mRNA_S-dermatodea_contig90526.17136.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90526.17136.1
Unique NamemRNA_S-dermatodea_contig90526.17136.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90526.17136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90526contigS-dermatodea_contig90526:36..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size456
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.760629-CDS-S-dermatodea_contig90526:35..4071622925382.760629-CDS-S-dermatodea_contig90526:35..407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90526 36..407 +
1694079896.0650322-CDS-S-dermatodea_contig90526:35..4071694079896.0650322-CDS-S-dermatodea_contig90526:35..407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90526 36..407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.7702324-UTR-S-dermatodea_contig90526:407..4901622925382.7702324-UTR-S-dermatodea_contig90526:407..490Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90526 408..490 +
1694079896.075775-UTR-S-dermatodea_contig90526:407..4901694079896.075775-UTR-S-dermatodea_contig90526:407..490Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig90526 408..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90526.17136.1prot_S-dermatodea_contig90526.17136.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90526 36..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90526.17136.1

>prot_S-dermatodea_contig90526.17136.1 ID=prot_S-dermatodea_contig90526.17136.1|Name=mRNA_S-dermatodea_contig90526.17136.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
PARDAFRVPGRRSLLVARVLLARSDIFLDGKLLPSHARPIEQLFKSYRRG
SGVSGKGISWLSSWCPALGTPGRRRSVSGGSFLSSPPPLLATTFLNFGGA
ESEKKSKRGGDLLVFAGEIRPAL*
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mRNA from alignment at S-dermatodea_contig90526:36..490+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90526.17136.1 ID=mRNA_S-dermatodea_contig90526.17136.1|Name=mRNA_S-dermatodea_contig90526.17136.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at S-dermatodea_contig90526:36..490+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCCCGGGACGCCTTTAGGGTTCCGGGGCGCCGATCATTACTCGTCGC
AAGGGTTTTATTAGCCCGCTCTGATATTTTTTTAGACGGCAAGCTCTTGC
CTTCTCACGCGCGACCGATAGAGCAGCTCTTTAAAAGTTACCGCCGCGGG
TCTGGCGTGTCGGGCAAAGGGATAAGTTGGTTGAGTAGTTGGTGCCCTGC
CTTGGGCACGCCCGGACGCAGAAGAAGCGTTTCAGGGGGGTCCTTCCTCT
CCTCTCCTCCTCCGCTGCTTGCTACAACTTTTCTTAATTTTGGGGGGGCA
GAAAGTGAGAAGAAGAGCAAGAGAGGAGGGGATTTATTGGTGTTTGCCGG
TGAGATTCGACCAGCATTATAATAGTATAGTAGTACAGTAGCGCAAAAAG
TGTCGGAATGAAGAAAAAAATGAGTTTGGAGAGGGACGTCGAGACTGGAT
GGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig90526:36..490+

>mRNA_S-dermatodea_contig90526.17136.1 ID=mRNA_S-dermatodea_contig90526.17136.1|Name=mRNA_S-dermatodea_contig90526.17136.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig90526:36..490+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCCCGGGACGCCTTTAGGGTTCCGGGGCGCCGATCATTACTCGTCGC
AAGGGTTTTATTAGCCCGCTCTGATATTTTTTTAGACGGCAAGCTCTTGC
CTTCTCACGCGCGACCGATAGAGCAGCTCTTTAAAAGTTACCGCCGCGGG
TCTGGCGTGTCGGGCAAAGGGATAAGTTGGTTGAGTAGTTGGTGCCCTGC
CTTGGGCACGCCCGGACGCAGAAGAAGCGTTTCAGGGGGGTCCTTCCTCT
CCTCTCCTCCTCCGCTGCTTGCTACAACTTTTCTTAATTTTGGGGGGGCA
GAAAGTGAGAAGAAGAGCAAGAGAGGAGGGGATTTATTGGTGTTTGCCGG
TGAGATTCGACCAGCATTATAACCCGCCCGGGACGCCTTTAGGGTTCCGG
GGCGCCGATCATTACTCGTCGCAAGGGTTTTATTAGCCCGCTCTGATATT
TTTTTAGACGGCAAGCTCTTGCCTTCTCACGCGCGACCGATAGAGCAGCT
CTTTAAAAGTTACCGCCGCGGGTCTGGCGTGTCGGGCAAAGGGATAAGTT
GGTTGAGTAGTTGGTGCCCTGCCTTGGGCACGCCCGGACGCAGAAGAAGC
GTTTCAGGGGGGTCCTTCCTCTCCTCTCCTCCTCCGCTGCTTGCTACAAC
TTTTCTTAATTTTGGGGGGGCAGAAAGTGAGAAGAAGAGCAAGAGAGGAG
GGGATTTATTGGTGTTTGCCGGTGAGATTCGACCAGCATTATAA
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