mRNA_S-dermatodea_contig9089.17168.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9089.17168.1
Unique NamemRNA_S-dermatodea_contig9089.17168.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9089.17168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9089contigS-dermatodea_contig9089:1396..2390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog2880.D7FJB2
KEGG koko:K07808
KEGG Pathwayko00534,map00534
GOsGO:0001878,GO:0003674,GO:0003824,GO:0006464,GO:0006477,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0008146,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0016740,GO:0016782,GO:0019538,GO:0036211,GO:0042742,GO:0043170,GO:0043207,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050896,GO:0051704,GO:0051707,GO:0051923,GO:0071704,GO:0098542,GO:1901564
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
EC2.8.2.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.539663-CDS-S-dermatodea_contig9089:1395..15251622925385.539663-CDS-S-dermatodea_contig9089:1395..1525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9089 1396..1525 +
1694079898.03502-CDS-S-dermatodea_contig9089:1395..15251694079898.03502-CDS-S-dermatodea_contig9089:1395..1525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9089 1396..1525 +
1622925385.5499976-CDS-S-dermatodea_contig9089:2110..23881622925385.5499976-CDS-S-dermatodea_contig9089:2110..2388Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9089 2111..2388 +
1694079898.0488956-CDS-S-dermatodea_contig9089:2110..23881694079898.0488956-CDS-S-dermatodea_contig9089:2110..2388Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9089 2111..2388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9089.17168.1prot_S-dermatodea_contig9089.17168.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9089 1396..2388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9089.17168.1

>prot_S-dermatodea_contig9089.17168.1 ID=prot_S-dermatodea_contig9089.17168.1|Name=mRNA_S-dermatodea_contig9089.17168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
QPSATSLKARATVSPAAAPADTGGETDAGKEGQAVEKEHKAPVGKTPEYP
PGEFKGVVNSVTAKLAAKKLNPEEIEAARQAAETTVRQALVSGHGLPPAD
VEHAFPESCNVVVEGLPLVGAKQQRCCKAQTTSRDG
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mRNA from alignment at S-dermatodea_contig9089:1396..2390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9089.17168.1 ID=mRNA_S-dermatodea_contig9089.17168.1|Name=mRNA_S-dermatodea_contig9089.17168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at S-dermatodea_contig9089:1396..2390+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCTAGCGCGACATCTCTCAAAGCGCGGGCCACGGTGTCTCCTGCGGC
CGCTCCTGCCGATACCGGCGGCGAAACCGACGCCGGAAAGGAAGGCCAGG
CGGTCGAAAAGGAACACAAAGCTCCTGTGGGTGAGTGCTTAGGGTGTCGA
TACTGCTTCGTGGGCCAGCGGATTGGCGGATGCTCTAGGTTTATCGTTTG
CTTCATGGATTGCTACGTCCGCCCTGTGCGCGTCTATGGAGACCCTGGCG
CTGAGGTACATACCATACATCCCTTTCTATTACAGTAATCCGAAGTGCCT
GTAATCGCGCTCATCGATGACGCTACCTCACCGTCGATGATATCGCGTTG
TGCTGGGGTTACCTGAGGGTGGTGTTGCGATGGCGCGGCGCGTCTTGCCT
TGCTGCCCCACCTCGATGACCCGGCTACCGCGGGACACGTTCGTTTCTTA
CCGAGGGCAGCGATAAAGCTAAATACGTAGGTAAGTGCATCGGACGATAC
CGACACGCCGCCAGGTGGCATCGATGGTGCCGCGGACGCCAACTCTCTCC
CCGCATCTTGCCCGTCGTGTGCTCGCCCCCCTGCCGATGAAAATACATGA
CGGGCCACTCGCTTCGAGCACGCTGGCACGCAGACTTGTGCGTTTTGTCG
TAAAAAGTAATGAAAGACCCCCCCCACCCCTGCCCTCGCGCTTTTCTCTC
TCGCGCCTCGCACAGGGAAGACGCCAGAATACCCCCCCGGCGAGTTCAAA
GGGGTCGTGAACAGCGTCACGGCGAAGCTTGCGGCGAAAAAGCTCAACCC
AGAGGAGATCGAGGCGGCCCGGCAGGCCGCGGAGACGACGGTTCGGCAGG
CGCTGGTCAGCGGTCACGGTCTACCCCCGGCGGATGTAGAGCACGCGTTT
CCCGAGTCGTGCAACGTGGTGGTTGAAGGGCTCCCGCTCGTGGGGGCCAA
GCAGCAGAGGTGCTGCAAGGCGCAGACCACTTCGCGAGACGGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9089:1396..2390+

>mRNA_S-dermatodea_contig9089.17168.1 ID=mRNA_S-dermatodea_contig9089.17168.1|Name=mRNA_S-dermatodea_contig9089.17168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig9089:1396..2390+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCTAGCGCGACATCTCTCAAAGCGCGGGCCACGGTGTCTCCTGCGGC
CGCTCCTGCCGATACCGGCGGCGAAACCGACGCCGGAAAGGAAGGCCAGG
CGGTCGAAAAGGAACACAAAGCTCCTGTGGCAGCCTAGCGCGACATCTCT
CAAAGCGCGGGCCACGGTGTCTCCTGCGGCCGCTCCTGCCGATACCGGCG
GCGAAACCGACGCCGGAAAGGAAGGCCAGGCGGTCGAAAAGGAACACAAA
GCTCCTGTGGGGAAGACGCCAGAATACCCCCCCGGCGAGTTCAAAGGGGT
CGTGAACAGCGTCACGGCGAAGCTTGCGGCGAAAAAGCTCAACCCAGAGG
AGATCGAGGCGGCCCGGCAGGCCGCGGAGACGACGGTTCGGCAGGCGCTG
GTCAGCGGTCACGGTCTACCCCCGGCGGATGTAGAGCACGCGTTTCCCGA
GTCGTGCAACGTGGTGGTTGAAGGGCTCCCGCTCGTGGGGGCCAAGCAGC
AGAGGTGCTGCAAGGCGCAGACCACTTCGCGAGACGGCGGAAGACGCCAG
AATACCCCCCCGGCGAGTTCAAAGGGGTCGTGAACAGCGTCACGGCGAAG
CTTGCGGCGAAAAAGCTCAACCCAGAGGAGATCGAGGCGGCCCGGCAGGC
CGCGGAGACGACGGTTCGGCAGGCGCTGGTCAGCGGTCACGGTCTACCCC
CGGCGGATGTAGAGCACGCGTTTCCCGAGTCGTGCAACGTGGTGGTTGAA
GGGCTCCCGCTCGTGGGGGCCAAGCAGCAGAGGTGCTGCAAGGCGCAGAC
CACTTCGCGAGACGGC
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