mRNA_S-dermatodea_contig91.17174.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91.17174.1
Unique NamemRNA_S-dermatodea_contig91.17174.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91.17174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91contigS-dermatodea_contig91:24819..25156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size339
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.8269482-UTR-S-dermatodea_contig91:24818..248291622925385.8269482-UTR-S-dermatodea_contig91:24818..24829Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91 24819..24829 +
1694079898.1987343-UTR-S-dermatodea_contig91:24818..248291694079898.1987343-UTR-S-dermatodea_contig91:24818..24829Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig91 24819..24829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.8434565-CDS-S-dermatodea_contig91:24829..251561622925385.8434565-CDS-S-dermatodea_contig91:24829..25156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 24830..25156 +
1694079898.208373-CDS-S-dermatodea_contig91:24829..251561694079898.208373-CDS-S-dermatodea_contig91:24829..25156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 24830..25156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91.17174.1prot_S-dermatodea_contig91.17174.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91 24830..25156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91.17174.1

>prot_S-dermatodea_contig91.17174.1 ID=prot_S-dermatodea_contig91.17174.1|Name=mRNA_S-dermatodea_contig91.17174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MASASISCVARRTIMLSPATICFVWRTRWSGGSSLARGTLRAPVRCRFVK
FQGRNVDVCNSAGCRARRTPTQDTQGFAHQIQLLRASGDGSRWLSNQMHL
GRGSVNGRK
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mRNA from alignment at S-dermatodea_contig91:24819..25156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91.17174.1 ID=mRNA_S-dermatodea_contig91.17174.1|Name=mRNA_S-dermatodea_contig91.17174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=338bp|location=Sequence derived from alignment at S-dermatodea_contig91:24819..25156+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCAACGCGCATGGCCTCAGCCAGCATATCCTGTGTTGCAAGGCGGACA
ATCATGTTATCTCCGGCGACAATATGCTTCGTGTGGCGAACCAGGTGGAG
CGGCGGGTCGTCGCTCGCTAGGGGTACCCTCCGGGCGCCTGTTCGCTGCA
GATTTGTCAAGTTCCAAGGGCGAAACGTCGATGTATGTAACAGCGCAGGG
TGCCGCGCGAGGCGCACACCAACCCAAGACACGCAAGGCTTTGCTCATCA
AATACAGCTGCTGCGTGCGAGCGGCGATGGTAGCCGCTGGCTGAGCAACC
AAATGCACCTCGGACGGGGCAGCGTCAACGGTAGGAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig91:24819..25156+

>mRNA_S-dermatodea_contig91.17174.1 ID=mRNA_S-dermatodea_contig91.17174.1|Name=mRNA_S-dermatodea_contig91.17174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig91:24819..25156+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCTCAGCCAGCATATCCTGTGTTGCAAGGCGGACAATCATGTTATC
TCCGGCGACAATATGCTTCGTGTGGCGAACCAGGTGGAGCGGCGGGTCGT
CGCTCGCTAGGGGTACCCTCCGGGCGCCTGTTCGCTGCAGATTTGTCAAG
TTCCAAGGGCGAAACGTCGATGTATGTAACAGCGCAGGGTGCCGCGCGAG
GCGCACACCAACCCAAGACACGCAAGGCTTTGCTCATCAAATACAGCTGC
TGCGTGCGAGCGGCGATGGTAGCCGCTGGCTGAGCAACCAAATGCACCTC
GGACGGGGCAGCGTCAACGGTAGGAAAATGGCCTCAGCCAGCATATCCTG
TGTTGCAAGGCGGACAATCATGTTATCTCCGGCGACAATATGCTTCGTGT
GGCGAACCAGGTGGAGCGGCGGGTCGTCGCTCGCTAGGGGTACCCTCCGG
GCGCCTGTTCGCTGCAGATTTGTCAAGTTCCAAGGGCGAAACGTCGATGT
ATGTAACAGCGCAGGGTGCCGCGCGAGGCGCACACCAACCCAAGACACGC
AAGGCTTTGCTCATCAAATACAGCTGCTGCGTGCGAGCGGCGATGGTAGC
CGCTGGCTGAGCAACCAAATGCACCTCGGACGGGGCAGCGTCAACGGTAG
GAAA
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