mRNA_S-dermatodea_contig910.17180.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig910.17180.1
Unique NamemRNA_S-dermatodea_contig910.17180.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig910.17180.1 vs. uniprot
Match: A0A6H5KIR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.410e-12
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  311 SALDEYLDNPPDASLWPKSREECGECGKRGRFYCPDCLVFV 433
            SA+++YL+ PPD +LWPK+R+EC  CGKR R YCPDCL+ V
Sbjct:    9 SAMEDYLERPPDINLWPKARQECHRCGKRVRLYCPDCLLLV 49
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BLAST of mRNA_S-dermatodea_contig910.17180.1 vs. uniprot
Match: D8LC29_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC29_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 7.720e-11
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 2 
Query:  311 SALDEYLDNPPDASLWPKSREECGECGKRGRFYCPDCLVFV 433
            SA++EYL+ PPD +LWP+ R+EC  CGKR R YCPDCL+ V
Sbjct:    9 SAMEEYLERPPDINLWPQGRQECHRCGKRVRLYCPDCLILV 49
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig910.17180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIR2_9PHAE7.410e-1263.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC29_ECTSI7.720e-1163.41tRNA-uridine aminocarboxypropyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig910contigS-dermatodea_contig910:23101..23533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog2880.D8LC29
Preferred nameDTWD1
EggNOG free text desc.DTW
EggNOG OGsKOG3795@1,KOG3795@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925386.8966985-UTR-S-dermatodea_contig910:23100..233441622925386.8966985-UTR-S-dermatodea_contig910:23100..23344Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig910 23101..23344 +
1694079898.9785593-UTR-S-dermatodea_contig910:23100..233441694079898.9785593-UTR-S-dermatodea_contig910:23100..23344Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig910 23101..23344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925386.906712-CDS-S-dermatodea_contig910:23344..235331622925386.906712-CDS-S-dermatodea_contig910:23344..23533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig910 23345..23533 +
1694079898.996817-CDS-S-dermatodea_contig910:23344..235331694079898.996817-CDS-S-dermatodea_contig910:23344..23533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig910 23345..23533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig910.17180.1prot_S-dermatodea_contig910.17180.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig910 23345..23533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig910.17180.1

>prot_S-dermatodea_contig910.17180.1 ID=prot_S-dermatodea_contig910.17180.1|Name=mRNA_S-dermatodea_contig910.17180.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
MKAHPSVRDLETEERQDLAVPPSALDEYLDNPPDASLWPKSREECGECGK
RGRFYCPDCLVFV
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mRNA from alignment at S-dermatodea_contig910:23101..23533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig910.17180.1 ID=mRNA_S-dermatodea_contig910.17180.1|Name=mRNA_S-dermatodea_contig910.17180.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=433bp|location=Sequence derived from alignment at S-dermatodea_contig910:23101..23533+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGGGGCGGGCCCTATCACGGCGTCGGTGACGGTCCTCGCGGTCTCATA
AAAGATCATTCACACAAGGTCCGAAAACACACGCGTTTTGTTCCTTGGGT
ACATTGATTGCAAGGAAGGGCAAGAGGGCAAGCAACAAGCAAGCTGCAGC
AGTCAGCAGATCAGCTACACGGTCGAAGAGAGCAGCCAATAGAACGAACA
GCTGGTGCCAGTAGGCTAACCAGGTCGTGCATTGGCCTACAGCAATGAAG
GCGCACCCAAGTGTACGCGACCTGGAGACGGAGGAGCGGCAGGACCTGGC
AGTTCCGCCGTCGGCCTTGGATGAGTATCTAGACAACCCTCCCGACGCCT
CTCTTTGGCCCAAGTCTCGAGAGGAGTGCGGAGAGTGCGGCAAGCGAGGG
CGGTTCTACTGCCCCGACTGCCTCGTGTTCGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig910:23101..23533+

>mRNA_S-dermatodea_contig910.17180.1 ID=mRNA_S-dermatodea_contig910.17180.1|Name=mRNA_S-dermatodea_contig910.17180.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig910:23101..23533+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGCGCACCCAAGTGTACGCGACCTGGAGACGGAGGAGCGGCAGGA
CCTGGCAGTTCCGCCGTCGGCCTTGGATGAGTATCTAGACAACCCTCCCG
ACGCCTCTCTTTGGCCCAAGTCTCGAGAGGAGTGCGGAGAGTGCGGCAAG
CGAGGGCGGTTCTACTGCCCCGACTGCCTCGTGTTCGTGATGAAGGCGCA
CCCAAGTGTACGCGACCTGGAGACGGAGGAGCGGCAGGACCTGGCAGTTC
CGCCGTCGGCCTTGGATGAGTATCTAGACAACCCTCCCGACGCCTCTCTT
TGGCCCAAGTCTCGAGAGGAGTGCGGAGAGTGCGGCAAGCGAGGGCGGTT
CTACTGCCCCGACTGCCTCGTGTTCGTG
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