mRNA_S-dermatodea_contig9051.17133.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9051.17133.1
Unique NamemRNA_S-dermatodea_contig9051.17133.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9051.17133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9051contigS-dermatodea_contig9051:2678..4574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size350
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9051.17133.1prot_S-dermatodea_contig9051.17133.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9051 2693..4574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.4962955-UTR-S-dermatodea_contig9051:2677..26921622925382.4962955-UTR-S-dermatodea_contig9051:2677..2692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9051 2678..2692 +
1694079895.917521-UTR-S-dermatodea_contig9051:2677..26921694079895.917521-UTR-S-dermatodea_contig9051:2677..2692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9051 2678..2692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.514193-CDS-S-dermatodea_contig9051:2692..27951622925382.514193-CDS-S-dermatodea_contig9051:2692..2795Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 2693..2795 +
1694079895.9286141-CDS-S-dermatodea_contig9051:2692..27951694079895.9286141-CDS-S-dermatodea_contig9051:2692..2795Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 2693..2795 +
1622925382.5308623-CDS-S-dermatodea_contig9051:3749..38521622925382.5308623-CDS-S-dermatodea_contig9051:3749..3852Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 3750..3852 +
1694079895.9376833-CDS-S-dermatodea_contig9051:3749..38521694079895.9376833-CDS-S-dermatodea_contig9051:3749..3852Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 3750..3852 +
1622925382.5451155-CDS-S-dermatodea_contig9051:4447..45741622925382.5451155-CDS-S-dermatodea_contig9051:4447..4574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 4448..4574 +
1694079895.9469044-CDS-S-dermatodea_contig9051:4447..45741694079895.9469044-CDS-S-dermatodea_contig9051:4447..4574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 4448..4574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9051.17133.1

>prot_S-dermatodea_contig9051.17133.1 ID=prot_S-dermatodea_contig9051.17133.1|Name=mRNA_S-dermatodea_contig9051.17133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MLLPRLLLASGLSRSCVNVTIARLDMLGRTADNTDELYQYLISPDAQGTW
DMGSSMQSTKSLRDKLSRRVRAYLRCYDGHDGDGDGVSTADKGSVKDGDG
LFVKWLAEPLR
back to top

mRNA from alignment at S-dermatodea_contig9051:2678..4574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9051.17133.1 ID=mRNA_S-dermatodea_contig9051.17133.1|Name=mRNA_S-dermatodea_contig9051.17133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1897bp|location=Sequence derived from alignment at S-dermatodea_contig9051:2678..4574+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCACATCCCGAAGATGCTCTTGCCCCGTCTTCTGCTGGCCTCGGGGCT
TTCCCGGAGCTGCGTCAACGTGACTATTGCGAGGCTGGACATGCTGGGCC
GAACCGCGGACAACACTGGTGCGCGTGCCATGCTTTCTCCGCCCTATTAT
GTCGATGCAATTGACTGCCTAATGCGATGTTTCTTGTGAGCTAAGCGCGG
CTGTCGTTTTGAGTGACGCACCTTATTTCCATAGCCCCCGAAAGACACAT
GGTACCGCCTAAAGGCATAGTAATTTTTCAACATCCGGTAAGCCGTGGGA
TTGATGCGTCCTTTTTGTTGGAGCAAGGTGGCACAGGCTATCCACCCTAA
TGGAACGTGAGTTTTGCATAGCGCTACTGTTCGAGAACCTCAAGTGTTTT
TGATGATGCAACTTTGGAGACGGTACTGCAGCCGTAGATGTGACACATCG
GCAGTGGGGTCGCACGATGTGACTTTCCTTGTTTCCTCGGACCAACCGAA
ATGATGTATTGTCCTGTACGCCCGACAAATGTTTGGTCACACTTGGTTGT
AAGTTGCTGCCCTGAGTTCCGCGCAAGCAAAGTCGTGGAGCAACGCCGCT
GCACTGAGTATTCTCGCTGTTTTGGCTAGATTTGGCGAGATGTCTTGACA
AGGTTTCGGCGGGCCGTTGGTGGTGGCAGTACGCGGTGATGACGCGAGCA
ATGGCTTATACTGACCAATCCAGCCGGACTCAAGTTTTACCTGTAGGCGA
GTAGCAGTAATGAGATAAAAATACAAAAGTCGCGGGATCAGGCACAGCTC
CACACCCAGCACAGTAGATCACCCCATAGAAGCTCTCATCACAACGGCGG
TGAGCGAGCCGGGAGCTAGTGACAATATCCGACGAGTGTGAGGTGATCGC
TGGTCTTTGGTAGAAAAGTCTGCTTGACTTATACATCTCGCGGTTACCGT
GTGGAAGGTCCTATCTTGATTCCGCAGTTTTCCGTCGAATCTTTTTTGGA
CAAACGACTTTATGCTACCCCCCGCCGCCACCGCCGCCGCCGCGAACCGT
TCCCTCTTACGACGGACGTCAGACGAGCTGTACCAGTACCTGATATCGCC
GGATGCGCAGGGCACCTGGGACATGGGCAGCAGTATGCAGTCTACCAAAA
GCCTGAGGGACAAGCTATCGCGGAGGTGAGAAAGAGGGCAACGGAAACTC
ATCACTACTCAAGAGCTGATATCCGTGTGACTCCCGATATTTGGAGTACT
ATTCAGAGTAGTCACCCGAGTCACCCGCACAAGCACGCGTCTATTCCTCG
CCGAAAATGGTGCGGAATTCTTTTTCGCAGAGAAATCGGTCGCGGGGCAC
CACTTGACCGTTGAGCTGAGGAGCCCCCTAATAATTGATTATCAGGGAGG
GTAAAAGAGTGCACGAGGCCCCCCCCCCACCCGCTGTTTGTTGCTGGTCG
GTGAGGTAGTCGCATTCTTTATTTTACTGCCCGTCCCTTGTTCCTCTCCG
AAAAAGAAAATCGCCGCGCTCCCTCGCTAGTCTACCCGCGATACGCCGCC
CCGCATCTCCGCATCGAACAGGATCTTCGAACCACACTCGCTATTGCGCA
CAGCAGTGACGCCTGGAGTTTGCATACTCCGACGGAGTATACAATTGATC
CTGTACGACGAATGCCCCAGAATACAATGTACACAGGAGGATGAAATCGT
GGAAATCGACTCGATCTTCTGCCTGCCCCCCCCGCCCCCCCCCTCCCCTT
CCCCCTGTCCACTGCCGCAGAGTTCGGGCGTACCTGAGATGTTACGACGG
CCATGACGGCGACGGCGATGGGGTTTCCACTGCTGACAAAGGCAGTGTCA
AGGACGGGGACGGCCTGTTTGTCAAGTGGCTGGCGGAACCGCTACGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9051:2678..4574+

>mRNA_S-dermatodea_contig9051.17133.1 ID=mRNA_S-dermatodea_contig9051.17133.1|Name=mRNA_S-dermatodea_contig9051.17133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig9051:2678..4574+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCTTGCCCCGTCTTCTGCTGGCCTCGGGGCTTTCCCGGAGCTGCGT
CAACGTGACTATTGCGAGGCTGGACATGCTGGGCCGAACCGCGGACAACA
CTGATGCTCTTGCCCCGTCTTCTGCTGGCCTCGGGGCTTTCCCGGAGCTG
CGTCAACGTGACTATTGCGAGGCTGGACATGCTGGGCCGAACCGCGGACA
ACACTGACGAGCTGTACCAGTACCTGATATCGCCGGATGCGCAGGGCACC
TGGGACATGGGCAGCAGTATGCAGTCTACCAAAAGCCTGAGGGACAAGCT
ATCGCGGAGACGAGCTGTACCAGTACCTGATATCGCCGGATGCGCAGGGC
ACCTGGGACATGGGCAGCAGTATGCAGTCTACCAAAAGCCTGAGGGACAA
GCTATCGCGGAGAGTTCGGGCGTACCTGAGATGTTACGACGGCCATGACG
GCGACGGCGATGGGGTTTCCACTGCTGACAAAGGCAGTGTCAAGGACGGG
GACGGCCTGTTTGTCAAGTGGCTGGCGGAACCGCTACGTAGTTCGGGCGT
ACCTGAGATGTTACGACGGCCATGACGGCGACGGCGATGGGGTTTCCACT
GCTGACAAAGGCAGTGTCAAGGACGGGGACGGCCTGTTTGTCAAGTGGCT
GGCGGAACCGCTACGT
back to top