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Homology
BLAST of mRNA_S-dermatodea_contig9057.17143.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.620e-10 Identity = 137/283 (48.41%), Postives = 157/283 (55.48%), Query Frame = 1
Query: 1 IQGVHRLLDAGDSVDIRDSAQRTLLHRACEEAGVDTVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRLLIERGGADIRARXXXXXXXXXXXXXXXXXXXXXXXLAQGVDVESPDKTGRRCLHLSVERNRLEAIRELLNHRCDVEATLSDGLTRPLXXXXXXXXXXXXXXXXXXXXXHA-AVGPDGHTALHMAAKEGKAAIVELLIDRKADLHAKDHRGRTPLQFSSNRRCKERLREAERREQKAAAXXXXXXXXXXXXIVLKRREQELLDRVDLRSRAR 846
+ GV +LL+ G S+D+RD+AQRTLLHRACEEA + TV XXXXXXXXXXXXXXXXXXXXXXXXXX +VRLL+E+ GAD RAR XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX A+GP GH L ++ +RRCKER+REA+RRE++AA +RREQELLDRVDLR+RAR
Sbjct: 229 MSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASIATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEIVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARAR 511
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 72.4 |
| Seed ortholog evalue | 3.9e-10 |
| Seed eggNOG ortholog | 2880.D7G7Z2 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-06_009530.1 |
| Exons | 5 |
| Model size | 864 |
| Cds size | 864 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9057.17143.1 >prot_S-dermatodea_contig9057.17143.1 ID=prot_S-dermatodea_contig9057.17143.1|Name=mRNA_S-dermatodea_contig9057.17143.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=288bp
IQGVHRLLDAGDSVDIRDSAQRTLLHRACEEAGVDTVVKLLGLGATVNAV
EKRRQTPLHRACERGRTDVVRLLIERGGADIRARAKLQHEPLHVACIGNW
GEVVRFLLAQGVDVESPDKTGRRCLHLSVERNRLEAIRELLNHRCDVEAT
LSDGLTRPLHIACRRGFEKAATLLLNHHADHAAVGPDGHTALHMAAKEGK
AAIVELLIDRKADLHAKDHRGRTPLQFSSNRRCKERLREAERREQKAAAE
RTKEAAQRRLEIVLKRREQELLDRVDLRSRARMAGGL* back to topmRNA from alignment at S-dermatodea_contig9057:1441..3926+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9057.17143.1 ID=mRNA_S-dermatodea_contig9057.17143.1|Name=mRNA_S-dermatodea_contig9057.17143.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2486bp|location=Sequence derived from alignment at S-dermatodea_contig9057:1441..3926+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCAAGGTGTACACAGGCTGTTGGACGCTGGCGACTCGGTTGATATCAG
GGATTCCGCCCAACGCACGCTTTTACACCGAGCCTGCGAAGAGGTAAGTG
GGCGCTCCTTCTCTCGAAAAAACTACGCAGACAGCAAGGTAGTATCGGCG
TGACGAATGCTAATATGGCAAGCGGGCGTGGAGGTGAGACGTGCCTCTGT
GGTGTCACTGTGTGGCGACGTTGCTATGGAGCTGTTGGGGTGCAGTTCAG
TGCTGACACATGTGTGAGGGTGCACGGATCGTCGGTTTCGATTACACCAA
AACACTGGCCGCAGTATCGATGCGAAGACTCGGTAAGAAATGGCCCTCTC
CCTCTGAAAATGGCGGTTCTTGGAGTGCATGGCACGACGCGCTGGCCCTT
TCTGTCAGCACTGCAGCAAACCAATGCAACGCCGGCGGATACTCTACGAA
AGGCTGTTAAGGAACTCGCATCATCGAGCACGCGCACAGTTGACGCCAGC
CTCTTTTCAATACTCCAGGCAGGTGTCGACACCGTGGTGAAGCTGTTGGG
TCTTGGAGCGACCGTGAATGCGGTGGAAAAGAGGAGACAAACACCGCTTC
ATCGTGCTTGCGAGCGAGGCCGGACAGACGTCGTAAGGTGGGCGAATCCG
TGGGTGCGAACACGTAGTTAAAGTATTTATCGAATCGAATAGCTTTACCG
GTACGTTTTGAAGCGGATACGGGCGCCAACTTCTTGTGACTCTTGATACT
AGGCGCTTCGGGCGGCGTGCGGGTTTTATCTCTGTCATGTCTGGACATCA
GTTTTTTGTTCGGTGTAGGAGTGCTGGATTGCACTTGCTCTTGTGCCTTC
ATGTGAACACGAGCGGGATGAGCATCCACTTTTGCAATTGCAAAAATGGC
GGGCCGGTCTGTTACACGTGTGACAATCAATCAAATCAATCAATCAATCA
ACTAGCGACGAGTCATCCTCCGATAGAGGGGCACATTTCGAGCGGAGCTG
CAGTGCACGCACTCAACACGGCCGGAACGTTGGAATCAAATTTCCGCCAA
TTTCAGGAGGATGAACAATATTAATATTTTCCCTCTGGTTCTCTTGAGCC
GAACACCGCAGATTAGAGTTTCCTGGCCGCACCGAAAAAGAACGTGCCAC
CCCTCTCCCTGGAGTTGGCGTCATAACCCCCCGCCACTTTGGCCCCGTCT
GAAGTATTTGTCCGATTTGCCGTTACCATCATATTAATTGTGCCGTTGAT
CGCGAAGGTTGCTGATAGAGAGAGGAGGAGCGGACATTCGTGCCCGTGCA
AAACTGCAGCATGAGCCCTTACACGTGGCTTGCATCGGGAACTGGGGCGA
GGTGGTGAGATTCCTCCTGGCGCAAGGCGTGGATGTGGAGTCACCCGACA
AAACTGGCCGGCGGTGCCTGCACCTGTCCGTGGAGAGAAACAGGCTGGAG
GCTATCCGAGAGCTGCTCAATCACAGGTACAGTATCGTACGCGTTGTTTG
CGATTGCTGGGCGAGTTTTGCTGCCTCCTCCCGCGATCTACGCACACCAC
GTTCTGGTAAACAAATCTACGCACAAGGCGATTGTGGCCAAAAGCTCAGC
TGTATTACATTCCACGACTCAGCACGTCTCCGTTTCCGGCACAGAGCGTT
AAATATCGGCGAAAACGCAAGGCCCTTGTTCTCTCAAGATTGTGGATGCA
CTGCTAGCGAAGTCACCCCGCGCCCGGTCACGGTTCACGGTGAAGCCTCC
GCTGTACATGCCGTACAGGTGCGATGTCGAAGCGACGTTGTCGGACGGGC
TAACCCGGCCGCTGCATATCGCCTGCCGCCGGGGATTCGAGAAGGCCGCA
ACACTTTTGCTCAACCACCACGCAGACCACGCCGCTGTGGGACCCGATGG
GCACACTGCCTTGCACATGGCGGCGAAGGAAGGGAAAGCGGCGATTGTGG
AGGTGCGCTATTTTGTTTGCGTTTCTAGAGCGGGGCAGCTGCCGCCGATG
CCGTGTTGGGGCATGCCTTACGTTAACTGCTCACCTTTGATTTTGACGCT
TTTGAACTATTTTAACGAGGAGGGGACGCGTGGGATGTCGGTGTGCACAT
CCAAGAACAACCAGGATGCGATTTTGTCCCCGTGTTCCCTTGTAGTCGAT
ATTCAAACGACCTTTCGTCCAATCTCGACAAAAGTCTCCTCACCCACCCC
CATTGATATGACCACGCGGACACGCCCAACCTTGCAGCTTCTGATTGATC
GAAAGGCGGATTTGCACGCCAAAGATCATCGCGGTCGCACCCCTCTGCAG
TTCAGTAGCAACCGCCGGTGCAAGGAGAGGTTAAGGGAGGCGGAGCGGAG
GGAACAGAAAGCTGCCGCCGAGCGCACGAAAGAGGCGGCGCAGCGAAGGC
TAGAGATTGTTCTCAAGCGCAGGGAACAGGAGTTGCTCGACAGAGTTGAC
CTGAGATCCAGGGCGCGCATGGCCGGCGGTCTGTGA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9057:1441..3926+ >mRNA_S-dermatodea_contig9057.17143.1 ID=mRNA_S-dermatodea_contig9057.17143.1|Name=mRNA_S-dermatodea_contig9057.17143.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at S-dermatodea_contig9057:1441..3926+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCAAGGTGTACACAGGCTGTTGGACGCTGGCGACTCGGTTGATATCAG
GGATTCCGCCCAACGCACGCTTTTACACCGAGCCTGCGAAGAGATCCAAG
GTGTACACAGGCTGTTGGACGCTGGCGACTCGGTTGATATCAGGGATTCC
GCCCAACGCACGCTTTTACACCGAGCCTGCGAAGAGGCAGGTGTCGACAC
CGTGGTGAAGCTGTTGGGTCTTGGAGCGACCGTGAATGCGGTGGAAAAGA
GGAGACAAACACCGCTTCATCGTGCTTGCGAGCGAGGCCGGACAGACGTC
GTAAGGCAGGTGTCGACACCGTGGTGAAGCTGTTGGGTCTTGGAGCGACC
GTGAATGCGGTGGAAAAGAGGAGACAAACACCGCTTCATCGTGCTTGCGA
GCGAGGCCGGACAGACGTCGTAAGGTTGCTGATAGAGAGAGGAGGAGCGG
ACATTCGTGCCCGTGCAAAACTGCAGCATGAGCCCTTACACGTGGCTTGC
ATCGGGAACTGGGGCGAGGTGGTGAGATTCCTCCTGGCGCAAGGCGTGGA
TGTGGAGTCACCCGACAAAACTGGCCGGCGGTGCCTGCACCTGTCCGTGG
AGAGAAACAGGCTGGAGGCTATCCGAGAGCTGCTCAATCACAGGTTGCTG
ATAGAGAGAGGAGGAGCGGACATTCGTGCCCGTGCAAAACTGCAGCATGA
GCCCTTACACGTGGCTTGCATCGGGAACTGGGGCGAGGTGGTGAGATTCC
TCCTGGCGCAAGGCGTGGATGTGGAGTCACCCGACAAAACTGGCCGGCGG
TGCCTGCACCTGTCCGTGGAGAGAAACAGGCTGGAGGCTATCCGAGAGCT
GCTCAATCACAGGTGCGATGTCGAAGCGACGTTGTCGGACGGGCTAACCC
GGCCGCTGCATATCGCCTGCCGCCGGGGATTCGAGAAGGCCGCAACACTT
TTGCTCAACCACCACGCAGACCACGCCGCTGTGGGACCCGATGGGCACAC
TGCCTTGCACATGGCGGCGAAGGAAGGGAAAGCGGCGATTGTGGAGGTGC
GATGTCGAAGCGACGTTGTCGGACGGGCTAACCCGGCCGCTGCATATCGC
CTGCCGCCGGGGATTCGAGAAGGCCGCAACACTTTTGCTCAACCACCACG
CAGACCACGCCGCTGTGGGACCCGATGGGCACACTGCCTTGCACATGGCG
GCGAAGGAAGGGAAAGCGGCGATTGTGGAGCTTCTGATTGATCGAAAGGC
GGATTTGCACGCCAAAGATCATCGCGGTCGCACCCCTCTGCAGTTCAGTA
GCAACCGCCGGTGCAAGGAGAGGTTAAGGGAGGCGGAGCGGAGGGAACAG
AAAGCTGCCGCCGAGCGCACGAAAGAGGCGGCGCAGCGAAGGCTAGAGAT
TGTTCTCAAGCGCAGGGAACAGGAGTTGCTCGACAGAGTTGACCTGAGAT
CCAGGGCGCGCATGGCCGGCGGTCTGTGACTTCTGATTGATCGAAAGGCG
GATTTGCACGCCAAAGATCATCGCGGTCGCACCCCTCTGCAGTTCAGTAG
CAACCGCCGGTGCAAGGAGAGGTTAAGGGAGGCGGAGCGGAGGGAACAGA
AAGCTGCCGCCGAGCGCACGAAAGAGGCGGCGCAGCGAAGGCTAGAGATT
GTTCTCAAGCGCAGGGAACAGGAGTTGCTCGACAGAGTTGACCTGAGATC
CAGGGCGCGCATGGCCGGCGGTCTGTGA back to top
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