mRNA_S-dermatodea_contig9051.17134.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9051.17134.1
Unique NamemRNA_S-dermatodea_contig9051.17134.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9051.17134.1 vs. uniprot
Match: A0A6H5L4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.260e-8
Identity = 40/104 (38.46%), Postives = 52/104 (50.00%), Query Frame = 1 
Query:  157 RVADDSCEGLEWVRAHLAEVLLCKS------------------------DTAVAHTLGCLETWRTTRFAALCEGENAFLLSVATPPLEIR----PPSPRPANGG 384
            R  ++  EG+EW+R+ L E L  ++                           V HTL  +++WR  R AALCEGENAFLLSVA P L  R    P SPRP++ G
Sbjct:  188 RPKEEEEEGMEWLRSSLGEALSGEAVGXXXXXXXXXXXXXXXXXXXXXXXAVVNHTLRAIQSWRAKRSAALCEGENAFLLSVAPPSLPQRRRRLPFSPRPSSNG 291
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9051.17134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4X7_9PHAE2.260e-838.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9051contigS-dermatodea_contig9051:5606..6837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size440
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9051.17134.1prot_S-dermatodea_contig9051.17134.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9051 5606..6837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.5743146-CDS-S-dermatodea_contig9051:5605..56471622925382.5743146-CDS-S-dermatodea_contig9051:5605..5647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 5606..5647 +
1694079895.9568307-CDS-S-dermatodea_contig9051:5605..56471694079895.9568307-CDS-S-dermatodea_contig9051:5605..5647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 5606..5647 +
1622925382.5844526-CDS-S-dermatodea_contig9051:6191..64181622925382.5844526-CDS-S-dermatodea_contig9051:6191..6418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 6192..6418 +
1694079895.9668987-CDS-S-dermatodea_contig9051:6191..64181694079895.9668987-CDS-S-dermatodea_contig9051:6191..6418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 6192..6418 +
1622925382.5940998-CDS-S-dermatodea_contig9051:6668..68371622925382.5940998-CDS-S-dermatodea_contig9051:6668..6837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 6669..6837 +
1694079895.976374-CDS-S-dermatodea_contig9051:6668..68371694079895.976374-CDS-S-dermatodea_contig9051:6668..6837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 6669..6837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9051.17134.1

>prot_S-dermatodea_contig9051.17134.1 ID=prot_S-dermatodea_contig9051.17134.1|Name=mRNA_S-dermatodea_contig9051.17134.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
EVSEKAILQWRSWLDELHRRIHRCLDRVEAAAAAASEARVMTDKERHEEE
EKRVADDSCEGLEWVRAHLAEVLLCKSDTAVAHTLGCLETWRTTRFAALC
EGENAFLLSVATPPLEIRPPSPRPANGGAYAPPEKIAAAAADKALG
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mRNA from alignment at S-dermatodea_contig9051:5606..6837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9051.17134.1 ID=mRNA_S-dermatodea_contig9051.17134.1|Name=mRNA_S-dermatodea_contig9051.17134.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1232bp|location=Sequence derived from alignment at S-dermatodea_contig9051:5606..6837+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGTGTCAGAAAAGGCGATTTTACAGTGGCGGAGTTGGCTGGTACGCGT
TGCACCGACAAAGGGTTGATTCCGGGGCTTCACTGCTGTTTCGCTCATGC
CATGAGGAGGGCAGGGGGATACTGTAGTGTGCCGAGGATTGATTCAAACA
CTATCCGTGCCACATAGGACCACCTTGTGGCACCTTAGCAATAATAGGGG
CCCTGGGTTGCTTTCGTCCTCTGATTATTTGTGAACGTCTCTAGCGTTGT
TGGATTGTGTCGTGGAAGAAAATCGCATGTTCTGCCTGGTTCTTCAGGGG
ACGGTTTTTCGTTATTCATGTATTAGGGGTGAACCAACCGGTTGCGCGGG
TGACCCATTCAGGTAGAAAGAGCTGCGCACCTGGTGCATTGGACGAGCCA
ATTCGTCACGAGGATTGCGAAGTGCGCAGAATGCTGCGATACGACGAGCT
CTTTCCACACTCTCATTTGATCCCTTATCGCATTTTCGTTCGAACGCGTG
CGAAGCATGCCAGCGATTCAGCTGTGGTTGCAATTCTCAACCAGGGGATT
TTCCCGCACTGTCCACCCGTATCATTCTACCAGCAGGACGAGCTTCATCG
ACGCATTCACCGATGCCTAGACCGCGTAGAAGCAGCCGCTGCTGCCGCAT
CCGAGGCGCGGGTTATGACGGACAAAGAGCGACACGAGGAGGAAGAGAAA
AGGGTAGCGGACGATTCTTGCGAAGGACTGGAGTGGGTGCGGGCGCACCT
GGCGGAGGTTCTCCTATGCAAGAGCGACACCGCCGTAGCTCACACGCTCG
GTTGCCTCGAAACGTGGGTTGCTTCGTAATCCCAATCGCCTCCGATAATA
CAGGGTCTACCCGAGGGCCCTTACGATGCAAAATCACTTGAGGCCAGAGT
TCGCCCACTAAATAGATAGAATAGATAGAACCGTCGTTTCCTCCCCTACC
CCCCTACCCCCCTACCCCCTACCCCCTACCCCCGCCTTAAAACAAATTAT
TTCGTGTTGAGTGATCACCCCTCCCCCCCCTCGATCATCCATTCCTCCCT
CCAAACTCCGTAGCTGGCGAACGACGCGCTTCGCGGCGCTCTGCGAGGGC
GAAAACGCCTTCCTCCTCTCCGTCGCGACCCCTCCCCTCGAAATTCGTCC
ACCTTCCCCCCGCCCTGCAAATGGCGGCGCCTACGCCCCTCCCGAAAAAA
TCGCGGCGGCGGCTGCCGATAAGGCTCTGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9051:5606..6837+

>mRNA_S-dermatodea_contig9051.17134.1 ID=mRNA_S-dermatodea_contig9051.17134.1|Name=mRNA_S-dermatodea_contig9051.17134.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig9051:5606..6837+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGTGTCAGAAAAGGCGATTTTACAGTGGCGGAGTTGGCTGGAAGTGTC
AGAAAAGGCGATTTTACAGTGGCGGAGTTGGCTGGACGAGCTTCATCGAC
GCATTCACCGATGCCTAGACCGCGTAGAAGCAGCCGCTGCTGCCGCATCC
GAGGCGCGGGTTATGACGGACAAAGAGCGACACGAGGAGGAAGAGAAAAG
GGTAGCGGACGATTCTTGCGAAGGACTGGAGTGGGTGCGGGCGCACCTGG
CGGAGGTTCTCCTATGCAAGAGCGACACCGCCGTAGCTCACACGCTCGGT
TGCCTCGAAACGACGAGCTTCATCGACGCATTCACCGATGCCTAGACCGC
GTAGAAGCAGCCGCTGCTGCCGCATCCGAGGCGCGGGTTATGACGGACAA
AGAGCGACACGAGGAGGAAGAGAAAAGGGTAGCGGACGATTCTTGCGAAG
GACTGGAGTGGGTGCGGGCGCACCTGGCGGAGGTTCTCCTATGCAAGAGC
GACACCGCCGTAGCTCACACGCTCGGTTGCCTCGAAACCTGGCGAACGAC
GCGCTTCGCGGCGCTCTGCGAGGGCGAAAACGCCTTCCTCCTCTCCGTCG
CGACCCCTCCCCTCGAAATTCGTCCACCTTCCCCCCGCCCTGCAAATGGC
GGCGCCTACGCCCCTCCCGAAAAAATCGCGGCGGCGGCTGCCGATAAGGC
TCTGGGGCTGGCGAACGACGCGCTTCGCGGCGCTCTGCGAGGGCGAAAAC
GCCTTCCTCCTCTCCGTCGCGACCCCTCCCCTCGAAATTCGTCCACCTTC
CCCCCGCCCTGCAAATGGCGGCGCCTACGCCCCTCCCGAAAAAATCGCGG
CGGCGGCTGCCGATAAGGCTCTGGGG
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