mRNA_S-dermatodea_contig90855.17164.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90855.17164.1
Unique NamemRNA_S-dermatodea_contig90855.17164.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90855.17164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90855contigS-dermatodea_contig90855:2..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size474
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.2587733-CDS-S-dermatodea_contig90855:1..3731622925385.2587733-CDS-S-dermatodea_contig90855:1..373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90855 2..373 +
1694079897.8723805-CDS-S-dermatodea_contig90855:1..3731694079897.8723805-CDS-S-dermatodea_contig90855:1..373Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90855 2..373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.270731-UTR-S-dermatodea_contig90855:373..4751622925385.270731-UTR-S-dermatodea_contig90855:373..475Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90855 374..475 +
1694079897.8856606-UTR-S-dermatodea_contig90855:373..4751694079897.8856606-UTR-S-dermatodea_contig90855:373..475Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90855 374..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90855.17164.1prot_S-dermatodea_contig90855.17164.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90855 2..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90855.17164.1

>prot_S-dermatodea_contig90855.17164.1 ID=prot_S-dermatodea_contig90855.17164.1|Name=mRNA_S-dermatodea_contig90855.17164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
LGGGWLRFHSILRNNHRASGWLGWVRAVFISVHCPSGQLIFLEASVAASH
APARGLPCARRPVRPNRREYHANSSSVTSDKHASPYCKSHRVPSPNRSSK
KSHVNETFSMSGLRRLFWQTPTT*
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mRNA from alignment at S-dermatodea_contig90855:2..475+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90855.17164.1 ID=mRNA_S-dermatodea_contig90855.17164.1|Name=mRNA_S-dermatodea_contig90855.17164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig90855:2..475+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGAGGCGGCTGGCTCCGCTTCCACAGCATTCTGCGGAACAATCACAG
GGCATCGGGATGGCTCGGGTGGGTACGTGCAGTCTTCATATCCGTACATT
GTCCGTCGGGACAACTCATTTTCCTCGAAGCATCTGTCGCTGCGTCGCAT
GCACCAGCTCGGGGTCTTCCTTGTGCCAGGAGACCCGTGCGGCCTAACAG
ACGTGAGTATCACGCAAACAGCAGTAGCGTCACATCCGACAAACACGCGT
CCCCCTACTGCAAATCGCACAGGGTGCCGTCACCAAACCGATCGAGTAAG
AAATCACATGTGAACGAAACATTTTCGATGTCAGGGCTCCGACGGTTGTT
CTGGCAAACCCCTACGACTTGAATTCCGCGCCACGGCGCCTTACAGGCGC
ATCACTATATCAAGACTAGTCCAAGAACATTGGTCCAGCTTGACCACGCC
TGACGACGTTTGCCGTATCACAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig90855:2..475+

>mRNA_S-dermatodea_contig90855.17164.1 ID=mRNA_S-dermatodea_contig90855.17164.1|Name=mRNA_S-dermatodea_contig90855.17164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig90855:2..475+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGGAGGCGGCTGGCTCCGCTTCCACAGCATTCTGCGGAACAATCACAG
GGCATCGGGATGGCTCGGGTGGGTACGTGCAGTCTTCATATCCGTACATT
GTCCGTCGGGACAACTCATTTTCCTCGAAGCATCTGTCGCTGCGTCGCAT
GCACCAGCTCGGGGTCTTCCTTGTGCCAGGAGACCCGTGCGGCCTAACAG
ACGTGAGTATCACGCAAACAGCAGTAGCGTCACATCCGACAAACACGCGT
CCCCCTACTGCAAATCGCACAGGGTGCCGTCACCAAACCGATCGAGTAAG
AAATCACATGTGAACGAAACATTTTCGATGTCAGGGCTCCGACGGTTGTT
CTGGCAAACCCCTACGACTTGACTTGGAGGCGGCTGGCTCCGCTTCCACA
GCATTCTGCGGAACAATCACAGGGCATCGGGATGGCTCGGGTGGGTACGT
GCAGTCTTCATATCCGTACATTGTCCGTCGGGACAACTCATTTTCCTCGA
AGCATCTGTCGCTGCGTCGCATGCACCAGCTCGGGGTCTTCCTTGTGCCA
GGAGACCCGTGCGGCCTAACAGACGTGAGTATCACGCAAACAGCAGTAGC
GTCACATCCGACAAACACGCGTCCCCCTACTGCAAATCGCACAGGGTGCC
GTCACCAAACCGATCGAGTAAGAAATCACATGTGAACGAAACATTTTCGA
TGTCAGGGCTCCGACGGTTGTTCTGGCAAACCCCTACGACTTGA
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