mRNA_S-dermatodea_contig9051.17132.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9051.17132.1
Unique NamemRNA_S-dermatodea_contig9051.17132.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9051.17132.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.290e-52
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 3 
Query:    3 RKMVASNTLQRYPETFDLGASAVNGALRGATVEDIDLFAEGSVWPRQPRTRFPCLDASTGSVKTVLLPPLLIETAIALLSFHRADASLTPELQELQELMFP 305
            RKMVASNTLQRYPETFDL ASAVNGALRGATVE +DLFAEGSVWP +PRTRFPC++ASTG VKTVLLPPLL+ETAIALLSFHRADA+LTPEL+ELQELMFP
Sbjct: 1878 RKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAEGSVWPDKPRTRFPCVEASTGQVKTVLLPPLLLETAIALLSFHRADANLTPELRELQELMFP 1978
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BLAST of mRNA_S-dermatodea_contig9051.17132.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 3.910e-51
Identity = 89/101 (88.12%), Postives = 97/101 (96.04%), Query Frame = 3 
Query:    3 RKMVASNTLQRYPETFDLGASAVNGALRGATVEDIDLFAEGSVWPRQPRTRFPCLDASTGSVKTVLLPPLLIETAIALLSFHRADASLTPELQELQELMFP 305
            RKMVASNTLQRYPETFDL ASAVNGALRGATVE ++LFAEGSVWP +PRTRFPC++ASTG VKTVLLPPLL+ETAIALLSFHRADA+LTPEL+ELQELMFP
Sbjct:  531 RKMVASNTLQRYPETFDLAASAVNGALRGATVEGLNLFAEGSVWPDKPRTRFPCVEASTGEVKTVLLPPLLLETAIALLSFHRADANLTPELRELQELMFP 631
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9051.17132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4I3_9PHAE8.290e-5289.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ23_ECTSI3.910e-5188.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9051contigS-dermatodea_contig9051:500..1932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size307
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9051.17132.1prot_S-dermatodea_contig9051.17132.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9051 508..1932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.6915689-UTR-S-dermatodea_contig9051:499..5071622925382.6915689-UTR-S-dermatodea_contig9051:499..507Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9051 500..507 +
1694079896.0211217-UTR-S-dermatodea_contig9051:499..5071694079896.0211217-UTR-S-dermatodea_contig9051:499..507Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9051 500..507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925382.7051327-CDS-S-dermatodea_contig9051:507..6211622925382.7051327-CDS-S-dermatodea_contig9051:507..621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 508..621 +
1694079896.032026-CDS-S-dermatodea_contig9051:507..6211694079896.032026-CDS-S-dermatodea_contig9051:507..621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 508..621 +
1622925382.717082-CDS-S-dermatodea_contig9051:1240..13991622925382.717082-CDS-S-dermatodea_contig9051:1240..1399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 1241..1399 +
1694079896.0428996-CDS-S-dermatodea_contig9051:1240..13991694079896.0428996-CDS-S-dermatodea_contig9051:1240..1399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 1241..1399 +
1622925382.7274122-CDS-S-dermatodea_contig9051:1908..19321622925382.7274122-CDS-S-dermatodea_contig9051:1908..1932Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 1909..1932 +
1694079896.0539615-CDS-S-dermatodea_contig9051:1908..19321694079896.0539615-CDS-S-dermatodea_contig9051:1908..1932Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9051 1909..1932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9051.17132.1

>prot_S-dermatodea_contig9051.17132.1 ID=prot_S-dermatodea_contig9051.17132.1|Name=mRNA_S-dermatodea_contig9051.17132.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
MVASNTLQRYPETFDLGASAVNGALRGATVEDIDLFAEGSVWPRQPRTRF
PCLDASTGSVKTVLLPPLLIETAIALLSFHRADASLTPELQELQELMFP
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mRNA from alignment at S-dermatodea_contig9051:500..1932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9051.17132.1 ID=mRNA_S-dermatodea_contig9051.17132.1|Name=mRNA_S-dermatodea_contig9051.17132.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1433bp|location=Sequence derived from alignment at S-dermatodea_contig9051:500..1932+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAAAAATGGTTGCTTCTAACACCCTTCAGAGGTACCCGGAAACGTTC
GATCTCGGTGCCAGCGCCGTCAATGGGGCCCTGCGGGGTGCCACCGTCGA
AGACATCGACTTGTTCGCGGAGGCAAGTTTTCAGGAAGGGCAGGGTGGTG
GGGAGAGGTAGAGGCTGGTCCGATGAAAGTTGCCTCGTATGTCATCCAAA
CTGCGTAATGCTATTCGAGCCTCTTTGCTGCGCCGCCAAAATGGCAATAG
GAATCGCTCTACAGAGTTATGGTCCAAAAGAGTTGCTGTCTTCCTAGGCG
GTGACGCGTGTCAAGTTTTTTACCCAGAGTTTGGGTGACGGCTAGGTTTT
TCAAGTGTTGTGATCGAGCAGCTGGGCAAGACCGGGCCGAGTCCCTTCTG
CAGCTCTTCTCTTCGAGGTCTATGGCCGCTGTTCTGGTTAGAATGTTATC
TTTGGGTCATCTTCAAACGTGTTTGAAGCGTAGATCCGGACTATTTCGGC
CCAAACAGCAGGGCCGCAGGCGGCGGGCATCCTTTATTGTGGAAACATAG
CCTCTCTCGCTCTCTAAACCAGACTCCGCCTTCAAAACACATCTTGCAGG
GCCACACATACTGACTAAAGCCTGGCGATCGAGAAACACACACAACTTGA
ACACCTGGGAGCAACAACCGATCGTTCAAGAGACGCCAAGGTAACCTCCC
ACCTCTATCCCAACGGCGTTGGTTTTGTCCTTCCACCTCAGGGTAGCGTG
TGGCCCCGGCAACCGCGGACGCGCTTTCCCTGCCTGGACGCATCGACAGG
GAGCGTAAAGACGGTGCTCTTGCCGCCCCTGCTGATAGAGACGGCCATCG
CACTGCTGAGCTTTCACAGAGCCGACGCTAGCCTCACGCCGGAGTTGCAG
GTGCGCTTCGATTTTGTAGCTGTCTGTGGTGTAATATGCGGCTAGAGTTA
CCCCTCTCCCCGCATGATTGCGTGGCGACCCCTTGTTGCGAATAACCCGT
TCGTGCATTTCGCAGCGGGTCTCATTCCGTGTTTGCGGCGCCAGCTCGTA
CGCCTGACGCAAACAACACTGTAACGTGTAGGGATCTGTTGATTTGCCAC
TGTATGTGCTTGTAATTGCGTGTTTCAGCGCAAATCGTTTCGAGGTGTGT
GTGTGCGTGTGTGATACTACAAGGGTGCAGCCGATCCCTTTGTTTGCCTC
ATGTTCCGTGGAACGAACGGTAATTTTTTTCGCCTCCAAACACGCCAAAC
TTGGCCGCAAAGGCTCTGCAACAACACATCACCCCCCCCCCCACCCCCTG
CTCTCCTTTCACCACTAACCCCGGCGCCTAACCGAGCTGAATCCTACCAT
TCCCGGCCCGCCCCATTTATAACTCGCTGCACCCCGCACTAAACACGATA
CCCACCCAGGAACTCCAAGAGCTCATGTTTCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9051:500..1932+

>mRNA_S-dermatodea_contig9051.17132.1 ID=mRNA_S-dermatodea_contig9051.17132.1|Name=mRNA_S-dermatodea_contig9051.17132.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig9051:500..1932+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGCTTCTAACACCCTTCAGAGGTACCCGGAAACGTTCGATCTCGG
TGCCAGCGCCGTCAATGGGGCCCTGCGGGGTGCCACCGTCGAAGACATCG
ACTTGTTCGCGGAGATGGTTGCTTCTAACACCCTTCAGAGGTACCCGGAA
ACGTTCGATCTCGGTGCCAGCGCCGTCAATGGGGCCCTGCGGGGTGCCAC
CGTCGAAGACATCGACTTGTTCGCGGAGGGTAGCGTGTGGCCCCGGCAAC
CGCGGACGCGCTTTCCCTGCCTGGACGCATCGACAGGGAGCGTAAAGACG
GTGCTCTTGCCGCCCCTGCTGATAGAGACGGCCATCGCACTGCTGAGCTT
TCACAGAGCCGACGCTAGCCTCACGCCGGAGTTGCAGGGTAGCGTGTGGC
CCCGGCAACCGCGGACGCGCTTTCCCTGCCTGGACGCATCGACAGGGAGC
GTAAAGACGGTGCTCTTGCCGCCCCTGCTGATAGAGACGGCCATCGCACT
GCTGAGCTTTCACAGAGCCGACGCTAGCCTCACGCCGGAGTTGCAGGAAC
TCCAAGAGCTCATGTTTCCTGAACTCCAAGAGCTCATGTTTCCT
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