mRNA_S-dermatodea_contig91.17175.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91.17175.1
Unique NamemRNA_S-dermatodea_contig91.17175.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: D7FPM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM0_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 1.500e-105
Identity = 158/165 (95.76%), Postives = 164/165 (99.39%), Query Frame = 2 
Query:   44 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTI+NRQATVSVIPAASSLILKALNEPERDRKKVK+IKHDGNVTLDQVI+IAR MRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRD+Q+GISEGEIVIP+E
Sbjct:    1 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIINRQATVSVIPAASSLILKALNEPERDRKKVKNIKHDGNVTLDQVIEIARVMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDIQSGISEGEIVIPDE 165
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A835YTI9_9STRA (Ribosomal protein L11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI9_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.360e-91
Identity = 140/165 (84.85%), Postives = 154/165 (93.33%), Query Frame = 2 
Query:   44 MGPPPP-TGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPE 535
            MGPPPP + E +YV+LRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQK+T +WKGLPITVKLTIVNRQATVSVIP+ASSLILKALNEPERDRKKVKH+KHDGNVTLDQ+ID+AR MR RSMARTLAGTVKE+LGT  SVGCTVNG +PRDVQ  I++GEIVIP+
Sbjct:    1 MGPPPPASAEEKYVVLRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKSTMDWKGLPITVKLTIVNRQATVSVIPSASSLILKALNEPERDRKKVKHVKHDGNVTLDQIIDVARVMRARSMARTLAGTVKEVLGTAFSVGCTVNGMAPRDVQKAITDGEIVIPD 165
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A7S2UAZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAZ7_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.080e-82
Identity = 121/165 (73.33%), Postives = 151/165 (91.52%), Query Frame = 2 
Query:   44 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            MGPPP + + Q VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKG+ +TVKLT+VNRQATV++IPAASSLI+KALNEP RDRKKVK++ H+GN+TL+QVIDIA+ MRERSMAR L+GTVKE+LGTCNS+GCTVNG+SPRD+QAGI +GE+VIP+E
Sbjct:    1 MGPPP-SNDVQIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGMNVTVKLTVVNRQATVTMIPAASSLIMKALNEPVRDRKKVKNVVHNGNITLEQVIDIAKVMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVVIPDE 164
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: B8BTS3_THAPS (RL12, ribosomal protein 11 60S large ribosomal subunit n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8BTS3_THAPS)

HSP 1 Score: 252 bits (643), Expect = 2.820e-80
Identity = 118/161 (73.29%), Postives = 146/161 (90.68%), Query Frame = 2 
Query:   56 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            PP+ + + VI+R +GGEVG+ ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT+VNRQATVS+IP+ASSL++KALNEP RDRKKVK++ H+GN+TLDQVIDIAR MRERSMA+ LAGTVKE+LGT NS+GCTVNG+SPRD+QAGI +GE+ IPEE
Sbjct:    4 PPSDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A7R9U1B9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B9_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.960e-80
Identity = 119/165 (72.12%), Postives = 145/165 (87.88%), Query Frame = 2 
Query:   44 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            MGPPPP GE + VI+RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+  T +WKGL +TVKL +VNRQATVSVIP++SSL++KALNEP RDRKKVKH+ HDGN+TLDQVID+AR MRERSMART+ GTVKE+LGTC S+GCTVNG+ P+ +Q  I++GE+ I +E
Sbjct:   22 MGPPPPAGEEKVVIMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKAATMDWKGLAVTVKLVVVNRQATVSVIPSSSSLVMKALNEPPRDRKKVKHVVHDGNITLDQVIDVARIMRERSMARTMGGTVKEILGTCVSIGCTVNGEHPKTLQQQITDGELEIADE 186
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A7S1E7R7_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E7R7_9STRA)

HSP 1 Score: 251 bits (642), Expect = 6.640e-80
Identity = 118/165 (71.52%), Postives = 148/165 (89.70%), Query Frame = 2 
Query:   41 TMGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPE 535
            TMGPPP + + + VI+R +GGE+G+ ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT+VNRQATVS+IP+ASSL++KALNEP RDRKKVK++KHDGN+ LDQ+I+IAR MRERSMA+ LAGTVKE+LGTCNS+GCTVNG+SPRD+Q  I +GE+ IPE
Sbjct:   15 TMGPPP-SDDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVKHDGNIALDQIIEIARQMRERSMAKKLAGTVKEILGTCNSIGCTVNGESPRDLQQMIDDGEVEIPE 178
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A7S3PV60_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV60_9STRA)

HSP 1 Score: 251 bits (640), Expect = 8.020e-80
Identity = 121/165 (73.33%), Postives = 147/165 (89.09%), Query Frame = 2 
Query:   44 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            MGPPP + E + VI+R +GGEV   ++LAPK+GPLGLSPKK+GEDIQK T++WKGL +TVKLT+VNRQATV++IP++SSLI+KALNEP RDRKKVK++ HDGN+TLDQVI+IARAMR+RS A+ L+GTVKEMLGTCNS+GCTVNG SPRDVQAGI +GEI IP E
Sbjct:    1 MGPPP-SDEVKIVIMRTVGGEVAAASSLAPKIGPLGLSPKKVGEDIQKATKDWKGLSVTVKLTVVNRQATVTMIPSSSSLIMKALNEPVRDRKKVKNVTHDGNLTLDQVIEIARAMRDRSCAKELSGTVKEMLGTCNSIGCTVNGDSPRDVQAGIDDGEIEIPAE 164
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A7S1XKH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH5_9STRA)

HSP 1 Score: 250 bits (638), Expect = 4.270e-79
Identity = 118/161 (73.29%), Postives = 144/161 (89.44%), Query Frame = 2 
Query:   56 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            PP GE + V++RAIGGEVG+ A+LAPKLGPLGLSPKK+GEDI+K T +WKGL +TVKL +VNRQATVSVIP+ASSL++KALNEP RDRKKVKH+ HDGN+TLDQVID+AR MRERSMAR L+GTVKE+LGTC S+GC+VNG++PR +Q  I++GE+ IPEE
Sbjct:   33 PPAGEEKIVVMRAIGGEVGSAASLAPKLGPLGLSPKKVGEDIKKATMDWKGLSVTVKLVVVNRQATVSVIPSASSLVMKALNEPVRDRKKVKHVVHDGNITLDQVIDVARVMRERSMARELSGTVKEILGTCVSIGCSVNGENPRTLQQQITDGELEIPEE 193
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: K0TFA0_THAOC (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=K0TFA0_THAOC)

HSP 1 Score: 246 bits (629), Expect = 3.680e-78
Identity = 116/161 (72.05%), Postives = 145/161 (90.06%), Query Frame = 2 
Query:   56 PPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            PP+ + + VI+R +GGEV   +ALAPK+GPLGLSPKK+GEDI K T++WKGL +TVKLT+VNRQA+VS+IP++SSLI+KALNEP RDRKKVK+I H+GN+TLDQVIDIA+ MRERSMA+ L+GTVKE+LGTCNS+GCTVNG+SPRD+QAGI +GE+ IPEE
Sbjct:    4 PPSDDVKIVIMRTVGGEVAPASALAPKIGPLGLSPKKVGEDIMKATKDWKGLNVTVKLTVVNRQASVSMIPSSSSLIMKALNEPYRDRKKVKNIVHNGNLTLDQVIDIAKQMRERSMAKKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEE 164
[Close]
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Match: A0A7S1BV82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BV82_9STRA)

HSP 1 Score: 244 bits (622), Expect = 4.200e-77
Identity = 117/165 (70.91%), Postives = 146/165 (88.48%), Query Frame = 2 
Query:   44 MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNTQEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKHDGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRDVQAGISEGEIVIPEE 538
            MGPPP + + + VI+R +GGEVG  ++LAPK+GPLGLSPKK+GEDIQK T +WKGL +TVKLT+VNRQATVS+IP+ASSL++KALNEP RDRKK K+I H+GN+TLDQVIDIAR MRERSMA+ L+GTVKE+LGT NS+GCTVNG++PRDVQ+ I +GE+ IP+E
Sbjct:    1 MGPPP-SDDVKIVIMRTVGGEVGAASSLAPKIGPLGLSPKKVGEDIQKATLDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKEKNIVHNGNITLDQVIDIARQMRERSMAKELSGTVKEILGTANSIGCTVNGENPRDVQSAIDDGEVEIPDE 164
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91.17175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPM0_ECTSI1.500e-10595.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTI9_9STRA1.360e-9184.85Ribosomal protein L11 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2UAZ7_9STRA1.080e-8273.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8BTS3_THAPS2.820e-8073.29RL12, ribosomal protein 11 60S large ribosomal sub... [more]
A0A7R9U1B9_9STRA2.960e-8072.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1E7R7_9STRA6.640e-8071.52Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3PV60_9STRA8.020e-8073.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1XKH5_9STRA4.270e-7973.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K0TFA0_THAOC3.680e-7872.05Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A7S1BV82_9STRA4.200e-7770.91Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91contigS-dermatodea_contig91:29642..33361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.6
Seed ortholog evalue6.8e-84
Seed eggNOG ortholog2880.D7FPM0
Preferred namerpl12
KEGG koko:K02870
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000381,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0015934,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0080@1,KOG0886@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog description60S ribosomal protein L12
Ec32 orthologEc-16_001460.1
Exons5
Model size1131
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925386.1973975-UTR-S-dermatodea_contig91:29641..296841622925386.1973975-UTR-S-dermatodea_contig91:29641..29684Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91 29642..29684 +
1694079898.43061-UTR-S-dermatodea_contig91:29641..296841694079898.43061-UTR-S-dermatodea_contig91:29641..29684Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91 29642..29684 +
1622925386.2656558-UTR-S-dermatodea_contig91:32771..333611622925386.2656558-UTR-S-dermatodea_contig91:32771..33361Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91 32772..33361 +
1694079898.4978707-UTR-S-dermatodea_contig91:32771..333611694079898.4978707-UTR-S-dermatodea_contig91:32771..33361Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91 32772..33361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925386.2112734-CDS-S-dermatodea_contig91:29684..297061622925386.2112734-CDS-S-dermatodea_contig91:29684..29706Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 29685..29706 +
1694079898.44409-CDS-S-dermatodea_contig91:29684..297061694079898.44409-CDS-S-dermatodea_contig91:29684..29706Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 29685..29706 +
1622925386.2211354-CDS-S-dermatodea_contig91:30739..309211622925386.2211354-CDS-S-dermatodea_contig91:30739..30921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 30740..30921 +
1694079898.4549923-CDS-S-dermatodea_contig91:30739..309211694079898.4549923-CDS-S-dermatodea_contig91:30739..30921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 30740..30921 +
1622925386.2302933-CDS-S-dermatodea_contig91:31729..318071622925386.2302933-CDS-S-dermatodea_contig91:31729..31807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 31730..31807 +
1694079898.4656065-CDS-S-dermatodea_contig91:31729..318071694079898.4656065-CDS-S-dermatodea_contig91:31729..31807Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 31730..31807 +
1622925386.2419755-CDS-S-dermatodea_contig91:32208..323821622925386.2419755-CDS-S-dermatodea_contig91:32208..32382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 32209..32382 +
1694079898.4766653-CDS-S-dermatodea_contig91:32208..323821694079898.4766653-CDS-S-dermatodea_contig91:32208..32382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 32209..32382 +
1622925386.2520626-CDS-S-dermatodea_contig91:32729..327711622925386.2520626-CDS-S-dermatodea_contig91:32729..32771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 32730..32771 +
1694079898.4873943-CDS-S-dermatodea_contig91:32729..327711694079898.4873943-CDS-S-dermatodea_contig91:32729..32771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 32730..32771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91.17175.1prot_S-dermatodea_contig91.17175.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91 29685..32771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91.17175.1

>prot_S-dermatodea_contig91.17175.1 ID=prot_S-dermatodea_contig91.17175.1|Name=mRNA_S-dermatodea_contig91.17175.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=166bp
MGPPPPTGEAQYVILRAIGGEVGNTAALAPKLGPLGLSPKKIGEDIQKNT
QEWKGLPITVKLTIVNRQATVSVIPAASSLILKALNEPERDRKKVKHIKH
DGNVTLDQVIDIARAMRERSMARTLAGTVKEMLGTCNSVGCTVNGQSPRD
VQAGISEGEIVIPEE*
back to top

mRNA from alignment at S-dermatodea_contig91:29642..33361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91.17175.1 ID=mRNA_S-dermatodea_contig91.17175.1|Name=mRNA_S-dermatodea_contig91.17175.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3720bp|location=Sequence derived from alignment at S-dermatodea_contig91:29642..33361+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACCTCTGCCATCCCTCGCGGGACGATCCATCCTCTATAAACAATGGGCC
CCCCTCCGCCGACTGGTGAGTGAGCACGCCTAGGAGATGAAAAGGCTTTG
GAAGTTGTTGTCTAACTTATTATCGATTGGTAGGCAGGGGCAATTTGTGG
GTGGCAGGCGATAGTTTGAACCCTTGCCGTCGTCGAGCCATCGATCGTCT
CTGTGCTGGGGAGGGTGGTACGTGCAGTTGCGAGGGCAGGTTGTGGTCAA
TGTGTGTTAAGGTTAAGTATTTTCTTGCCTCACTCAGCACTGTGGGCGGG
GTTGTTCTCGACGCTAAAACAAACGGAAGCACGAAGCAATCAGAATGCAT
CCACGATCTGTGTTTGGTGTTTTGCCTCCACTGAAAGTCTGCATGCATGC
TGCTGTCCATGCGCTCGGTGCCCCTGCCGATGCCACATTAGATCGCTGGT
CCACTTATCACTCTTTCTGGTTGCGTTTGCTGGGTGTGGTTTAGCCTTTT
GATCGCACGGTGATCGAGATTTTGCTCGAATAGTTATATTGCTATAGTAG
TGAAATATTGTGGCTGCTGTTGTCGCAAGACAATTTCACGTTAGGCGTAA
AAGAAAGACGGGCTTCAAAGAGCGATCTGTCGTACACCGATTGACTGGTT
TCTGATTTAGGGACAGCAGATTATCATACTTGAACAAGTAACACAACTGC
AGTATTTTGCATACTTGGATTCCCGAAAGTTTGGCGAGGTCGGTCATCGC
CATCATATGATATGATCGCCGTAGAAGAGACTGTTGGTCGCGTCACATCC
GCCGAAAATCGTGATGTTGTACAAGTAAAATTTTGCGGCAATTTCAAGCA
CAGCGAACCAGGCTAATGACGTGTCCCGCGTTGAAGGCGGTATTACTAGA
GAGTTCTCACCATGTGTGCCCTCCAAGAACATCGCATGCCGTAGTCTGGT
GAGACACCGGTATGGGCATTTACTCCTGGTCGCACCGTCACGTTTGCATA
TCTCGAGCAACATCTCCAATCTCGCAACAAGCACTTCGCAAGTATTAAGA
TCTGATGAACATAACCCCTCCATGGTCTTGGAAACCCACAAATGGCAGGC
GAGGCGCAGTACGTGATCCTTCGGGCGATCGGGGGTGAGGTAGGAAACAC
GGCCGCTCTGGCCCCCAAGCTGGGTCCTCTGGGTCTCTCGCCTAAGAAGA
TCGGTGAGGACATCCAGAAGAACACCCAGGAGTGGAAGGGGCTCCCCATC
ACCGTAAAGCTGACCATCGTCAACCGTCAGGTATTTTTTGCAACCTTCAA
CACGTGGTGTCTGATTGGAAAGAGCCCGCGTGGCACGGTACAGCCACCTC
ACGTGTGTAAGCCAAGCCATATAGAGCTTTATGTTTACCTCGTCCATAAC
CTGAACTCAAGGGGACACGGAAGAGTGCTTCTGTGGAGACCTTGTTTACA
ACTCTGTGCAATGTTTTCCTGAGAAGTTGGCACTTCCAACCAAGCTTACA
GGAAACTACTGCAGCCCGCATGCAACCCCGGCCGTGCGTTAATCTCGTGC
GCGGTCGGGTGTTGCAGTAATTTTCATTACGCGTGGCGAGAGGCAATCCG
GGGGGGACGCCTAACATTCGTTCGTCTGGCTCCCCCGGCCGGGCTTGGCC
GTACCAGACTCAACTAACTGTCTGAATGCGGAATGTACCTGGCCAACATT
TGATTACCCTTGAGCAATTTTTTTCGCGCACTCTTGCGCCGGTGGCGTAC
AAGTAGTGATTCTAAATGTCCCTGTGACTGTTGCATGTTCATTCTTGCGG
TGCGAACGCTGGGTGGTGCGGTACTGTTCGTGTCTCAGCGATCAAAGCGT
CTCTCGATGACACCCAGGAACCTCAAGTGAGAGTCACGATTAAACCGCCT
GTCTGTTGCTGTACTTTCAAGCAAGACGCCGATACGCCTCCAATAGCGTC
GAAGCCTCAGCACATGCCGAACGTGCTCATTCGGCCAGTATGTTGCACGA
CGACCCTTCTCTTCCCCACCCCTCGCCTGAACGCCCTCGTCTATCTTTTC
GCGTCGTTTGCGGTCGTGGCCGTTTTTCTTTCGCCCAGGCGACCGTGTCG
GTGATCCCCGCCGCTTCGTCGCTGATTCTCAAGGCTCTCAACGAGCCCGA
GCGCGACCGCAAGAAGGTGAACGCCGTTATATTTCGTGTCGCCGGCTATG
CATGGACAAGTAGGCGTGTTTGCAAGCGTCGGGAAAGGCCCAGCCGAGTC
TCATTTTTGGCAAGCCCTGAAAGGAATTTTTGAGATGAGTGCCGTCGGTA
TCATTTCGTGCGGCGACCAGTCCACAGCTTATTGAACACGGAAGTGTGTT
TTTGTTATACCTCTGTTTACCCCCCCTTGTGAATTAAGCCCCTTCTATGC
TCGACGTATGGACCGAAACAGTTTATTTGCTGTTCTGACTTGTGGGGCGC
CCGCCAATCCATGAATGTAGATCCGCGAGAGAATATTACATTACAAGTCC
CACCATCGATTGCTACTGTTGGAAGCGCTGTCTAAAATACACTTTTCTGG
CTCAATGGCTGCAACAGGTGAAGCACATCAAGCACGACGGCAACGTCACC
CTGGACCAGGTGATCGACATCGCCCGGGCTATGCGCGAGCGCTCCATGGC
GCGCACGCTGGCCGGCACCGTGAAGGAGATGCTGGGCACCTGTAACTCGG
TGGGCTGCACCGTAAACGGGCAGTCCCCCCGCGACGTCCAGGTGGGCTTC
ACATTTTATATCGCACGGGATTCCTTGTGTCAGTGCAGCTGTTGGCAGTC
CGAAGGTTTATGGAACGGTCACCTTTGTGGTTTCAAGTTGATGTCGAATG
AGCAATAATGTATGCGGTGGTTTTCGGCCGAATCTCTATGTTGCTGCTCT
TTGTTGTCCAATCGTGTTGCACACTCTAGGATAAATGCTCATTTTCCCTT
TCCCCCCCCTCCGCTCCACCCGTGCTTGTTTTCCCTGCCCCTTTCCCCTC
GTTTAATTCTGCATCGGTTGGATGTGTTGTCTCGCATCTGGACAATGCTG
GGATCGGCGGCTTGATCGCTCAACTCTGACATGATCAGGCCGGCATCTCC
GAGGGCGAGATCGTCATCCCCGAGGAATAGGCGCGTTAGCAGAGCACTCG
TGGTGATAGGATAAGGCGATGGCGAGAGGAGCGTCTTATCTCGCTTCGGC
AATCTTGTTGATGGAGTAAAACCACCAGAGCATAAAAAAACAAAAACAAA
ATTGTTGGGACGGAGGAACCATGACGCTTGCTGCCATGCCCTTTACTATA
CTGCTGTATGCACAGTGGTAGTCCACACACCATTATGGACCTCTGGTACA
CTGTATGCATGATCCACTCAACGTCGTGCTGGGTGGGCCCTAGGCATGGG
CGATTCAGCTTGATACCATCAAAAATCGCATGATGCTCGTTCGGCACGTG
ACTTTGCACTTTCTCGATTGTGAGTGCGCACTCTGCTCGTATCAAAAGCT
CTTATACTGCAGCAAAAAAATGTGCCTGCTCCCTATACTTCTATAATTAC
CATGGGAGCGAGCCGGCGCACGATCTCCAAGGAATGGGCGGCAAGTCAAT
CCAACAAATCAGAGGCGGGCACATGTTCCATGACATCGATAACTGGCCCA
TCGCAGAGATTGAAACAACCATGACAGCCACGGCCTCTCGGATTATGTCC
CATGGGTATCAGCACAGGAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig91:29642..33361+

>mRNA_S-dermatodea_contig91.17175.1 ID=mRNA_S-dermatodea_contig91.17175.1|Name=mRNA_S-dermatodea_contig91.17175.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at S-dermatodea_contig91:29642..33361+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCCCCCCTCCGCCGACTGATGGGCCCCCCTCCGCCGACTGGCGAGG
CGCAGTACGTGATCCTTCGGGCGATCGGGGGTGAGGTAGGAAACACGGCC
GCTCTGGCCCCCAAGCTGGGTCCTCTGGGTCTCTCGCCTAAGAAGATCGG
TGAGGACATCCAGAAGAACACCCAGGAGTGGAAGGGGCTCCCCATCACCG
TAAAGCTGACCATCGTCAACCGTCAGGCGAGGCGCAGTACGTGATCCTTC
GGGCGATCGGGGGTGAGGTAGGAAACACGGCCGCTCTGGCCCCCAAGCTG
GGTCCTCTGGGTCTCTCGCCTAAGAAGATCGGTGAGGACATCCAGAAGAA
CACCCAGGAGTGGAAGGGGCTCCCCATCACCGTAAAGCTGACCATCGTCA
ACCGTCAGGCGACCGTGTCGGTGATCCCCGCCGCTTCGTCGCTGATTCTC
AAGGCTCTCAACGAGCCCGAGCGCGACCGCAAGAAGGCGACCGTGTCGGT
GATCCCCGCCGCTTCGTCGCTGATTCTCAAGGCTCTCAACGAGCCCGAGC
GCGACCGCAAGAAGGTGAAGCACATCAAGCACGACGGCAACGTCACCCTG
GACCAGGTGATCGACATCGCCCGGGCTATGCGCGAGCGCTCCATGGCGCG
CACGCTGGCCGGCACCGTGAAGGAGATGCTGGGCACCTGTAACTCGGTGG
GCTGCACCGTAAACGGGCAGTCCCCCCGCGACGTCCAGGTGAAGCACATC
AAGCACGACGGCAACGTCACCCTGGACCAGGTGATCGACATCGCCCGGGC
TATGCGCGAGCGCTCCATGGCGCGCACGCTGGCCGGCACCGTGAAGGAGA
TGCTGGGCACCTGTAACTCGGTGGGCTGCACCGTAAACGGGCAGTCCCCC
CGCGACGTCCAGGCCGGCATCTCCGAGGGCGAGATCGTCATCCCCGAGGA
ATAGGCCGGCATCTCCGAGGGCGAGATCGTCATCCCCGAGGAATAG
back to top