mRNA_S-dermatodea_contig90679.17150.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.950e-36 Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 1
Query: 13 RQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
RQAHKRSLQVARK YWFEKF+WF++SENYLV+SGR+AQQNEVVVKKYLRPGDIYVHADLHGA+SCVVRNK
Sbjct: 652 RQAHKRSLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNK 721
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A7S2T9B4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9B4_9CHLO) HSP 1 Score: 113 bits (283), Expect = 3.570e-30 Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1
Query: 25 KRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNKV 225
K +VARK YWFEKF WFV+SENYLV+SGRDAQQNE++VK+YL D+YVHAD+HGAASCVVRN+V
Sbjct: 37 KPGFKVARKQYWFEKFDWFVSSENYLVVSGRDAQQNELLVKRYLTTHDVYVHADIHGAASCVVRNRV 103
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.300e-30 Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1
Query: 16 QAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
Q KR L+ RK YWFEKFHWF+TSEN+LVL+GRDAQQNE +VK+YLRPGD YVHAD+HGA+SC++RNK
Sbjct: 516 QTMKRQLKAVRKPYWFEKFHWFITSENFLVLAGRDAQQNEQLVKRYLRPGDAYVHADMHGASSCILRNK 584
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A8B9GSV1_ASTMX (NFACT-R_1 domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9GSV1_ASTMX) HSP 1 Score: 111 bits (277), Expect = 6.550e-30 Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
++Q ARK YWFEKF WF++SENYLV++GRD QQNE++VK+YLR GDIYVHADLHGA SCV++N
Sbjct: 47 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 109
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A3Q3KZ28_9LABR (NFACT-R_1 domain-containing protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3KZ28_9LABR) HSP 1 Score: 111 bits (277), Expect = 7.350e-30 Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
++Q ARK YWFEKF WF++SENYLV++GRD QQNE++VK+YLR GDIYVHADLHGA SCV++N
Sbjct: 59 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 121
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A3Q3JY82_MONAL (NFACT-R_1 domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3JY82_MONAL) HSP 1 Score: 110 bits (274), Expect = 1.980e-29 Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
++Q ARK YWFEKF WF++SENYL+++GRD QQNE++VK+Y R GDIYVHADLHGA SCV++N
Sbjct: 59 TIQKARKVYWFEKFLWFISSENYLIIAGRDQQQNEIIVKRYFRAGDIYVHADLHGATSCVIKN 121
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: W7TDM9_9STRA (Nuclear export mediator factor nemf n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDM9_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.370e-29 Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1
Query: 10 ARQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
++Q KR+L V RK YWFEKFHWF+TS+N+LV+SGRDAQQNE++VK+YLR GD YVHADL GAASCVVR+K
Sbjct: 17 SKQQRKRTLSVVRKPYWFEKFHWFITSDNHLVVSGRDAQQNELLVKRYLRVGDAYVHADLPGAASCVVRHK 87
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A3B4BJB3_9GOBI (Nuclear export mediator factor n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BJB3_9GOBI) HSP 1 Score: 109 bits (273), Expect = 3.250e-29 Identity = 44/63 (69.84%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
++Q ARK YWFEKF WF+++ENYLV++GRD QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct: 58 TIQKARKVYWFEKFLWFISAENYLVIAGRDQQQNEMIVKRYLRAGDVYVHADLHGATSCVIKN 120
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A8M9PZY7_DANRE (nuclear export mediator factor Nemf-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PZY7_DANRE) HSP 1 Score: 110 bits (275), Expect = 5.490e-29 Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
S+Q ARK YWFEKF WF++SENYL+++GRD QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct: 82 SIQKARKVYWFEKFLWFLSSENYLIIAGRDQQQNEMIVKRYLRAGDLYVHADLHGATSCVIKN 144
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A4D9CTN6_9STRA (NFACT-R_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTN6_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.020e-29 Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 10 ARQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
++Q KR+L V RK YWFEKFHWF+TS+N+LV+SGRDAQQNE++VK+YLR GD YVHADL GAASCVVR K
Sbjct: 657 SKQQRKRTLSVVRKPYWFEKFHWFITSDNHLVVSGRDAQQNELLVKRYLRAGDAYVHADLTGAASCVVRRK 727 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig90679.17150.1 >prot_S-dermatodea_contig90679.17150.1 ID=prot_S-dermatodea_contig90679.17150.1|Name=mRNA_S-dermatodea_contig90679.17150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp QNAARQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKback to top mRNA from alignment at S-dermatodea_contig90679:224..460+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig90679.17150.1 ID=mRNA_S-dermatodea_contig90679.17150.1|Name=mRNA_S-dermatodea_contig90679.17150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at S-dermatodea_contig90679:224..460+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig90679:224..460+ >mRNA_S-dermatodea_contig90679.17150.1 ID=mRNA_S-dermatodea_contig90679.17150.1|Name=mRNA_S-dermatodea_contig90679.17150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig90679:224..460+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |