mRNA_S-dermatodea_contig9051.17135.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9051.17135.1
Unique NamemRNA_S-dermatodea_contig9051.17135.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9051.17135.1 vs. uniprot
Match: A0A6H5L4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.110e-8
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 2 
Query:    2 AAGAAMRVESVFRRAKTVVLEVLLNT-CPGRPATMVPAPKMETETNEERSGQGHKAVDADEQVSLTSRQRATSGGDLQAAYALRRAQQTFVDFLLTDPEDEALWAGML 322
            AA A  RVE VFRRAK   LE LL++ CP   +    +          R  +   + +A    S T  + +      QAA+   RAQQ  VDFLL+DP+DEAL  G+L
Sbjct:  347 AAEAVSRVEDVFRRAKAAALEALLHSSCPPGLSAATTSTTTVVSHATARESEPKPSAEAKASGSTTGSKESAKSTVSQAAHTSHRAQQAIVDFLLSDPDDEALLEGIL 454
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9051.17135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4X7_9PHAE6.110e-838.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9051contigS-dermatodea_contig9051:6960..8445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9051.17135.1prot_S-dermatodea_contig9051.17135.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9051 6976..8445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.6268992-UTR-S-dermatodea_contig9051:6959..69751622925382.6268992-UTR-S-dermatodea_contig9051:6959..6975Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9051 6960..6975 +
1694079895.9853396-UTR-S-dermatodea_contig9051:6959..69751694079895.9853396-UTR-S-dermatodea_contig9051:6959..6975Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9051 6960..6975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.6371176-CDS-S-dermatodea_contig9051:6975..70081622925382.6371176-CDS-S-dermatodea_contig9051:6975..7008Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 6976..7008 +
1694079895.994297-CDS-S-dermatodea_contig9051:6975..70081694079895.994297-CDS-S-dermatodea_contig9051:6975..7008Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 6976..7008 +
1622925382.646824-CDS-S-dermatodea_contig9051:7722..79351622925382.646824-CDS-S-dermatodea_contig9051:7722..7935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 7723..7935 +
1694079896.0036783-CDS-S-dermatodea_contig9051:7722..79351694079896.0036783-CDS-S-dermatodea_contig9051:7722..7935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 7723..7935 +
1622925382.656314-CDS-S-dermatodea_contig9051:8376..84451622925382.656314-CDS-S-dermatodea_contig9051:8376..8445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 8377..8445 +
1694079896.0120006-CDS-S-dermatodea_contig9051:8376..84451694079896.0120006-CDS-S-dermatodea_contig9051:8376..8445Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 8377..8445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9051.17135.1

>prot_S-dermatodea_contig9051.17135.1 ID=prot_S-dermatodea_contig9051.17135.1|Name=mRNA_S-dermatodea_contig9051.17135.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MRVESVFRRAKTVVLEVLLNTCPGRPATMVPAPKMETETNEERSGQGHKA
VDADEQVSLTSRQRATSGGDLQAAYALRRAQQTFVDFLLTDPEDEALWAG
MLHYT
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mRNA from alignment at S-dermatodea_contig9051:6960..8445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9051.17135.1 ID=mRNA_S-dermatodea_contig9051.17135.1|Name=mRNA_S-dermatodea_contig9051.17135.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1486bp|location=Sequence derived from alignment at S-dermatodea_contig9051:6960..8445+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAGCGGGGGCGGCTATGAGAGTGGAAAGCGTCTTTCGGCGGGCGAAGG
TGTGCAATCATTGCAGGGTTTTCATTGCGGGCTCGATTTTGGTCGTGGTT
GGGGGTTGGGGGTTGGTGTTTCTTTTGGGGTTGATGTTGGGGTGGGTTGG
AAAAATTCTCCGCCGGAGGGACGTTGTGGGAGTGTTTTGTCGCGTTCGTC
GGTGCGCTGCTGCCGTGTAGACATGTAAGAGGCAGGGGCGTCCAAGAGGG
GTGGTTGGGAAGGTCTGGGATTGCGCGTTGTTTTGCAGGCTTCTGCGTTT
TGAGCCGGGATGCCGTCTCGGGTTGGTGCACTTTTAGAGTGCAGTATTTT
AATGCGTGTACAGACACAAGAGGAATCGGCGAGCTGCAGGAGTCCTGGCC
CCAATCCCCGATAAAGATAAGCATGTACCGGGGAGAGATGGGATCATCCC
TCAGGTCCAGAGACGGGATTCAGATAAGGCCTGCCAGTCGTTCATGAGCG
TCAAAGACAAACCCTCCCCCAGTTTGCATGCACAAACCCGCTACGGCTAG
CACATGCGCCCACCAACGTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCGTATCCACTCTCCCCGCTCCTTCT
TTTTCTTTTGTTGTTTTCACCCCCCGCGCGCGTAATTGCATCGCATCTTT
GTCGCTCTTTTACGTTGTGTATCTTGCCATCGCCCCCGAACTGATCACGC
TTCTACAACCAAGACCGTGGTGTTAGAAGTTCTCCTCAACACCTGCCCCG
GTCGGCCGGCTACCATGGTGCCGGCCCCGAAAATGGAGACCGAGACTAAT
GAAGAGAGGTCAGGGCAAGGGCACAAGGCAGTCGATGCCGACGAGCAGGT
ATCACTGACGTCGAGACAACGCGCGACGAGCGGCGGCGACCTGCAGGCGG
CCTACGCGTTGCGTCGAGCACAGCAGGTGATGGAGTGGGGCAAAGGGGAA
GCGGTGAGGCTTTGAATCCGTTTTTTTCCCCATTTGAGCACGAAGGTACT
CAAGGTTGGGGGCGGTCATGTTGCTTGTTTGGCGAGAGGGGGGGGGGAGG
AGGGGTCAGTGGAGGGAGCCTCTATGCTCTCGTTTACCGCACAGCAACGT
TCGGGTGGCGAAGCCGGATATGTTGTTGGGAAGGGGTTTCGATGGTCCAT
GTTAATCGAAAGCGTGACCGTCAATCATAGCACGTAAGTAGTCGTTCCTC
CCCAAACCCTAATCCGACGCGACCGTGGCGAGCCACAAACAAGAGGATTG
ATACTTGGCATATACTTGGTGCAACACTAGCATTTAACACGTCCCGTGGG
TTCGGCCGCTCCCTTTTCGCCCTCCTCCCTGCTTACGACCCGTCACTCCC
CACTCCCCCCGCCTCAGACATTTGTGGACTTCCTGCTGACCGACCCCGAA
GACGAGGCGTTATGGGCGGGGATGCTCCACTACACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9051:6960..8445+

>mRNA_S-dermatodea_contig9051.17135.1 ID=mRNA_S-dermatodea_contig9051.17135.1|Name=mRNA_S-dermatodea_contig9051.17135.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig9051:6960..8445+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAGTGGAAAGCGTCTTTCGGCGGGCGAAGATGAGAGTGGAAAGCGT
CTTTCGGCGGGCGAAGACCGTGGTGTTAGAAGTTCTCCTCAACACCTGCC
CCGGTCGGCCGGCTACCATGGTGCCGGCCCCGAAAATGGAGACCGAGACT
AATGAAGAGAGGTCAGGGCAAGGGCACAAGGCAGTCGATGCCGACGAGCA
GGTATCACTGACGTCGAGACAACGCGCGACGAGCGGCGGCGACCTGCAGG
CGGCCTACGCGTTGCGTCGAGCACAGCAGACCGTGGTGTTAGAAGTTCTC
CTCAACACCTGCCCCGGTCGGCCGGCTACCATGGTGCCGGCCCCGAAAAT
GGAGACCGAGACTAATGAAGAGAGGTCAGGGCAAGGGCACAAGGCAGTCG
ATGCCGACGAGCAGGTATCACTGACGTCGAGACAACGCGCGACGAGCGGC
GGCGACCTGCAGGCGGCCTACGCGTTGCGTCGAGCACAGCAGACATTTGT
GGACTTCCTGCTGACCGACCCCGAAGACGAGGCGTTATGGGCGGGGATGC
TCCACTACACCACATTTGTGGACTTCCTGCTGACCGACCCCGAAGACGAG
GCGTTATGGGCGGGGATGCTCCACTACACC
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