mRNA_S-dermatodea_contig9114.17190.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9114.17190.1
Unique NamemRNA_S-dermatodea_contig9114.17190.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9114.17190.1 vs. uniprot
Match: A0A6H5L0A5_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-14
Identity = 56/152 (36.84%), Postives = 71/152 (46.71%), Query Frame = 1 
Query:  115 TSGSGGVFCPTWDWGRAACDPGARLPGSFVDRRYEQVDSATGAYG-------------------GDGRADMEDDEESSKTEGEXXXXXXXXRREAGYQDTKFSSEASSPSMGEA----------PATAGAPQQRNPEADLKAEAAVGLDGVG 483
            TSGSGGVFCPTWDWGRAAC+P  RLPGSFVDRR+E+VD                          G+ R +   + +    E          RR    +      EAS P +  +          P     P+ R+  AD+KAEA VGL+G+G
Sbjct:  587 TSGSGGVFCPTWDWGRAACEPAMRLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXXXRDEGESRQEFAQESDDEGPEARPDTSSTAHRR---GEAIVTPDEASLPHVSVSFVGSDEPRPTPTAPVPPRPRDTRADMKAEADVGLEGIG 735
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BLAST of mRNA_S-dermatodea_contig9114.17190.1 vs. uniprot
Match: D7FPT6_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT6_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:  115 TSGSGGVFCPTWDWGRAACDPGARLPGSFVDRRYEQVD 228
            TSGSGGVFCPTWDWGRAAC+P  RLPGSFVDRR+E+VD
Sbjct:  853 TSGSGGVFCPTWDWGRAACEPAIRLPGSFVDRRFEEVD 890
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9114.17190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A5_9PHAE1.070e-1436.84HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D7FPT6_ECTSI1.500e-1486.84Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9114contigS-dermatodea_contig9114:3846..4919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue6.2e-13
Seed eggNOG ortholog2880.D7FPT6
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-18_001660.1
Exons2
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925387.8508265-CDS-S-dermatodea_contig9114:3845..42171622925387.8508265-CDS-S-dermatodea_contig9114:3845..4217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9114 3846..4217 +
1694079899.6436398-CDS-S-dermatodea_contig9114:3845..42171694079899.6436398-CDS-S-dermatodea_contig9114:3845..4217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9114 3846..4217 +
1622925387.8605704-CDS-S-dermatodea_contig9114:4796..49191622925387.8605704-CDS-S-dermatodea_contig9114:4796..4919Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9114 4797..4919 +
1694079899.6567683-CDS-S-dermatodea_contig9114:4796..49191694079899.6567683-CDS-S-dermatodea_contig9114:4796..4919Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9114 4797..4919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9114.17190.1prot_S-dermatodea_contig9114.17190.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9114 3846..4919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9114.17190.1

>prot_S-dermatodea_contig9114.17190.1 ID=prot_S-dermatodea_contig9114.17190.1|Name=mRNA_S-dermatodea_contig9114.17190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=165bp
MSSVTNGDDPDAYEDVDEENDHDSTFSLRRTGPGIVPRTSGSGGVFCPTW
DWGRAACDPGARLPGSFVDRRYEQVDSATGAYGGDGRADMEDDEESSKTE
GEDMDDDEEERREAGYQDTKFSSEASSPSMGEAPATAGAPQQRNPEADLK
AEAAVGLDGVGELLA
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mRNA from alignment at S-dermatodea_contig9114:3846..4919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9114.17190.1 ID=mRNA_S-dermatodea_contig9114.17190.1|Name=mRNA_S-dermatodea_contig9114.17190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1074bp|location=Sequence derived from alignment at S-dermatodea_contig9114:3846..4919+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCTCCGTGACCAATGGCGACGACCCGGACGCGTACGAAGATGTCGA
CGAGGAGAACGACCACGACTCCACCTTCTCCCTGAGGAGGACCGGTCCCG
GGATCGTTCCCCGCACGAGCGGCAGCGGAGGCGTTTTTTGTCCGACATGG
GACTGGGGCAGGGCCGCGTGCGACCCCGGCGCAAGGCTTCCCGGATCGTT
TGTCGACCGTCGGTACGAGCAGGTGGATTCCGCGACCGGTGCCTACGGCG
GCGACGGCCGCGCCGACATGGAGGATGACGAGGAGTCGAGCAAGACGGAG
GGTGAAGACATGGATGATGATGAGGAGGAGAGGAGGGAGGCCGGCTACCA
AGATACTAAGTTTTCGAGCGAGGTGCGATGCTTTGGTTGTGGCGTCCGTG
CGTGTGGCGTTTGTTTTGTTCGTTTGTCGTTCTTTTGCAGACGTGGGGTG
GAGTGTACACACAGGCATGTTGTATCGTCGGAAATTTGTATTTGCTGTTG
CTGCGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACC
CCCTCCCCCCCCCTCCCCCCCTCCTCCTCCCTGTTCACCTCTTCTTGTTC
ATCCCTACTCNNNNNNNNNNGACGAGAGCCACCGGCCACAAAAAAAAAAA
AATGAGAGAAGAATTTCTTTTTTTCTTTTTTCCCCTTTTTTTGTTGTTTT
TTTTTTTTTTTTTTTTTTTTTTTTGTCTCCCCCCCCCCCCCCCCCCCCCC
CGCCCTCAGCCTCCCAGTGTCATCACCGCCTGTCGTGATTTATGGTTCTT
TGGTTGAATGCCTTACATCACACATCCCTCGTCCTCACTGCTGACTGAAA
CAAACCATATCCCCGCCTTTTACGCTAAAATAGAATCGATCCTTCTTCAC
ATTTAACCCCCCCCCCCCCCCCCCCCCCCCCCCACACACACACACCTGCA
GGCTTCCTCGCCCTCCATGGGAGAAGCTCCCGCGACCGCGGGCGCTCCCC
AGCAGCGAAACCCGGAAGCCGACCTCAAAGCCGAGGCAGCCGTTGGCCTG
GACGGCGTCGGGGAGCTCTTGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9114:3846..4919+

>mRNA_S-dermatodea_contig9114.17190.1 ID=mRNA_S-dermatodea_contig9114.17190.1|Name=mRNA_S-dermatodea_contig9114.17190.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at S-dermatodea_contig9114:3846..4919+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCTCCGTGACCAATGGCGACGACCCGGACGCGTACGAAGATGTCGA
CGAGGAGAACGACCACGACTCCACCTTCTCCCTGAGGAGGACCGGTCCCG
GGATCGTTCCCCGCACGAGCGGCAGCGGAGGCGTTTTTTGTCCGACATGG
GACTGGGGCAGGGCCGCGTGCGACCCCGGCGCAAGGCTTCCCGGATCGTT
TGTCGACCGTCGGTACGAGCAGGTGGATTCCGCGACCGGTGCCTACGGCG
GCGACGGCCGCGCCGACATGGAGGATGACGAGGAGTCGAGCAAGACGGAG
GGTGAAGACATGGATGATGATGAGGAGGAGAGGAGGGAGGCCGGCTACCA
AGATACTAAGTTTTCGAGCGAGATGTCCTCCGTGACCAATGGCGACGACC
CGGACGCGTACGAAGATGTCGACGAGGAGAACGACCACGACTCCACCTTC
TCCCTGAGGAGGACCGGTCCCGGGATCGTTCCCCGCACGAGCGGCAGCGG
AGGCGTTTTTTGTCCGACATGGGACTGGGGCAGGGCCGCGTGCGACCCCG
GCGCAAGGCTTCCCGGATCGTTTGTCGACCGTCGGTACGAGCAGGTGGAT
TCCGCGACCGGTGCCTACGGCGGCGACGGCCGCGCCGACATGGAGGATGA
CGAGGAGTCGAGCAAGACGGAGGGTGAAGACATGGATGATGATGAGGAGG
AGAGGAGGGAGGCCGGCTACCAAGATACTAAGTTTTCGAGCGAGGCTTCC
TCGCCCTCCATGGGAGAAGCTCCCGCGACCGCGGGCGCTCCCCAGCAGCG
AAACCCGGAAGCCGACCTCAAAGCCGAGGCAGCCGTTGGCCTGGACGGCG
TCGGGGAGCTCTTGGCGGCTTCCTCGCCCTCCATGGGAGAAGCTCCCGCG
ACCGCGGGCGCTCCCCAGCAGCGAAACCCGGAAGCCGACCTCAAAGCCGA
GGCAGCCGTTGGCCTGGACGGCGTCGGGGAGCTCTTGGCG
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