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Homology
BLAST of mRNA_S-dermatodea_contig909.17169.1 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI) HSP 1 Score: 268 bits (684), Expect = 1.240e-78 Identity = 150/266 (56.39%), Postives = 189/266 (71.05%), Query Frame = 3
Query: 21 VAGMWDSDASDSSSGHTDNETDMDQSESSDMDLCYDSCCDQPRVTKQPRFPGRPDPDSVVTDSDSSTDVEQPCL---DKLERRGSLEASGPAFYGVWKRTSCEGYEELLRSSGVPRRAAAVALAKHPVHIIDHDGAYFRLIVKNGLSKVDDTFFIGEQ-RVDKIGKENYDVCLNWAHISGTGTKDELTLTSVCRERGEEVIAIRSLEDGGNRMVLTQIVRRPAKQYEVKAKHFFKRVTDKAELRS-------TRRGPTSNVVTVRQ 785
+A +W+S++S+SS GHTD ETD ++ D D CC SV S T+ PC+ +L R + EA PAFYGVWKRTS EGYEELL SSGVP+RA A+A+ KHPVHIIDHDG+YFRLIVKNGLSKVD+TFFIG++ + D IGK++Y+V +NWAH+SG G +DEL LTS+C + GEEVIAIRSL +GG++MVLTQIVRRPA+ YEV+AKHFFKRVT K+ELRS ++G +S +VTVR+
Sbjct: 193 LAKLWESESSESSEGHTDLETDDTET---DWHSDADDCC------------------SVG----SGTEEAPPCVVEQQQLRRGSNSEAGSPAFYGVWKRTSSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGEEVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKRVTSKSELRSGGKQQHKQQKGLSSTIVTVRR 433
BLAST of mRNA_S-dermatodea_contig909.17169.1 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA) HSP 1 Score: 142 bits (358), Expect = 4.550e-32 Identity = 86/206 (41.75%), Postives = 114/206 (55.34%), Query Frame = 3
Query: 225 VEQPCLDKLERRGSLEASGPAFYGVWKRTSCEGYEELLRSSGVPRRAAAVALAKHPVHIIDHDGAYFRLIVKNGLSKVDDTFFIGEQ-RVDKIGKENYDVCLNWAHISGTGTKDELTLTSV---CRERGE------------------------------------EVIAIRSLEDGGNRMVLTQIVRRPAKQYEVKAKHFFKRVT 722
V Q + LERR +L P F G+WKR+ EG+ ELL SGVPR+AA A K PVHIIDHD YFRLI+KNGL K D + IG++ R++K G +Y+V L+W H + G + L LTS+ + G E+IA+R+LEDGG+ +VL QIVR+PA E +A+H FKR+T
Sbjct: 186 VRQKRMISLERRRALR---PNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRIT 388
BLAST of mRNA_S-dermatodea_contig909.17169.1 vs. uniprot
Match: A0A836CAN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN9_9STRA) HSP 1 Score: 114 bits (284), Expect = 7.930e-24 Identity = 71/160 (44.38%), Postives = 90/160 (56.25%), Query Frame = 3
Query: 246 KLERRGSLEASGPAFYGVWKRTSCEGYEELLRSSGVPRRAAAVALAKHPVHIIDHDGAYFRLIVKNGLSKVDDTFFIGEQRVDKIGKENYDVCLNWAHISGTGTKDELTLTSVCRERGEEVIAIRSLEDGGNRMVLTQIVRRPAKQYEVKAKHFFKRVTD 725
+L RR + A+ P F GVWKR EG+ ELL SGVPR+AA A + VHIIDHD YFRLIVKNGL+KVD + I + + A + E+IA+R+LEDGG +VL QIVRRPA E +A+H FKR+T+
Sbjct: 118 ELRRRAA--AARPDFSGVWKRARVEGFIELLAFSGVPRKAALSAAQRRAVHIIDHDDDYFRLIVKNGLTKVDGHYIIEKLKFXXXXXXXXXXXXIAAAAAPL-----------------EMIAVRTLEDGGATLVLQQIVRRPATGEEARARHIFKRLTE 258
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Calycin |
| Ec32 ortholog | Ec-12_001340.1 |
| Exons | 2 |
| Model size | 2182 |
| Cds size | 777 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig909.17169.1 >prot_S-dermatodea_contig909.17169.1 ID=prot_S-dermatodea_contig909.17169.1|Name=mRNA_S-dermatodea_contig909.17169.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp
MWDSDASDSSSGHTDNETDMDQSESSDMDLCYDSCCDQPRVTKQPRFPGR PDPDSVVTDSDSSTDVEQPCLDKLERRGSLEASGPAFYGVWKRTSCEGYE ELLRSSGVPRRAAAVALAKHPVHIIDHDGAYFRLIVKNGLSKVDDTFFIG EQRVDKIGKENYDVCLNWAHISGTGTKDELTLTSVCRERGEEVIAIRSLE DGGNRMVLTQIVRRPAKQYEVKAKHFFKRVTDKAELRSTRRGPTSNVVTV RQPRNRAC* back to topmRNA from alignment at S-dermatodea_contig909:8129..12486- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig909.17169.1 ID=mRNA_S-dermatodea_contig909.17169.1|Name=mRNA_S-dermatodea_contig909.17169.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4358bp|location=Sequence derived from alignment at S-dermatodea_contig909:8129..12486- (Saccorhiza dermatodea SderLu1190fm monoicous) GCTCGGAGCACAAGGCACCGGTCGCGGGCATGTGGGACTCCGACGCCTCC
GACAGCAGCTCCGGCCACACGGACAATGAGACAGACATGGACCAGTCCGA
GTCTTCGGACATGGATTTGTGCTATGACTCGTGCTGTGACCAGCCGCGTG
TGACTAAGCAGCCGCGCTTCCCGGGTCGCCCTGACCCTGACAGCGTGGTG
ACGGATTCGGACTCTTCGACGGACGTGGAGCAGCCATGCCTCGACAAGCT
CGAGCGCCGGGGAAGTTTGGAGGCGTCAGGCCCTGCTTTCTACGGCGTGT
GGAAGCGCACGAGCTGTGAGGGCTACGAGGAGCTGCTGCGATCATCCGGC
GTGCCGAGGAGGGCCGCGGCGGTCGCGCTGGCCAAGCACCCTGTCCACAT
CATCGACCACGATGGGGCCTACTTCCGTCTCATCGTGAAGAACGGCTTGT
CCAAAGTCGACGACACCTTCTTCATCGGCGAACAGAGGGTGGTGAGTGGC
AAGAGACGACGCTGTAGTAGCGTCACGCCGAGCGTGGCAGCCTGCGTACT
GCTATCTGCCGCTGTATTGCACGCTTTTCCCCCTCGCTCGCTTGATCGTG
CGCGCTCGCTTCGCTTGTCCGTTTGGGTTTGATTTGTGTCCTCTTTTGAC
TAGATTTTTTCTCACGTGGGTATATTTACTTGTATACAGCACAGAGACCT
CTATTCTGCCATTTTTTGTTGCTCCGTCTCAAAGTGTTCCTTTGTTTCAC
CGATTTGCCTTTTCCGAGTACAGCAGTATCATATGATAGTATCATGATAT
GGGAACGGGCATGTGTGTTGTACAGTATATCCTGCCAGAAACCCAAGCCG
ACGTCCTTGCCAGCGTCTCTGTTTGCGTGGGCGGCTCCGATGTGCAGTAG
CTCGTTTTCTATGCTCCTCCGGCCTTGGGGATATCGGCTACGCTCGACGT
TGCGAGGCCCTGTTTCAATTTCAACTCTCTTCAAACTTTCGATGGACGAG
GTCCCGCGCACCGCATCTTGAAAACAAAGCCTTCTGTTTGCTGTTTGGTG
GGCAGGTACTGCTGTAAAACAAAACTCAAACTCACGCCAGCACTTGATTG
TTTTCATCTGTCTCTCGTCGTTTTAGCATACTATCCATATATATGAGAGA
GGCTTCGGCGGAGAATGAGAAGTTGACGTGGCCTCTTACATTACCCGCCG
CCTCCACCGCGGTTCATGCTTAGCTCTGCGATATGAGTTGTTACACTCAC
GTGCAGTAAGAACTTCCAAGGACCAGTATGAAATACGAAACGAAGACCTC
GGCTTCAAAAGCAATCCGGTCTGTTCGGATAATTCTACACTCTTGGAGGC
CCCAAGTACGTTGTCTTCGCGTGCTGTTCCACAACGCTTCGGCCGTACAG
ACGTTTGGCAAGCATGCAATCTATGTAGTGATGTGATAACAGCTGTAGCT
GTCGTTGGTTCGATTCACTTTTCTGTACCGCTGCTTTGGTTGTGTCGTTA
TCTGTGTGGTTGTTCTGGGTCGTCCGCTTTGTAAAACGTACTTGTACGTC
CACTGCATGCCGAAAGCAGCCAAGTGTTCGTTGGGATGTATTGACACTAC
TGACAGCAGTTCGACCGAGACTTTTGAGAGAGTTGTATTATTTATGATAG
GTTAACTTGGCCTTCACATTTAATGATACTCACTCTGTACAGCAGTGCTG
CCTTTCCTCGTGTTGAGATGGCGTGTGGTCTTCACTATGATAGCGTGAGG
TGTCAAGCTGACGCGGACTGAGGAGCGGTTGCAAGTACCATATCAGGTGC
CATTTTTCGGTTCCATAGTGCAGAGCTCGATCAAAGCGTGTGCAGTGTTG
GATCAGTTTATGTTCTTCTATGCACATATTTGAACGCATGCTTTTGTAAT
TAACCCGTTCTTCGGTTTATTTCACTCTTTGCTGGGTAGTAATAAAAGCA
GTATAATCTGAGGTGCAAAAAGGCTGTTCAAGTTTACCCAAGGATCAGTA
CGGGTAGTGCCCGAAACAAGCCCAACGGCCACACATGAGGCACGAGGGGA
AGAGTGGTGTATCATACCTACAATGATGAGGAGAGTGACCGTACACCTGA
AAGCGCAACTGAGTGTTGTACCCCCGTGATTCCCCGCGTATTTCCATTAA
AGCCTCCACAACCGGGGCGTTGTATGTATACACACTAGTCCACCTGTACA
CTTATAGTCCCCCCCAGCACATATGCCTTACTGAGAGAGTAAAGGNNNNN
NNNNNCAGTTTCCCCTGAACCAGTGTGCTTGAGAGTTAGGGATGTACATG
GGAACTAGATTTTGTTTTTTATAAACCGGGGCGTGCCCAAATGCAGTTTC
GCTTTCCGGGATCGCGGGCAGGGAGCCGTTTGCTGGCACCTTTGCCTCCT
GTCGGCCGAAGTCGTCGAAGGGAAGAACCTTTTTTCTAGTTATATATATT
CCATGCCTGTGATACATATGAAAACTAGACGTTACGCTTTTCGACGATGA
AAGAAGGTTCCTACGCCGCCATCAGCTGCTGCGCGCATGGCTCGGGAGAA
CGCCGCGTCGCTTGAGCTGGCTCGCATCCGTCTTGTCCTGTCCGCTATTC
TCTCAGAGGCATCGTATCACATCTCCTCTTACCTTACATTTATGTTTGAT
TTTGAACATGCTCGCAGGACAAAATTGGCAAGGAGAACTACGATGTTTGC
CTCAACTGGGCGCACATCTCGGGCACAGGGACGAAGGATGAGCTCACGCT
CACCAGTGTCTGCCGCGAGAGGGGCGAGGAGGTCATCGCGATTCGGTCGC
TCGAGGACGGCGGCAACCGCATGGTGCTCACCCAGATCGTGCGCCGGCCG
GCGAAGCAGTACGAAGTTAAAGCGAAGCACTTCTTCAAGCGCGTCACGGA
CAAGGCAGAGCTGCGCAGCACCCGGAGGGGGCCGACCTCGAACGTGGTGA
CGGTACGGCAGCCCAGAAACAGGGCGTGCTGACGCCGCTCCCACTCCCTA
GTGGATTGACGGATTAACTCTAGTAGTATGATAGTGGTGGTGTGGTAGCG
CGAAACGAGGTGTTTCTTGTCTTCGTTCTCGTTACTCGGTTCGATCGTTA
TGTACTTTTATGGCTGCGGCCGGTCGCTGGGTTATCTCGGCCATAGAGGT
GTTTGTTTTTTTCTCAGATGAGGGGTGGTCACGAGCGTCACGCAACAATG
TTGGCGATGCGATGTGAAGTAAAATAAATAGCAGTTGGCCGCTCTGCGTA
GTGTGTGCTTGACGCGTACAAGCTTTGGCGTTGTTCGCGAACGAGAATAA
TTTAGTTGGCAAGAACCGAAATTTTGCTCGGCTTGGAAGGCCTTCGCACT
GGCGGAGACGCTATGTACAGATTCAGACACCACGAGCCGGCGCTGCTGCT
TGCAAAGCGCGTTTAGAGGATTGTGCTGTGTTGTGTATGGTTAGGTTTGG
CTGTTCCGTTTCACGACGAATCAGTACCCGATAAATGTGTCGTATCCTAA
AGCAGTGGGTTTTTTTAGTTGCTTCCTGCTCTTTTGTTCAGCGATATAAA
CGTGAAGTTGACGGTTTTATTCACCGTCTTGGACGAAAGGCTCACGGGAT
GCGGAGCGCGTCCATTTTGAGCTGCTATCTCGCCCGCGTTGGGCGTTGAG
TTGTGGGGGTGGTGCGCACTCGGATTGTCGCTGGCTCGGCGAGGCACAGT
CCGAAGAGTTTGTCGTTGTAGGAGGCGGTGACTCGTCATGTTTTTTTTTC
CCGAGCCGGTTTTGCAATTCTCCATTGACTTATGATACTATTATTCTTCG
AAGTATATAGTTATCTTGTCTGTCTGTATTTCATGTTTTCTCGCGCGGCA
CCTCAAGACGCGTGGCAATTGGCAATTACTGAAACTCGACAATTTGATGA
GGTCATGGGGTTGGGTTCTGCGTCGGTTGGACGCTTGCAGCAGAATTTTA
GGGTGGTATTTCGGGATTTGGGTTGGAGGGATCCCTTGGGACCTTGTACC
GATATTTTATGATTAATCGTTTGTCGTCCGTTAACAGCACCAGTACATTA
CACATATATACGATATGATAGCTTGTCCTGCAGAAGTCCGAATTTGTTTT
TCATTGTGAGCGTGTTGCAGCCACAGACGGCATGGTGTGGTGTAACTTCT
GCATTTATCTGTCGGACCTGCGCCGGGTTGCATCTGTTGAACGACCTGCG
TAACGCCGTGGCGGTTTTTGGGGGTGATCGTGATCGTGGTGCGTCGTATT
TGGTCGCATTTATTGTGGACTTTAGCTTATCTGCTTACAATACGATTAGA
AGACGGGCAAGAACCATCGTGTCATTGCAACGAACGTTCGTTTCGAACAG
TTTTCCAC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig909:8129..12486- >mRNA_S-dermatodea_contig909.17169.1 ID=mRNA_S-dermatodea_contig909.17169.1|Name=mRNA_S-dermatodea_contig909.17169.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at S-dermatodea_contig909:8129..12486- (Saccorhiza dermatodea SderLu1190fm monoicous) ATGTGGGACTCCGACGCCTCCGACAGCAGCTCCGGCCACACGGACAATGA GACAGACATGGACCAGTCCGAGTCTTCGGACATGGATTTGTGCTATGACT CGTGCTGTGACCAGCCGCGTGTGACTAAGCAGCCGCGCTTCCCGGGTCGC CCTGACCCTGACAGCGTGGTGACGGATTCGGACTCTTCGACGGACGTGGA GCAGCCATGCCTCGACAAGCTCGAGCGCCGGGGAAGTTTGGAGGCGTCAG GCCCTGCTTTCTACGGCGTGTGGAAGCGCACGAGCTGTGAGGGCTACGAG GAGCTGCTGCGATCATCCGGCGTGCCGAGGAGGGCCGCGGCGGTCGCGCT GGCCAAGCACCCTGTCCACATCATCGACCACGATGGGGCCTACTTCCGTC TCATCGTGAAGAACGGCTTGTCCAAAGTCGACGACACCTTCTTCATCGGC GAACAGAGGGTGATGTGGGACTCCGACGCCTCCGACAGCAGCTCCGGCCA CACGGACAATGAGACAGACATGGACCAGTCCGAGTCTTCGGACATGGATT TGTGCTATGACTCGTGCTGTGACCAGCCGCGTGTGACTAAGCAGCCGCGC TTCCCGGGTCGCCCTGACCCTGACAGCGTGGTGACGGATTCGGACTCTTC GACGGACGTGGAGCAGCCATGCCTCGACAAGCTCGAGCGCCGGGGAAGTT TGGAGGCGTCAGGCCCTGCTTTCTACGGCGTGTGGAAGCGCACGAGCTGT GAGGGCTACGAGGAGCTGCTGCGATCATCCGGCGTGCCGAGGAGGGCCGC GGCGGTCGCGCTGGCCAAGCACCCTGTCCACATCATCGACCACGATGGGG CCTACTTCCGTCTCATCGTGAAGAACGGCTTGTCCAAAGTCGACGACACC TTCTTCATCGGCGAACAGAGGGTGGACAAAATTGGCAAGGAGAACTACGA TGTTTGCCTCAACTGGGCGCACATCTCGGGCACAGGGACGAAGGATGAGC TCACGCTCACCAGTGTCTGCCGCGAGAGGGGCGAGGAGGTCATCGCGATT CGGTCGCTCGAGGACGGCGGCAACCGCATGGTGCTCACCCAGATCGTGCG CCGGCCGGCGAAGCAGTACGAAGTTAAAGCGAAGCACTTCTTCAAGCGCG TCACGGACAAGGCAGAGCTGCGCAGCACCCGGAGGGGGCCGACCTCGAAC GTGGTGACGGTACGGCAGCCCAGAAACAGGGCGTGCTGAGACAAAATTGG CAAGGAGAACTACGATGTTTGCCTCAACTGGGCGCACATCTCGGGCACAG GGACGAAGGATGAGCTCACGCTCACCAGTGTCTGCCGCGAGAGGGGCGAG GAGGTCATCGCGATTCGGTCGCTCGAGGACGGCGGCAACCGCATGGTGCT CACCCAGATCGTGCGCCGGCCGGCGAAGCAGTACGAAGTTAAAGCGAAGC ACTTCTTCAAGCGCGTCACGGACAAGGCAGAGCTGCGCAGCACCCGGAGG GGGCCGACCTCGAACGTGGTGACGGTACGGCAGCCCAGAAACAGGGCGTG CTGA back to top
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