mRNA_S-dermatodea_contig9054.17138.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9054.17138.1
Unique NamemRNA_S-dermatodea_contig9054.17138.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: D7FLE4_ECTSI (NUC173 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE4_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 2.500e-167
Identity = 267/307 (86.97%), Postives = 284/307 (92.51%), Query Frame = 1
Query:    1 RAQVLLELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAVARGDPAEAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAEREIKAKKARMSG 921
            RAQVLLELA+GL PSLD EA  LLYRS KPLV DD+SPQLQKRAYKVLLALC HRA FMSSP+NLP+VLELFTS LL+CHVSARVMRLQCLSRLAASFTP    QA+FLPAATLEVVLCTKDSNGRTRELAY VLV LAVARG+PA+  +TVVGGLAA+TPHARSAA+LAL +LQLEFGHFRSERWDARVADMVP+LT TMLLLLKEPSREVVKAVLGWLRVAVGGADRE+LRPMI DIV GVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIK LMPEQDKKLVAHMQTTAERE+KAKK R++G
Sbjct:  752 RAQVLLELASGLAPSLDQEATSLLYRSTKPLVLDDSSPQLQKRAYKVLLALCAHRADFMSSPENLPNVLELFTSSLLSCHVSARVMRLQCLSRLAASFTPEKDVQAKFLPAATLEVVLCTKDSNGRTRELAYNVLVLLAVARGNPADTARTVVGGLAASTPHARSAAVLALGYLQLEFGHFRSERWDARVADMVPELTATMLLLLKEPSREVVKAVLGWLRVAVGGADREVLRPMIADIVVGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKALMPEQDKKLVAHMQTTAERELKAKKTRLAG 1058          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A836CJA7_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA7_9STRA)

HSP 1 Score: 272 bits (695), Expect = 6.950e-79
Identity = 170/358 (47.49%), Postives = 211/358 (58.94%), Query Frame = 1
Query:   22 LAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAA-----------SFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAVARGDPA------------------EAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDAR------------VADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIK----------------DLMPEQDKKLVAHMQTTAEREIKAKKARMSGR 924
            +AA LVPSL++E   LLYR+ KPLV DD S QLQKRAY++LLALC  +   ++S + LPDVLELF + L  CHV+AR  RL+CL+ LA            SF     A A  +PA   EVVL TKDSNGRTRE AY +L        DP                   E +   +G L A TPH RSA +LAL+ LQ EFGHFRSE W               VA M P L  TMLLL +EPSREVVKAVLG+LRVAVGGADR +L P++ +I  GVM+G     + + RA+ ++VL+KLCRKFGFE                   +L+PE+D+KL+  MQ  AE+E+KAK AR + R
Sbjct:  990 MAAALVPSLEEECSALLYRACKPLVLDDVSAQLQKRAYRMLLALCASQGKLLASAERLPDVLELFVTSLSCCHVTARQSRLRCLTLLAXXXXXXXXXXXXSFDATNPAHAAAVPALLGEVVLSTKDSNGRTRESAYELLALAHYKCSDPCNMYELLXXXXXXXXXXXXEMVVATLGCLGAHTPHMRSAGVLALSRLQYEFGHFRSENWXXXXXXXXXXXXXESVAQMTPQLITTMLLLAREPSREVVKAVLGFLRVAVGGADRAVLEPLLLEITAGVMTGVPRATRLYLRARTKVVLAKLCRKFGFEXXXXXXXXXXXXXXXXXXXELVPEEDRKLIVGMQKAAEKELKAKAARHAKR 1347          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A7S2AHK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHK0_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.010e-68
Identity = 135/295 (45.76%), Postives = 191/295 (64.75%), Query Frame = 1
Query:    4 AQVLLELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAVARGDPAEAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAER 888
            A V+ +LA  LVP L  EA  LLYRS  PL+  D    LQKR+YKVLLALC+H+  F+ + D LP VL+L T  L+TCHVS+R MRL+CL  L  SF+   S Q   +P    EV++CTKDSN + RE+AY VL+ +A + G     ++ VV GLAA TPH RSAA+L LA L  EF        D  +  M+P +   +L+LLKE +REVVK+V+  +R++V   D + L+P++  I+ G+M  +    K+ FRAKIR++L +LCR +G+E +   +PEQD+KL++++Q   +R
Sbjct:  337 AVVMCDLALALVPCLGPEATELLYRSINPLLSLDTDLALQKRSYKVLLALCSHQTSFLLTEDRLPQVLDLVTGSLVTCHVSSRQMRLRCLRVLVGSFST--SDQTALIPRILAEVIVCTKDSNSKAREMAYEVLLGMAKSLGSFKGFVEMVVAGLAAKTPHMRSAAVLCLARLIFEFAGE-----DPELKGMIPPVLTCVLVLLKEKAREVVKSVVSLIRISVVLCDPQELQPIVPQILDGLMKWSDDT-KNRFRAKIRLILKRLCRLYGYEYVTSHLPEQDQKLISYLQKMTQR 623          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A4D9DHC5_9STRA (NUC173 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHC5_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.980e-63
Identity = 135/298 (45.30%), Postives = 188/298 (63.09%), Query Frame = 1
Query:    1 RAQVLLELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAG-FMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAVARG---DPAEAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTA 882
            +A +L ELA  LVP+LD+  + LLY+  +P VR D    LQKRAY+VL ALC H  G F+ S +   D++ L T  LLTCHVSAR MRL+ L  +  +      AQ + L +   EV+LC KD+NG+ R+ AY VL ++A+ +    D +E +K V+  LAA TPH RSAA+LALAHL  EFG    ER   R    +PDL  T+LLL ++P +EVVKAV+ ++R+ V     E L P++  ++  + +  +   K  FRAKI+I+L KLCRKFG+E I +L PE D++L+ H+Q  A
Sbjct:  723 KAVILCELALALVPTLDEAGVALLYKVVRPCVRLDRDLALQKRAYRVLGALCDHHRGSFLGSAETREDLVPLLTESLLTCHVSARHMRLRVLGSIVKTLDGTDQAQWEMLASLVGEVLLCLKDANGKARDAAYEVLTAMALVKSEEEDFSEFVKVVIAALAAETPHMRSAAVLALAHLIFEFGR---ERPALRAT--IPDLLSTVLLLGQDPVKEVVKAVVSFVRICVAACPPEGLEPLLPTVLETLFASNS---KVRFRAKIKIILKKLCRKFGYERILELAPETDRRLITHIQKQA 1012          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A1V9ZU24_9STRA (NUC173 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU24_9STRA)

HSP 1 Score: 215 bits (547), Expect = 3.420e-59
Identity = 120/310 (38.71%), Postives = 193/310 (62.26%), Query Frame = 1
Query:   16 LELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLA---VARGDPAEA-----IKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAEREIKAKKARMSG 921
            + +A  L+P +D   + LLYR  KP + DD  P +QKR+Y VL+ LC H   F +SPD L D++E  +  LLTC V A+ MRL+ L+++ ++      A   F+P+   E++LCTK++N + RE A+ +L+++A    ++G  + A     ++ V+GGLAA TPH RSA++L L+ L  EFG     R +  V + +PDL RT+L+LL E +REV+K+V+G++++ +    ++ L   +  I+ G++       K+ FRAK R ++ KLCRK+G+E I  L+PE D+KL+ H++ T ERE + K  +  G
Sbjct:  655 MSIAMALIPIIDATHVELLYRVVKPYLLDDTDPIMQKRSYAVLVQLCEHHPAFATSPDKLTDMIESLSESLLTCSVPAKKMRLRALNQIVSAMERTQHADVSFIPSLVGEIMLCTKEANAKAREAAFELLLAMARLVESKGAASGAGLMDFLQMVLGGLAARTPHMRSASVLCLSRLVFEFG-----RTEDAVRNAMPDLMRTVLMLLHEKAREVIKSVIGFMKLGIAILSKDALVEFLPSIIQGLLQWIGEA-KNRFRAKTRTIMMKLCRKYGYEYITSLVPEGDRKLITHIRKTKEREDRQKDKKHDG 958          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A1V9ZCT1_9STRA (NUC173 domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCT1_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.130e-57
Identity = 117/304 (38.49%), Postives = 187/304 (61.51%), Query Frame = 1
Query:   16 LELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLA-------VARGDPA-EAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAEREIKAK 903
            + +A  L+P +D   + LLYR  KP + DD  P +QKR+Y VL+ LC H   F +SPD L D++E  +  LLTC V A+ MRL+ L ++ ++      +   F+P    E++LCTK++N + RE A+ +L+++A        + G+   + ++ V GGLAA TPH RSA++L ++ L  EFG     R +  + + +PD+ RT+L+LL E +REVVK+V+G+L++ +    +E L   +  I+ G++       K  FRAK R ++ KLCRK+G+E I  L+PE+D+KL+ H++ T ERE + K
Sbjct:  559 MSIAMALIPIIDASQVELLYRVVKPYLLDDTDPIMQKRSYSVLVQLCEHHPAFTASPDKLTDMIESLSESLLTCSVPAKKMRLRALHQIISAMERVHHSDVSFVPNLVGEIMLCTKEANAKAREAAFELLLAMARLVESKSASSGEGLMQFVQMVFGGLAARTPHMRSASVLCMSRLVFEFG-----RTEDAIRNAMPDMMRTVLMLLHEKAREVVKSVIGFLKLGIAILTKEQLVEFLPSIIEGLLLWIGEA-KQRFRAKTRTIMMKLCRKYGYEYITSLVPEKDRKLITHIRKTKEREDRQK 856          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A448ZEL2_9STRA (NUC173 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEL2_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.660e-57
Identity = 126/309 (40.78%), Postives = 191/309 (61.81%), Query Frame = 1
Query:   13 LLELAAGLVPS--LDDEAIGLLYRSAKPLVRDDASP-QLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATL-EVVLCTKDSNGRTRELAYAVLVSLAVARGDPAEAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAEREIKAKKARMSGRG 927
            LL L+  LV S  L+D +I LLYRS KP++R D +P ++QKRAYKV+  +C     F++ P  L +V+EL +S   T  VSAR MRL+CL+ +   F    +A+ Q L ++ + E +LC KD N +TR+ AY +L+SL    GDPA  ++T+   + + TPH RSAA+ ALA L  E       + D  V D++P L +T+L+L  +PSREV K+++ ++RV+V  A  E L P++ DI+ G++     R KD FR KI+I++ KL + FG+E +   +P  D +L+ HM+  +ERE + K +R    G
Sbjct:  817 LLALSQALVISECLNDASISLLYRSLKPIIRTDETPSRIQKRAYKVMAEICKRYHSFIAEPTRLKEVMELLSSTSATSQVSARFMRLKCLALVVDGFEHSATAERQKLVSSLVGETLLCLKDYNAKTRDAAYKLLLSLQACHGDPAGFVRTIAAAVGSGTPHMRSAAVTALARLVFELS-----KDDQDVQDLLPALLKTVLVLSDDPSREVTKSMVVFVRVSVSAATPEQLEPLLPDILNGLLK--YHRGKDRFREKIKIIIKKLVKHFGYEALMPYVPPSDSRLLTHMRKLSEREKRRKLSRRKPHG 1118          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A484DUW2_BRELC (NUC173 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUW2_BRELC)

HSP 1 Score: 209 bits (532), Expect = 3.970e-57
Identity = 128/311 (41.16%), Postives = 190/311 (61.09%), Query Frame = 1
Query:   22 LAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRL-----AASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAV---ARGDPA----EAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAEREIKAKKARMS 918
            LA  L+  +DD  + LLYR  KP + DDA   +QKR+Y  L+A+C     F+S    L D+       LLTC V A+ MRL+ L+ L       S   G  A+ + +P    E++LCTK++NG+ RE A+ +LV++A+   AR DP     E IK V+GGLAA TPH RSAA++ L+ L  EFG     R D+ +A  +P+L +T+L+LL E +REV+K+V+G++++ +    ++ LR  + DI+ G++       K+ FRAK RI+L KLCRKFG E +  L+PE+D+ L+ H++ T ERE K K   M+
Sbjct:  719 LALALLSHVDDTNVELLYRVTKPYILDDADASMQKRSYAALVAICDSHPKFLSEKSQLQDLTRAICESLLTCSVPAKKMRLRVLAHLIRALQGQSANDGL-AEKELIPNLVGEIMLCTKEANGKAREAAFELLVAMAMLLRAR-DPQNGLMEFIKMVLGGLAAHTPHMRSAAVICLSRLVFEFG-----REDSAIAQAMPELLKTVLMLLHEKAREVIKSVIGFMKLGIAVLPKDQLRQFLPDIINGLLVWIG-ESKNRFRAKTRIILIKLCRKFGCEHVAALVPEEDRALIRHIKKTKEREDKKKSELMA 1021          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A067CS67_SAPPC (NUC173 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CS67_SAPPC)

HSP 1 Score: 209 bits (531), Expect = 4.980e-57
Identity = 114/300 (38.00%), Postives = 182/300 (60.67%), Query Frame = 1
Query:   16 LELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLA----VARGDPA----EAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAERE 891
            + +A  L+P +D   + LLYR  KP + DD  P +QKR+Y VL+ LC H   F +SPD L D++E  +  LLTC V A+ MRL+ L+++ ++          F+P    E++LCTK++N + RE A+ +L+++A         P     + ++ V+GGLAA TPH RSA++L ++ L  EFG     R +  +   +PDL RT+L+LL E +REV+K+V+G++++ +    ++ L   +  I+ G++       K  FRAK R ++ KLCRK+G+E I  L+P+ DKKL+ H++ T ERE
Sbjct:  658 MSIAMALIPIIDGSQVELLYRVVKPYLLDDTDPIMQKRSYSVLVQLCEHHPAFATSPDKLTDMIESLSESLLTCSVPAKKMRLRALNQIVSAMERTQHDDISFIPGLVGEIMLCTKEANAKAREAAFELLLAMARLVESKHSQPGAGLMDFLQMVLGGLAARTPHMRSASVLCMSRLVFEFG-----RTEDAIRSAMPDLMRTVLMLLHEKAREVIKSVIGFMKLGIAILSKDALVEFLPSIIEGLLKWIGEA-KQRFRAKTRTIMMKLCRKYGYEYIASLVPDGDKKLITHIRKTKERE 951          
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Match: A0A7S2SK72_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SK72_9STRA)

HSP 1 Score: 204 bits (519), Expect = 8.640e-57
Identity = 119/295 (40.34%), Postives = 177/295 (60.00%), Query Frame = 1
Query:   13 LLELAAGLVPS--LDDEAIGLLYRSAKPLVR-DDASPQLQKRAYKVLLALCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTPGFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAVARGDPAEAIKTVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRTMLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPRHKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAER 888
            LL LA  LV S  LDD +I LLYR+ +PL+R D+ S  +QKR+YKV+  +C     F+  P+ L ++ EL    + TC  ++R MRL+C+S +   F      Q + +P    EV+LC KDSN +TRE AY +LVS+A    +  E  +T++  L A TPH RSAA+ AL+ L  EF      R D  V   +P L  T+ +L  E +REV+K+V+G++RV V     + L P++  +V G+M     + K  FR+KI+I++ KL RK+G+ +I  L+PE D +L+ HM+  AE+
Sbjct:  128 LLGLAQALVKSGALDDASISLLYRAVRPLIRTDENSTSVQKRSYKVMAEICQRHKQFILDPERLGEMTELMVGSVFTCQTASRHMRLKCMSLMLEGFKSENREQMEVIPKIMGEVLLCLKDSNTKTREAAYGILVSMAQVHSNITEYFQTILAALGAQTPHMRSAAVQALSRLVFEFS-----RNDPVVQSFLPSLLETVCVLFDESAREVIKSVIGFVRVCVAAMSHDQLEPLLPGVVGGIMKYN--KGKGRFRSKIKIIMKKLVRKYGYTKITPLVPENDIRLLTHMRKLAEK 415          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9054.17138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLE4_ECTSI2.500e-16786.97NUC173 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CJA7_9STRA6.950e-7947.49Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S2AHK0_9STRA4.010e-6845.76Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9DHC5_9STRA3.980e-6345.30NUC173 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A1V9ZU24_9STRA3.420e-5938.71NUC173 domain-containing protein n=1 Tax=Achlya hy... [more]
A0A1V9ZCT1_9STRA1.130e-5738.49NUC173 domain-containing protein (Fragment) n=1 Ta... [more]
A0A448ZEL2_9STRA1.660e-5740.78NUC173 domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A484DUW2_BRELC3.970e-5741.16NUC173 domain-containing protein n=1 Tax=Bremia la... [more]
A0A067CS67_SAPPC4.980e-5738.00NUC173 domain-containing protein n=2 Tax=Saprolegn... [more]
A0A7S2SK72_9STRA8.640e-5740.34Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9054contigS-dermatodea_contig9054:684..2210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score511.5
Seed ortholog evalue2.8e-142
Seed eggNOG ortholog2880.D7FLE4
KEGG koko:K14794
EggNOG free text desc.maturation of SSU-rRNA
EggNOG OGsKOG1248@1,KOG1248@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size977
Cds size975
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9054.17138.1prot_S-dermatodea_contig9054.17138.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9054 684..2209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925383.0353-CDS-S-dermatodea_contig9054:683..8211622925383.0353-CDS-S-dermatodea_contig9054:683..821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9054 684..821 +
1694079896.2047114-CDS-S-dermatodea_contig9054:683..8211694079896.2047114-CDS-S-dermatodea_contig9054:683..821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9054 684..821 +
1622925383.0476344-CDS-S-dermatodea_contig9054:1082..17001622925383.0476344-CDS-S-dermatodea_contig9054:1082..1700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9054 1083..1700 +
1694079896.2156377-CDS-S-dermatodea_contig9054:1082..17001694079896.2156377-CDS-S-dermatodea_contig9054:1082..1700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9054 1083..1700 +
1622925383.0608828-CDS-S-dermatodea_contig9054:1990..22091622925383.0608828-CDS-S-dermatodea_contig9054:1990..2209Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9054 1991..2209 +
1694079896.2299638-CDS-S-dermatodea_contig9054:1990..22091694079896.2299638-CDS-S-dermatodea_contig9054:1990..2209Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9054 1991..2209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9054.17138.1

>prot_S-dermatodea_contig9054.17138.1 ID=prot_S-dermatodea_contig9054.17138.1|Name=mRNA_S-dermatodea_contig9054.17138.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=325bp
RAQVLLELAAGLVPSLDDEAIGLLYRSAKPLVRDDASPQLQKRAYKVLLA
LCTHRAGFMSSPDNLPDVLELFTSCLLTCHVSARVMRLQCLSRLAASFTP
GFSAQAQFLPAATLEVVLCTKDSNGRTRELAYAVLVSLAVARGDPAEAIK
TVVGGLAAATPHARSAAILALAHLQLEFGHFRSERWDARVADMVPDLTRT
MLLLLKEPSREVVKAVLGWLRVAVGGADRELLRPMIGDIVTGVMSGTTPR
HKDHFRAKIRIVLSKLCRKFGFEEIKDLMPEQDKKLVAHMQTTAEREIKA
KKARMSGRGGGGGDDGAPGGGRRME
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mRNA from alignment at S-dermatodea_contig9054:684..2210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9054.17138.1 ID=mRNA_S-dermatodea_contig9054.17138.1|Name=mRNA_S-dermatodea_contig9054.17138.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1527bp|location=Sequence derived from alignment at S-dermatodea_contig9054:684..2210+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCGCAAGTGTTGCTAGAGCTGGCGGCAGGCTTGGTCCCTTCACTGGA CGATGAGGCGATAGGACTGCTCTATCGGTCCGCGAAGCCGCTCGTTCGCG ACGACGCATCACCGCAACTGCAGAAGCGAGCATACAAGGCGAGGATACGA TACACGGATTGATTGCAGCAGGCTTATTAGCGTCTCATCAATTGTATCCG TGGCAAAAGTGGTTAACTTCGAACGCAAGGGCAACCCGGCCTGTGGTTTT TTCTATGCGCCTTTTATTCTAGACCCCGGCTCACCGCTCCGGCAACTGGC ACAAGGCCAACCCTGTTTTTATCCCCATCAACCCTCGTAACGCAACGCTC CCTCCAACCCCCACACACACACCCCATGTTTGACAATGGTCCCGATCAGG TGCTTCTGGCCCTCTGTACCCACCGAGCCGGCTTCATGTCGTCGCCCGAC AACCTACCGGACGTCCTGGAGCTCTTCACCTCATGCCTACTGACGTGTCA CGTGTCGGCGAGGGTGATGCGCCTGCAGTGCCTCTCCCGCCTTGCCGCAT CCTTCACCCCTGGCTTCTCCGCCCAAGCCCAGTTCTTGCCGGCCGCTACC CTGGAAGTTGTCCTGTGCACCAAGGACTCCAACGGGAGGACTCGGGAACT CGCGTACGCCGTTCTCGTGTCGCTCGCTGTCGCGCGTGGCGACCCTGCCG AGGCCATCAAGACCGTGGTCGGGGGATTAGCGGCCGCCACCCCACACGCG CGCTCCGCCGCGATTCTGGCGCTCGCCCACCTCCAGCTGGAGTTCGGGCA CTTCAGGAGCGAGCGCTGGGATGCTCGGGTGGCAGATATGGTGCCGGACC TCACACGGACGATGTTGCTGCTGCTGAAGGAGCCCTCCAGAGAGGTGGTG AAGGCGGTGCTGGGATGGCTGAGGGTTGCGGTGGGCGGAGCGGACCGGGA GTTGCTGCGGCCGATGATCGGGGATATTGTTACCGGGGTGATGTCGGGTA CCACTCCGAGGCACAAGGTGGGGAGGGCGCGAACGAACCACCGCTGCGTA TCTAGGCTAGTTTTGGTCTTGGAGATGCCTTTATTTTGTACGAGGTGTGA TGGAGGTAGGAAGTATTTTCTGGCATGGTGCAGTGTGCACTCCTCTGGTA ACAATTTCCGCGGAAGAGTAAATATGCATGATGATATCGCGTTTATTTCT TCGCGTGTAGGTTGGCCGTTGCAATTGAAACGGCGATGAGTTAAGCTCTG CTCCGTCCGATCCCTACTCCCTCCGTTCCGTTTCTCACAAACGCCCCCTC GTGACAGGACCACTTCCGTGCCAAGATTCGCATCGTTCTTTCGAAGCTCT GCCGCAAGTTCGGGTTCGAGGAGATCAAGGATCTGATGCCAGAACAAGAC AAAAAGCTAGTCGCGCACATGCAAACCACCGCCGAGCGCGAGATCAAGGC AAAGAAGGCTCGCATGTCCGGCCGGGGCGGGGGTGGCGGCGACGATGGCG CGCCCGGCGGTGGTAGGCGGATGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9054:684..2210+

>mRNA_S-dermatodea_contig9054.17138.1 ID=mRNA_S-dermatodea_contig9054.17138.1|Name=mRNA_S-dermatodea_contig9054.17138.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at S-dermatodea_contig9054:684..2210+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCGCAAGTGTTGCTAGAGCTGGCGGCAGGCTTGGTCCCTTCACTGGA
CGATGAGGCGATAGGACTGCTCTATCGGTCCGCGAAGCCGCTCGTTCGCG
ACGACGCATCACCGCAACTGCAGAAGCGAGCATACAAGAGGGCGCAAGTG
TTGCTAGAGCTGGCGGCAGGCTTGGTCCCTTCACTGGACGATGAGGCGAT
AGGACTGCTCTATCGGTCCGCGAAGCCGCTCGTTCGCGACGACGCATCAC
CGCAACTGCAGAAGCGAGCATACAAGGTGCTTCTGGCCCTCTGTACCCAC
CGAGCCGGCTTCATGTCGTCGCCCGACAACCTACCGGACGTCCTGGAGCT
CTTCACCTCATGCCTACTGACGTGTCACGTGTCGGCGAGGGTGATGCGCC
TGCAGTGCCTCTCCCGCCTTGCCGCATCCTTCACCCCTGGCTTCTCCGCC
CAAGCCCAGTTCTTGCCGGCCGCTACCCTGGAAGTTGTCCTGTGCACCAA
GGACTCCAACGGGAGGACTCGGGAACTCGCGTACGCCGTTCTCGTGTCGC
TCGCTGTCGCGCGTGGCGACCCTGCCGAGGCCATCAAGACCGTGGTCGGG
GGATTAGCGGCCGCCACCCCACACGCGCGCTCCGCCGCGATTCTGGCGCT
CGCCCACCTCCAGCTGGAGTTCGGGCACTTCAGGAGCGAGCGCTGGGATG
CTCGGGTGGCAGATATGGTGCCGGACCTCACACGGACGATGTTGCTGCTG
CTGAAGGAGCCCTCCAGAGAGGTGGTGAAGGCGGTGCTGGGATGGCTGAG
GGTTGCGGTGGGCGGAGCGGACCGGGAGTTGCTGCGGCCGATGATCGGGG
ATATTGTTACCGGGGTGATGTCGGGTACCACTCCGAGGCACAAGGTGCTT
CTGGCCCTCTGTACCCACCGAGCCGGCTTCATGTCGTCGCCCGACAACCT
ACCGGACGTCCTGGAGCTCTTCACCTCATGCCTACTGACGTGTCACGTGT
CGGCGAGGGTGATGCGCCTGCAGTGCCTCTCCCGCCTTGCCGCATCCTTC
ACCCCTGGCTTCTCCGCCCAAGCCCAGTTCTTGCCGGCCGCTACCCTGGA
AGTTGTCCTGTGCACCAAGGACTCCAACGGGAGGACTCGGGAACTCGCGT
ACGCCGTTCTCGTGTCGCTCGCTGTCGCGCGTGGCGACCCTGCCGAGGCC
ATCAAGACCGTGGTCGGGGGATTAGCGGCCGCCACCCCACACGCGCGCTC
CGCCGCGATTCTGGCGCTCGCCCACCTCCAGCTGGAGTTCGGGCACTTCA
GGAGCGAGCGCTGGGATGCTCGGGTGGCAGATATGGTGCCGGACCTCACA
CGGACGATGTTGCTGCTGCTGAAGGAGCCCTCCAGAGAGGTGGTGAAGGC
GGTGCTGGGATGGCTGAGGGTTGCGGTGGGCGGAGCGGACCGGGAGTTGC
TGCGGCCGATGATCGGGGATATTGTTACCGGGGTGATGTCGGGTACCACT
CCGAGGCACAAGGACCACTTCCGTGCCAAGATTCGCATCGTTCTTTCGAA
GCTCTGCCGCAAGTTCGGGTTCGAGGAGATCAAGGATCTGATGCCAGAAC
AAGACAAAAAGCTAGTCGCGCACATGCAAACCACCGCCGAGCGCGAGATC
AAGGCAAAGAAGGCTCGCATGTCCGGCCGGGGCGGGGGTGGCGGCGACGA
TGGCGCGCCCGGCGGTGGTAGGCGGATGGAGGACCACTTCCGTGCCAAGA
TTCGCATCGTTCTTTCGAAGCTCTGCCGCAAGTTCGGGTTCGAGGAGATC
AAGGATCTGATGCCAGAACAAGACAAAAAGCTAGTCGCGCACATGCAAAC
CACCGCCGAGCGCGAGATCAAGGCAAAGAAGGCTCGCATGTCCGGCCGGG
GCGGGGGTGGCGGCGACGATGGCGCGCCCGGCGGTGGTAGGCGGATGGAG
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