCACGGACATCAGCT
TCTCGTGGGTGTTCGTGCGAGAGCTGCAGCCGTCGGGGGCGGCGGCGCAA
TGTGGGGAAGTTTCCGTTGGAGATCAGGTGCCCTGCGCATGTCAGCGGCG
GGGGACGGCGATAGCAGTAGCAGTAGTAGTGGAGAGGAGCCAGGGGAGAA
AGGGGTGGGCGAAGGCGAAACCGGCGAGCAGCTGGATCCCCGACTCTACG
CGGTGAGGATATCGCGCGTTACGGGAATCGAGTGGGGCACGGACATCAGC
TTCTCGTGGGTGTTCGTGCGAGAGCTGCAGCCGTCGGGGGCGGCGGCGCA
ATGTGGGGAAGTTTCCGTTGGAGATCAGCTGATCGCCATCAACGACATCA
ACTTGGTTGGGTCCTCGTTCGATGCCGCCATGGATGCCATGATGGGCCTG
AAGGGGCCGGACGTGGAATTCACCCTGTTCCGCGGGAGTAAAGACGATCT
CAAGGATCTCGTCGCTGATCGCCATCAACGACATCAACTTGGTTGGGTCC
TCGTTCGATGCCGCCATGGATGCCATGATGGGCCTGAAGGGGCCGGACGT
GGAATTCACCCTGTTCCGCGGGAGTAAAGACGATCTCAAGGATCTCGTCG
GGGCGGAGGACCCTCCCGCGGAGTTCACCGTGACGGTGAAGCAGAAGGGA
AAGCCGGACGTTAGCTTAAAGGCGCCCTCGGGGACAAATCTTCGTAACCT
CCTTACCGACAACGGGATCAACGTCTACCAGTCCATCACCCGCTGGACGA
ACTGCAAGGGGAAGCAGCTGTGCGGGGGCGGAGGACCCTCCCGCGGAGTT
CACCGTGACGGTGAAGCAGAAGGGAAAGCCGGACGTTAGCTTAAAGGCGC
CCTCGGGGACAAATCTTCGTAACCTCCTTACCGACAACGGGATCAACGTC
TACCAGTCCATCACCCGCTGGACGAACTGCAAGGGGAAGCAGCTGTGCGG
CACCTGCATCGTGGAGATCAACGACGGGCTTGAGAGCTGCACGGTGCGGT
CGCTAGACGAGAGCTCGACGCTGCGGGACAACCCTGCCAACTATCGGCTG
TCGTGCGTGACCGACATGTACGACGATGTTACCGTTACGGTGTTCCCTCC
TATCGGAGCTGCCCAGTGGACCCGATGACACCTGCATCGTGGAGATCAAC
GACGGGCTTGAGAGCTGCACGGTGCGGTCGCTAGACGAGAGCTCGACGCT
GCGGGACAACCCTGCCAACTATCGGCTGTCGTGCGTGACCGACATGTACG
ACGATGTTACCGTTACGGTGTTCCCTCCTATCGGAGCTGCCCAGTGGACC
CGATGA
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