mRNA_S-dermatodea_contig91192.17192.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91192.17192.1
Unique NamemRNA_S-dermatodea_contig91192.17192.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.350e-22
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLRHLLDKMVDC LKR+GVKSSAP+RLAETT INRIFGGYLRS++
Sbjct:  368 RQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRL 419          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.450e-17
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLRHL+DKM    L+RRGV   APNRLAETT I+R+FGGYLRSQ+
Sbjct:  237 RQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQL 288          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.600e-17
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLR L+D M +  L+R GVK++AP+RL ETTAINR+FGGYLR+QV
Sbjct:   98 RQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQV 149          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.950e-16
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLRHLLD + + CL+   VKS+AP RLAETT ++RIFGGYLRSQV
Sbjct:  251 RQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 79.3 bits (194), Expect = 5.330e-16
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLRHLLD +   CL+   VKS+AP RLAETT ++RIFGGYLRSQV
Sbjct:  251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-16
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLRHLLD +   CL+   VKS+AP RLAETT ++RIFGGYLRSQV
Sbjct:  251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQV 302          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.810e-14
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    4 QEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            QEDAHE LRHL+DKM    L+RRGV   A NRL ETT I+R+FGGYLRSQ+
Sbjct:  299 QEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQL 349          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A7R9YFU1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.470e-12
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLRHLLD +   CL R G+K +   R  ET+AI RIFGGYLRSQ+
Sbjct:  130 RQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQL 181          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A7S1CK59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK59_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.770e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRSQV 156
            RQEDAHEFLR LLD +    L+   +K +A  RLAETTA++R+FGGYLRSQV
Sbjct:   99 RQEDAHEFLRCLLDGLHKNELRHHRLKETAAGRLAETTAVHRVFGGYLRSQV 150          
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Match: A0A7S3XUI1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUI1_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 8.270e-12
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 RQEDAHEFLRHLLDKMVDCCLKRRGVKSSA--PN--RLAETTAINRIFGGYLRSQV 156
            RQEDA EFL HLLD MV   L+R  VK +A  PN  R++ETTAI+RIFGGYLR+QV
Sbjct:   16 RQEDAQEFLCHLLDAMVKTELRRARVKENATGPNGERISETTAIHRIFGGYLRNQV 71          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91192.17192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJN5_9PHAE2.350e-2288.46USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LD98_ECTSI4.450e-1775.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A835YLY7_9STRA5.600e-1771.15USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A4D9CS17_9STRA3.950e-1673.08Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
K8ZBR0_NANGC5.330e-1673.08Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
W7TEV7_9STRA5.390e-1673.08Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=N... [more]
A0A6H5JKG0_9PHAE5.810e-1468.63Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A7R9YFU1_9STRA1.470e-1265.38Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A7S1CK59_9STRA4.770e-1263.46Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3XUI1_HETAK8.270e-1266.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91192contigS-dermatodea_contig91192:226..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925387.959216-CDS-S-dermatodea_contig91192:225..3811622925387.959216-CDS-S-dermatodea_contig91192:225..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91192 226..381 -
1694079899.7187216-CDS-S-dermatodea_contig91192:225..3811694079899.7187216-CDS-S-dermatodea_contig91192:225..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91192 226..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91192.17192.1prot_S-dermatodea_contig91192.17192.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91192 226..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91192.17192.1

>prot_S-dermatodea_contig91192.17192.1 ID=prot_S-dermatodea_contig91192.17192.1|Name=mRNA_S-dermatodea_contig91192.17192.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=52bp
RQEDAHEFLRHLLDKMVDCCLKRRGVKSSAPNRLAETTAINRIFGGYLRS
QV
back to top

mRNA from alignment at S-dermatodea_contig91192:226..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91192.17192.1 ID=mRNA_S-dermatodea_contig91192.17192.1|Name=mRNA_S-dermatodea_contig91192.17192.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig91192:226..381- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCAGGAGGACGCACACGAGTTTCTACGGCATCTGCTGGACAAGATGGT GGACTGCTGCCTCAAACGCCGAGGGGTCAAGTCCTCCGCCCCGAACCGCC TTGCTGAGACGACCGCCATCAACCGCATTTTCGGAGGCTACCTGCGCAGC CAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig91192:226..381-

>mRNA_S-dermatodea_contig91192.17192.1 ID=mRNA_S-dermatodea_contig91192.17192.1|Name=mRNA_S-dermatodea_contig91192.17192.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig91192:226..381- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCAGGAGGACGCACACGAGTTTCTACGGCATCTGCTGGACAAGATGGT
GGACTGCTGCCTCAAACGCCGAGGGGTCAAGTCCTCCGCCCCGAACCGCC
TTGCTGAGACGACCGCCATCAACCGCATTTTCGGAGGCTACCTGCGCAGC
CAGGTGCGGCAGGAGGACGCACACGAGTTTCTACGGCATCTGCTGGACAA
GATGGTGGACTGCTGCCTCAAACGCCGAGGGGTCAAGTCCTCCGCCCCGA
ACCGCCTTGCTGAGACGACCGCCATCAACCGCATTTTCGGAGGCTACCTG
CGCAGCCAGGTG
back to top