mRNA_S-dermatodea_contig9060.17147.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9060.17147.1
Unique NamemRNA_S-dermatodea_contig9060.17147.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: D8LF51_ECTSI (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF51_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 2.430e-100
Identity = 164/195 (84.10%), Postives = 174/195 (89.23%), Query Frame = 1 
Query:  133 RGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLEFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 717
            RG R  VKSGTYDFEANKALLKLYQFFPDL +PE VAL+LAKALMNVPSTDFMALMYIV P LHR EPV SLKRAAD+LETAKFVDFWQ CA+GDMPALIE VPGF KH+RVFIVHTLA+TFQ   RQ MEQCLDLD  EL +FV AN+DVVSA+PDG +FKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF
Sbjct:    2 RGSRG-VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 195
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A835Z1S6_9STRA (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S6_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.130e-61
Identity = 122/231 (52.81%), Postives = 151/231 (65.37%), Query Frame = 1 
Query:   19 LEQMDFPASYEAIRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLEFKFALNEFNQIQPKKFKESVEFDKILKTIDKLS 711
            ++ M  PA + A+RPVVEHEYFDHR VPQLE YL EQA        SGTYDFEANKALLKLYQFFPDL K + VAL   KALM +P+ DF AL Y+        EP++SL RA DALE A++  FW +  E +  ALI+++PGF+   R   +  LA+TFQ+V    +E+ + L   ELEAFV      V    DG    FA NEFNQ+QPK+FKESVEF+K+LK +  LS
Sbjct:    2 VQPMQLPARHAAMRPVVEHEYFDHRVVPQLEAYLAEQA-------SSGTYDFEANKALLKLYQFFPDLVKADMVALAAGKALMALPAPDFAALSYLAPAAALAAEPLTSLARALDALEGARYGAFWAVTREPEAAALIQRLPGFADQARRVALSALAATFQSVPLSALEEAVALSGAELEAFVGGLGGEVKLG-DG-RAAFARNEFNQMQPKRFKESVEFEKVLKAVGTLS 223
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: D8LF54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF54_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.800e-56
Identity = 101/149 (67.79%), Postives = 125/149 (83.89%), Query Frame = -2 
Query: 1727 LIYDPKSGCNEEDSEALFRKFSQEAGLNPSDASTVSDYIIATKRHNVYASDDPDLRAFIDLDMAVVGRERTAYLAYA-QVREEYIHVPSETYCRKRAEILRGFLATDPIYATEKYRQGLEARARANVEAEVALLSEGTIPA-CPHEILE 2167
            ++YDPKSG NEEDSEALFRKFS+  GL+ SD++TVSDYIIATKRH+V  SDD DLRAFIDLDMAVVGRER+ YL YA Q+REEYIHVP++TYC+KRAEILR FL+T  I+AT++Y++  EA+AR NV AEV +L+ G IP  C  +++E
Sbjct:   78 VVYDPKSGSNEEDSEALFRKFSEAVGLSASDSTTVSDYIIATKRHSVSGSDDQDLRAFIDLDMAVVGRERSGYLTYASQIREEYIHVPADTYCKKRAEILREFLSTGSIFATDEYQRTFEAKARENVAAEVEMLNAGVIPTGCTEQVVE 226
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A7S2FZN4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZN4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.200e-44
Identity = 99/230 (43.04%), Postives = 145/230 (63.04%), Query Frame = 1 
Query:   28 MDFPASYEAIRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAAN-SDVVSAAPDGLEFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 714
            M  PASYE I  +++ + F+  ++ +L+ YL+EQ       + + TYDF ANKALLKLY F+PD +  + +AL L KALM +PSTD M L+Y+V      +EPV++L R A  LETAKFV+FW++   G    L++ V GF + +R +++  L+ TFQ V+ +     L LD  +LE +V+AN SD +S   +G    F  N  NQ +PKKFKE++ FD++L  ID L+S
Sbjct:    1 MALPASYEEIATLLDEQAFEKSSIEKLQAYLDEQ-------IATETYDFVANKALLKLYSFYPDQASDQYIALALTKALMALPSTDMMLLLYLVPESAQTKEPVATLVRCAVHLETAKFVEFWEVANLGGNE-LLDAVSGFDEAIRSYMIGVLSITFQKVESETFADLLALDEGDLEEYVSANQSDKLSI--EGKNVVFTPNSENQQRPKKFKENISFDQMLPLIDFLAS 220
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A7S2H0N4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0N4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.870e-38
Identity = 89/232 (38.36%), Postives = 136/232 (58.62%), Query Frame = 1 
Query:   25 QMDFPASYEAIRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLEFKFAL---NEFNQIQPKKFKESVEFDKILKTIDKLS 711
            +M+ P S ++I   +  +      +  L+EYL EQ + D       TYDF ANK L+KLYQF+P+ S    +AL + K++M +PSTD   L+Y+V   L  +EP+ +L R AD LETA+FV+FW++   G    L++ +PGF + +R F++  L+ TFQ ++ +     L LD + LE F+A  +D +       E KF +   N  NQ +PKKFKE++ FD +L  I+ LS
Sbjct:    5 EMEIPQSAQSIAEKLALDEHSVELIDTLQEYLNEQVQTD-------TYDFMANKTLMKLYQFYPERSNENCIALAVTKSMMALPSTDLSVLLYLVPETLALKEPIHTLVRCADHLETARFVEFWEVANLGGNE-LLDAIPGFPEAIRSFMIGVLSMTFQKLQSETFLDLLMLDEESLEEFIAEQTDKLCLE----EKKFVIFLPNSENQSRPKKFKENISFDHMLPIINLLS 224
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A7S2WSD7_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSD7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.590e-35
Identity = 84/222 (37.84%), Postives = 126/222 (56.76%), Query Frame = 1 
Query:   49 EAIRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLEFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 714
            E++   +    +D  A+  LE Y+ EQ       V+  TYDF ANKALLKLYQFFP  +    VALIL KALM +PSTD   L+Y+V   +  +EP+ +L R  + LET KFV+FW++   G    L++ + GF + +R +++  L  TFQ+++ +     + L  + L  +V   SDV+    +G +  F  N  NQ QPK FKE++ FD +   +  L+S
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQ-------VEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLESEVFMDLVALPDEHLAEYVGTKSDVMRL--EGKQVIFVENPQNQPQPKTFKENISFDHLAPVMSLLTS 223
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: W7U338_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U338_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.770e-32
Identity = 84/227 (37.00%), Postives = 133/227 (58.59%), Query Frame = 1 
Query:   37 PASYEAIRP-VVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLEFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 714
            P+SY ++   V+    +    V  LEEYL+ Q       VK G+YDFEANK+LLKLY  +P L+  E+V  IL KAL+N+P+TDF  L+YI+   L   E V ++K AA+ALETA++ DFW I       A+   +P +   +R  I+   A+T++AV + ++   + L   EL++F+ AN+  + A  +     FA N+ NQ   +K+KE V+   +L  +++L++
Sbjct:   44 PSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQ-------VKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A7S2SPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 9.650e-26
Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1 
Query:   49 EAIRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVK 510
            E++   +    +D  A+  LE Y+ EQ       V+  TYDF ANKALLKLYQFFP  +    VALIL KALM +PSTD   L+Y+V   +  +EP+ +L R  + LET KFV+FW++   G    L++ + GF + +R +++  L  TFQ+++
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQ-------VEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLE 157
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A1X6NQY4_PORUM (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQY4_PORUM)

HSP 1 Score: 109 bits (272), Expect = 2.680e-23
Identity = 66/180 (36.67%), Postives = 104/180 (57.78%), Query Frame = 1 
Query:   55 IRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSA 594
            +  +++ + +D   +P LEEY+E+Q       V +GT D  AN A LKLYQF+P   K   V+ IL KA+M +PSTDF+  MY++       EP+ +L + A  LET +F DFW   A G +  L++ VPGF + VR F++  +  T++ V+R  + + L L+  +  A  AA  +V+ +
Sbjct:   14 VMTLLQSQRYDPDILPTLEEYVEQQ-------VATGTNDAMANLATLKLYQFYPATYKTAVVSKILIKAIMALPSTDFLCAMYLIPAATADDEPIPALVQLASMLETGRFEDFWP--ATGAVRQLLDGVPGFDEAVRSFMLVVIGRTYKRVERTVLARLLGLEGVDEAAEEAAVDEVIKS 184
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BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Match: A0A3S1B284_ELYCH (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1B284_ELYCH)

HSP 1 Score: 105 bits (261), Expect = 6.170e-22
Identity = 69/204 (33.82%), Postives = 108/204 (52.94%), Query Frame = 1 
Query:   76 EYFDHRAVPQLEEYLEEQARGDRCFVKSGTYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVAPLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHVRVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLEFKFALNEFNQIQPKKFKESVEFDKI 687
            E ++   +  L+ Y++ QA          TYD EAN A+LKLYQF P+L + E  A+IL KAL N+P +DF+    ++ P     EPV+ +   A+ LETA F +FW I    D+  L+E + GF   +R F+ H +AST+  +++  + Q L  +V E +A    +    +   DG  + F  N+   I+ K   E + FD +
Sbjct:   17 ERYNPENLVNLQRYVDMQAN-------ENTYDLEANLAVLKLYQFNPNLYQAEVTAVILLKALTNLPHSDFILCKCMIEPGRLLEEPVAKVLVLAELLETANFNEFW-ITLMKDLDPLVEGIVGFEDSIRKFVCHVVASTYSTIRKDKLRQLLG-NVTEAQASQWVSKYGWTEQLDG--YVFIANQDETIRTKNITEKISFDSV 209
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9060.17147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF51_ECTSI2.430e-10084.10Eukaryotic translation initiation factor 3 k subun... [more]
A0A835Z1S6_9STRA2.130e-6152.81Eukaryotic translation initiation factor 3 k subun... [more]
D8LF54_ECTSI4.800e-5667.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FZN4_9STRA3.200e-4443.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2H0N4_9STRA4.870e-3838.36Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WSD7_9STRA3.590e-3537.84Eukaryotic translation initiation factor 3 subunit... [more]
W7U338_9STRA4.770e-3237.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2SPG3_9STRA9.650e-2640.91Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1X6NQY4_PORUM2.680e-2336.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A3S1B284_ELYCH6.170e-2233.82Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9060contigS-dermatodea_contig9060:368..5408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue5.7e-84
Seed eggNOG ortholog2880.D8LF51
Preferred nameEIF3K
KEGG koko:K05699,ko:K13344,ko:K15028
KEGG TC3.A.20.1
KEGG Pathwayko04146,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04146,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.ribosome binding
EggNOG OGsKOG3252@1,KOG3252@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons7
Model size2168
Cds size708
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925383.7269108-UTR-S-dermatodea_contig9060:367..5981622925383.7269108-UTR-S-dermatodea_contig9060:367..598Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9060 368..598 -
1694079896.660422-UTR-S-dermatodea_contig9060:367..5981694079896.660422-UTR-S-dermatodea_contig9060:367..598Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9060 368..598 -
1622925383.7367833-UTR-S-dermatodea_contig9060:875..20921622925383.7367833-UTR-S-dermatodea_contig9060:875..2092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9060 876..2092 -
1694079896.6733806-UTR-S-dermatodea_contig9060:875..20921694079896.6733806-UTR-S-dermatodea_contig9060:875..2092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9060 876..2092 -
1622925383.8122303-UTR-S-dermatodea_contig9060:5396..54081622925383.8122303-UTR-S-dermatodea_contig9060:5396..5408Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9060 5397..5408 -
1694079896.760319-UTR-S-dermatodea_contig9060:5396..54081694079896.760319-UTR-S-dermatodea_contig9060:5396..5408Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9060 5397..5408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925383.7477999-CDS-S-dermatodea_contig9060:2092..22001622925383.7477999-CDS-S-dermatodea_contig9060:2092..2200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 2093..2200 -
1694079896.6840596-CDS-S-dermatodea_contig9060:2092..22001694079896.6840596-CDS-S-dermatodea_contig9060:2092..2200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 2093..2200 -
1622925383.762931-CDS-S-dermatodea_contig9060:2828..29001622925383.762931-CDS-S-dermatodea_contig9060:2828..2900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 2829..2900 -
1694079896.6954541-CDS-S-dermatodea_contig9060:2828..29001694079896.6954541-CDS-S-dermatodea_contig9060:2828..2900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 2829..2900 -
1622925383.7717454-CDS-S-dermatodea_contig9060:3231..33721622925383.7717454-CDS-S-dermatodea_contig9060:3231..3372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 3232..3372 -
1694079896.715228-CDS-S-dermatodea_contig9060:3231..33721694079896.715228-CDS-S-dermatodea_contig9060:3231..3372Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 3232..3372 -
1622925383.780822-CDS-S-dermatodea_contig9060:3931..40721622925383.780822-CDS-S-dermatodea_contig9060:3931..4072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 3932..4072 -
1694079896.72984-CDS-S-dermatodea_contig9060:3931..40721694079896.72984-CDS-S-dermatodea_contig9060:3931..4072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 3932..4072 -
1622925383.7898104-CDS-S-dermatodea_contig9060:4715..48231622925383.7898104-CDS-S-dermatodea_contig9060:4715..4823Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 4716..4823 -
1694079896.738326-CDS-S-dermatodea_contig9060:4715..48231694079896.738326-CDS-S-dermatodea_contig9060:4715..4823Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 4716..4823 -
1622925383.8030846-CDS-S-dermatodea_contig9060:5258..53961622925383.8030846-CDS-S-dermatodea_contig9060:5258..5396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 5259..5396 -
1694079896.749652-CDS-S-dermatodea_contig9060:5258..53961694079896.749652-CDS-S-dermatodea_contig9060:5258..5396Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9060 5259..5396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9060.17147.1prot_S-dermatodea_contig9060.17147.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9060 2093..5396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9060.17147.1

>prot_S-dermatodea_contig9060.17147.1 ID=prot_S-dermatodea_contig9060.17147.1|Name=mRNA_S-dermatodea_contig9060.17147.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=236bp
MPLEQMDFPASYEAIRPVVEHEYFDHRAVPQLEEYLEEQARGDRCFVKSG
TYDFEANKALLKLYQFFPDLSKPESVALILAKALMNVPSTDFMALMYIVA
PLLHRREPVSSLKRAADALETAKFVDFWQICAEGDMPALIEKVPGFSKHV
RVFIVHTLASTFQAVKRQYMEQCLDLDVQELEAFVAANSDVVSAAPDGLE
FKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF*
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mRNA from alignment at S-dermatodea_contig9060:368..5408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9060.17147.1 ID=mRNA_S-dermatodea_contig9060.17147.1|Name=mRNA_S-dermatodea_contig9060.17147.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5041bp|location=Sequence derived from alignment at S-dermatodea_contig9060:368..5408- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGTCCGCAATCATGCCTCTGGAGCAAATGGACTTCCCGGCGTCATACGA
GGCGATTAGGCCGGTGGTGGAGCACGAGTACTTTGACCACAGGGCTGTAC
CGCAGCTGGAGGAATACCTTGAAGAGCAGGCGAGAGGAGATCGATGTTTT
GTTGTTTCGGGTTGATGGGTATGTAGTTGTGGCTCCGTGCGGCAATATCT
GGAAGCCGTTGATGCAGTTTTGTTTGTCGTTAGCTTGTTGGTGAACAAGG
TTTAATGCCGCATAGGTTCCTAGTGCGTAGTGCGTTTCAAAATGAGGAGG
TGGAAGCTATGTTCCAATGATGTGTTGCTCGTTCAGAGTCGTGAGAAGCA
TATGCCCCCAAGCTACCGTGATTGCAATGCGCAAGTGACTTCGGTCGATT
TACCCACGCTCCGACCGAACAATCGGTCGCCATCCTTGCGAGTGCCGTGT
ACAACGAGCTCCCGAAACAAACACATCACAGCAGCTGTATTTGCGACGGT
TGCTCCCTTTGCCATCTATCTTGACGGTTGCTTATGCCGGTCTTCGCACC
GCGTGCTCTCTCGGTACCTTCGCTTGGGCCTACAGGTGAAGTCGGGGACT
TACGACTTTGAGGCCAACAAAGCGCTGCTCAAGCTCTACCAGTTCTTCCC
GGACCTGTCAAAACCGGAGAGCGTGGCTCTCATCCTAGCAAAGGTTGGTT
TTCTCCGTATATTTGTACCTCAGTGTGACGTGGCGCCTGTCAAGTGTTTT
ACGTGAAGGGATTCCTTCCGCTTGACCCCTTGTCAGAGCTGGGCGTATCG
GGAGAGGCTGTGCTGAAAAGGCAATGTACTGCCACCATATCAAACTGGAG
TTGATGGCCCCGCGTGATTCCGTCACAGGCAAAATGCGGCCATCACGCGC
CACCGTGGGAGCGCCGAAAACGCCGCCTGTTGCATCCCCACCCCCGCTAC
GCCTGCTACCCTGGTTATGGCGTAGCTGACACCCCTGCGCGGCCAAAGAC
TGCGTCTAATGCTGCAGTGTTGATGCGCTTGCCGACACGCTAGGCTTGAT
ATTTTGCACTATCGTGTGAGGCCTCTGTTGCGACGAGACACTCTACGCGA
TAAGCTGCGGGTTGTTCGACAGCCGTCTCTGTGGTAATCGATTTTATAAC
GACTTAGCTATTGCACGAGTGTTTCGGGTGGCTTAAATGTCTCCGTGGTG
ATTTGGGGATCACATAATGTTAGCACGGCAAGACCCTGTTGTGGGGCGCA
TCCCAACCTTTGCGGGCTATTTGCCTTGACGGCCTTGCCGACGTTTTCAC
ATGCTTCGATTATCCCCCCTCGGCATTCCCATACAGGCATTGATGAACGT
GCCGAGTACGGACTTCATGGCTCTTATGTACATTGTGGCACCTCTCCTCC
ACCGGCGTGAGCCTGTGAGCTCGCTCAAGAGGGCAGCGGACGCATTAGAG
ACGGCAAAATTTGTCGACTTTTGGCAGGTACGTCCCGCCAAGGGTCGCTC
GCAACCCCCCTCCCCTCCCCTCCCCTCCCTTCTGCGAACCAATCCGTCGA
GTGGTGTGCGTTGTGCTAAATAATGCCGGAGCGTAGGCCGTTACGATGGC
AAGCGGGGCGGAGAGGCAGCGTGTGGGCGCGTGCAGTCCCGTTATTCCCC
AGTTGTGTTGTCACCGAAGGCCGTGGGGATGGTGCCTTTGTGTGAAGCGA
CACTTGATTCGCCGAGATCGGGTGTCCCGTCATTGATACTGAAAGCTTTG
TTGACTGCGGGGTTGCTTTTCGAAAACGGCTGTGCAGCGTCGAATGGCCC
GCCGCTCAGCCGAGAGAAATATTCCCAAACGAGTCGCAAGAAGAGCTTAA
TATACGAACACGAGTGCCTAAATCGGTTTCCCATGTATTATTCTCACTGC
TTTCGTCATGTTGAGCGTGATTTGTGAAAATGCCCCCAGTCACGCTGCTC
TGCGTCGCTGGCCCCAATGATCACCCCTCCGACACGAGCGTCTCAACTCA
TGCCGTCGGCAATAACGTTGTGTGTTACGGTTGCAGATTTGCGCGGAGGG
GGATATGCCCGCCTTGATAGAGAAGGTGCCGGGGTTCTCGAAGCACGTCC
GCGTGTTCATCGTCCACACCTTGGCGTCAACGTTCCAGGCCGTAAAGCGA
CAGTACATGGAGCAGTGCCTCGACTTGGTGAGCTTTTCGGCGGCTTGGTG
TCTCGCGCGCCAGCTGCGGGTGGTGTTTGCGCTTCGATTTGTAATCCCAT
GTCTCCGTGGCGATTGCACCGGTTCACCTTTTTGAGCAGAGCGTGGGGCG
CCATGATCGACCATGGTTGTTCGATAGTGCGTAGGGCGATCTAGTAGCAG
ACCGCAATCACTCTAACTGCAAACCAAATACTACGGCTTCAACGCAGCAG
GAGATCCACACAGGGGGGACGGCGGGCGCATGTCCATGTTGCTAAACGTC
AAATGTACGCCTGTCTCATCGGGTATCTTGTCCGTGACTGTGTCTTGATT
GGTTGCAGGACGTGCAAGAATTGGAGGCGTTCGTAGCAGCCAACTCGGAT
GTGGTGTCGGCGGCGCCAGACGGACTCGAGGTCAGTGTTTTTCTCCTCTG
GCATATTTATCTGCTGAAATTAGTTTTACACTCAGGGTCACACTCGAATG
AACTCCAGAGTAATCTCGCGGCTTTGCATTTATTGTAGTTGCGAGGGGAC
GAAAGGTGTTATGGCGAGAAAGGAAATAACAGTAGGCATCCGGCTCCATA
TCGCCTAAGATAGTCAGTACGAGTTTCCTGGCAAAGGATGCACGGAGCGC
ACGGTCCCGCTCTTGTGTTCCAAGCCACCTCAAACTTTTTACGTCACATT
TTTATGTGTGTTGCGTTTGTGTGAGTATTTGCCATCACAAGCGTTCCTTA
TTTATTTGCTTGGCTGTTTTGAACCGCGTAGTAAACGCCTGCCATGCAGC
CACGGGGAACACCTGTAGACGCTACGCATGTCCACACTATTCCGGTCATC
ACGGGCTACGTTGTGCGGCAGCGGACGACACCATGGGGCTCTACGCCCAC
TCGTTCGATATGCAATCGAGCTCGCTAGGATGATTAGTCTTCGCGCACTG
CCACAAGTTTTTCGATAAAATGGTCCGAGTAATACATGCGTTGGTTCACT
TTTCTGTGATTCACGTCTGATTTGCACTTGTATCATATTACTTCCTTTTG
CCGCGCAGTTCAAGTTTGCGCTGAACGAGTTCAACCAAATCCAGCCCAAG
AAGTTTAAGGAGTCCGTTGAATTTGACAAGATCCTCAAGACCATCGACAA
GCTCTCCAGCTTCTAAGGGGTCGTATTATAGTACTGGGCGCCTCCAGAAG
CTTACAGTACAGTAATGGAGAGATCGCTTGCTGCGCGAATTGGTGTTGAG
CTAGCTGTTACAATCGTGTCGCGAACACGCGTCTGCGAGGGCGACGTGCC
TCCTCACGAAAGTGCTGGGTGCCTCCTCACGAAAGTGCTGGGGTGCGGCA
GTGTTCTGCTGCCCAGCCCGTAGCGATATTTTCGCTCGTTGGTAAGATCA
CAGCAGCCCCGTGGCTCTGTCGCGTCGTTCGATGCGGTCGTAGCGTTTCG
GCTACTTCATGGCACAAAATGTTATCTCATTATTAAAGTACGAACGCGAC
GGCTACCTTGTTCGTAGCGGCACTTCGGAGGCACTAGTTGGTAAAATAGT
ATCAAGAGTATAGGAATGGGTACTAGGTTTCTGCGCGCCTCTTGCACCGC
CCCTCCAGTAGGAGGGAGTGGGGAGTGCCGTACGTATCAGTCGGGGTTCG
TTGCTATAGTCGTAGTACGGGGCTGTGTGAGAACTGTGCGTGGTAAACAG
GCATCCTATTTCTGCGTCCGACACACCTGGGCGAGCGTGGCAGCTGCATC
TTGCTCAGATATCATCAGGAGTAAAGCATATCCCTACTGGCGTCACTCTC
GTATCACGTCCCATGGACACCCTGCGAGTATGTCTGCATGTCCCCATTGC
CTCTGTAACCTGGGAGTATCCAATTCCATCCCCCTCTCGTCAGTTGCCCA
CACGACATTTCTTTGATACCAACTGGAGCACTACAGGCATCCTGTGCATG
CGGGGGACAAATACTCATATTGTTCCAAGTGTTCAGCTTTCAATCCCGTA
GGTACCTCTAGTAGCCATGAAATTGTTTTATAACCCCCTTCTTTATTCCC
TTAACATTATATAGTTAATACAGCTTCATGCCTTTGGAGCACGTAAGCCG
CCGGGATTTGTTCAAATACAACTTCAACCTGGACAGCAGTAGTAACAACG
CATATCAATCACACGTCTTGCATTCAAGAATCTCATGCGGGCATGCTGGG
ATAGTCCCTTCACTGAGCAGGGCCACCTCCGCTTCTACATTTGCCCGTGC
TCTGGCCTCTAAGCCTTGTCGATACTTTTCCGTGGCGTAAATCGGGTCCG
TCGCGAGAAACCCGCGCAAGATTTCCGCTCGTTTTCGGCAGTACGTTTCG
GAAGGCACGTGGATGTATTCCTCGCGTACCTGGGCGAAACAAGGGAAATC
CGGGGCGGGGAGAGGAGTGGGAACGCACGAAATGCGAAGAAGTTATTATC
TTATGCTGTTCTTGGTAGACAGCCTGTCATATACCGAGCACAAAAGCGCC
ACTAAAAGAATAGGCGCCAACACGGAGGCATGGCGGAAGGATATACATCC
GGAGGCTGAACCCCTCTCTGGCACCTCTTAACATTGTTAAACTCTCAACA
GAACACGGCGAACGAGCAGGGGTTCCCTGCTGCGATTTGTGTGTTCCATT
CACCTGCGAGGCGTAGGCGAGGTATGCGGTTCGCTCCCTTCCTACGACAG
CCATGTCGAGGTCGATAAATGCGCGCAGGTCTGGGTCATCGGAGGCATAT
ACATTGTGGCGTTTCGTGGCGATGATGTAGTCAGATACGGTGCTCGCGTC
CGAAGGGTTTAAGCCCGCCTCTTGAGAGAATTTCCGGAACAGAGCTTCGC
TATCCTCTTCGTTGCATCCGCTCTTGGGGTCATAGATAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9060:368..5408-

>mRNA_S-dermatodea_contig9060.17147.1 ID=mRNA_S-dermatodea_contig9060.17147.1|Name=mRNA_S-dermatodea_contig9060.17147.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at S-dermatodea_contig9060:368..5408- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTCTGGAGCAAATGGACTTCCCGGCGTCATACGAGGCGATTAGGCC
GGTGGTGGAGCACGAGTACTTTGACCACAGGGCTGTACCGCAGCTGGAGG
AATACCTTGAAGAGCAGGCGAGAGGAGATCGATGTTTTATGCCTCTGGAG
CAAATGGACTTCCCGGCGTCATACGAGGCGATTAGGCCGGTGGTGGAGCA
CGAGTACTTTGACCACAGGGCTGTACCGCAGCTGGAGGAATACCTTGAAG
AGCAGGCGAGAGGAGATCGATGTTTTGTGAAGTCGGGGACTTACGACTTT
GAGGCCAACAAAGCGCTGCTCAAGCTCTACCAGTTCTTCCCGGACCTGTC
AAAACCGGAGAGCGTGGCTCTCATCCTAGCAAAGGTGAAGTCGGGGACTT
ACGACTTTGAGGCCAACAAAGCGCTGCTCAAGCTCTACCAGTTCTTCCCG
GACCTGTCAAAACCGGAGAGCGTGGCTCTCATCCTAGCAAAGGCATTGAT
GAACGTGCCGAGTACGGACTTCATGGCTCTTATGTACATTGTGGCACCTC
TCCTCCACCGGCGTGAGCCTGTGAGCTCGCTCAAGAGGGCAGCGGACGCA
TTAGAGACGGCAAAATTTGTCGACTTTTGGCAGGCATTGATGAACGTGCC
GAGTACGGACTTCATGGCTCTTATGTACATTGTGGCACCTCTCCTCCACC
GGCGTGAGCCTGTGAGCTCGCTCAAGAGGGCAGCGGACGCATTAGAGACG
GCAAAATTTGTCGACTTTTGGCAGATTTGCGCGGAGGGGGATATGCCCGC
CTTGATAGAGAAGGTGCCGGGGTTCTCGAAGCACGTCCGCGTGTTCATCG
TCCACACCTTGGCGTCAACGTTCCAGGCCGTAAAGCGACAGTACATGGAG
CAGTGCCTCGACTTGATTTGCGCGGAGGGGGATATGCCCGCCTTGATAGA
GAAGGTGCCGGGGTTCTCGAAGCACGTCCGCGTGTTCATCGTCCACACCT
TGGCGTCAACGTTCCAGGCCGTAAAGCGACAGTACATGGAGCAGTGCCTC
GACTTGGACGTGCAAGAATTGGAGGCGTTCGTAGCAGCCAACTCGGATGT
GGTGTCGGCGGCGCCAGACGGACTCGAGGACGTGCAAGAATTGGAGGCGT
TCGTAGCAGCCAACTCGGATGTGGTGTCGGCGGCGCCAGACGGACTCGAG
TTCAAGTTTGCGCTGAACGAGTTCAACCAAATCCAGCCCAAGAAGTTTAA
GGAGTCCGTTGAATTTGACAAGATCCTCAAGACCATCGACAAGCTCTCCA
GCTTCTAATTCAAGTTTGCGCTGAACGAGTTCAACCAAATCCAGCCCAAG
AAGTTTAAGGAGTCCGTTGAATTTGACAAGATCCTCAAGACCATCGACAA
GCTCTCCAGCTTCTAA
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